Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1921.1 Carica papaya HOM05D004424 ORTHO05D005476 4.0e-66 254.6 126 100.0
Manes.15G153800 Manihot esculenta HOM05D004424 ORTHO05D005476 2.0e-62 242.3 126 93.7
Ciclev10015567m.g Citrus clementina HOM05D004424 ORTHO05D005476 3.6e-59 231.5 126 88.9
Oeu054644.1 Olea europaea HOM05D004424 ORTHO05D005476 3.6e-59 231.5 126 88.1
Lj7A603T68 Lonicera japonica HOM05D004424 ORTHO05D005476 6.1e-59 230.7 126 88.9
Thecc.04G022600 Theobroma cacao HOM05D004424 ORTHO05D005476 1.0e-58 229.9 124 90.3
Cfa007312 Carpinus fangiana HOM05D004424 ORTHO05D005476 2.3e-58 228.8 124 89.5
Dinv33406 Davidia involucrata HOM05D004424 ORTHO05D005476 2.3e-58 228.8 124 87.9
Haze_14780 Corylus avellana HOM05D004424 ORTHO05D005476 4.0e-58 228.0 124 89.5
TAR629G0173 Trochodendron aralioides HOM05D004424 ORTHO05D005476 5.2e-58 227.6 126 87.3
PSO063G2103 Papaver somniferum HOM05D004424 ORTHO05D005476 8.9e-58 226.9 126 86.5
ATR0824G013 Amborella trichopoda HOM05D004424 ORTHO05D005476 1.2e-57 226.5 126 87.3
QL02p073533 Quercus lobata HOM05D004424 ORTHO05D005476 1.2e-57 226.5 124 87.9
CiPaw.03G047600 Carya illinoinensis HOM05D004424 ORTHO05D005476 1.5e-57 226.1 125 88.0
ClCG09G019460 Citrullus lanatus HOM05D004424 ORTHO05D005476 4.4e-57 224.6 123 87.8
COL.COLO4_29204 Corchorus olitorius HOM05D004424 ORTHO05D005476 7.5e-57 223.8 124 87.1
DCAR_011275 Daucus carota HOM05D004424 ORTHO05D005476 1.3e-56 223.0 126 86.5
Gohir.A09G031100 Gossypium hirsutum HOM05D004424 ORTHO05D005476 1.3e-56 223.0 124 87.9
Gohir.D09G031300 Gossypium hirsutum HOM05D004424 ORTHO05D005476 1.3e-56 223.0 124 87.9
Gorai.006G036200 Gossypium raimondii HOM05D004424 ORTHO05D005476 1.3e-56 223.0 124 87.9
Atru.chr6.2455 Acer truncatum HOM05D004424 ORTHO05D005476 1.7e-56 222.6 118 92.4
MELO3C021604.2 Cucumis melo HOM05D004424 ORTHO05D005476 1.7e-56 222.6 123 87.0
CsaV3_5G026900 Cucumis sativus L. HOM05D004424 ORTHO05D005476 1.7e-56 222.6 123 87.0
PSO067G0009 Papaver somniferum HOM05D004424 ORTHO05D005476 1.7e-56 222.6 126 86.5
Sed0023807 Sechium edule HOM05D004424 ORTHO05D005476 2.9e-56 221.9 123 86.2
GSVIVG01003989001 Vitis vinifera HOM05D004424 ORTHO05D005476 6.4e-56 220.7 124 85.5
CiPaw.04G031300 Carya illinoinensis HOM05D004424 ORTHO05D005476 8.3e-56 220.3 125 85.6
Potri.017G070900 Populus trichocarpa HOM05D004424 ORTHO05D005476 1.1e-55 219.9 118 92.4
SGA_v2.0_scaffold18G08249 Striga asiatica HOM05D004424 ORTHO05D005476 1.1e-55 219.9 126 84.1
MSTRG.24051 Avicennia marina HOM05D004424 ORTHO05D005476 2.4e-55 218.8 126 84.1
TWI36G0116 Tripterygium wilfordii HOM05D004424 ORTHO05D005476 4.6e-54 214.5 118 89.8
Duzib264G0829 Durio zibethinus HOM05D004424 ORTHO05D005476 7.8e-54 213.8 121 86.0
PGR083G2343 Punica granatum HOM05D004424 ORTHO05D005476 1.0e-53 213.4 116 89.7
Zm00001eb139850 Zea mays HOM05D004424 ORTHO05D005476 1.3e-53 213.0 126 80.2
CANSAT64G1206 Cannabis sativa HOM05D004424 ORTHO05D005476 2.9e-53 211.8 117 88.0
Lsat_1_v5_gn_4_184601 Lactuca sativa HOM05D004424 ORTHO05D005476 3.9e-53 211.5 121 83.5
Prupe.3G296200 Prunus persica HOM05D004424 ORTHO05D005476 3.9e-53 211.5 113 91.2
HPP92_021439 Vanilla planifolia HOM05D004424 ORTHO05D005476 5.0e-53 211.1 126 80.2
ECA232G4437 Erigeron canadensis HOM05D004424 ORTHO05D005476 8.6e-53 210.3 124 80.6
HanXRQChr09g0255531 Helianthus annuus HOM05D004424 ORTHO05D005476 8.6e-53 210.3 124 79.0
Lju41A44T88 Lonicera japonica HOM05D004424 ORTHO05D005476 1.1e-52 209.9 121 84.3
Aqoxy3G01375 Aquilegia oxysepala HOM05D004424 ORTHO05D005476 1.9e-52 209.1 122 85.2
HPP92_027100 Vanilla planifolia HOM05D004424 ORTHO05D005476 1.9e-52 209.1 126 79.4
Hma1.2p1_0818F.1_g223410 Hydrangea macrophylla HOM05D004424 ORTHO05D005476 3.3e-52 208.4 116 87.9
CSS0000987 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 5.6e-52 207.6 110 91.8
CSS0022745 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 5.6e-52 207.6 110 91.8
FvH4_6g52110 Fragaria vesca HOM05D004424 ORTHO05D005476 1.2e-51 206.5 113 88.5
FAN05G4460 Fragaria x ananassa HOM05D004424 ORTHO05D005476 1.2e-51 206.5 113 88.5
FAN14G4625 Fragaria x ananassa HOM05D004424 ORTHO05D005476 1.2e-51 206.5 113 88.5
MD17G1020700 Malus domestica HOM05D004424 ORTHO05D005476 1.2e-51 206.5 113 88.5
RcHm_v2.0_Chr2g0173621 Rosa chinensis HOM05D004424 ORTHO05D005476 1.6e-51 206.1 113 88.5
VMungo0464G1386 Vigna mungo HOM05D004424 ORTHO05D005476 1.6e-51 206.1 113 90.3
Phvul.004G059500 Phaseolus vulgaris HOM05D004424 ORTHO05D005476 2.8e-51 205.3 113 89.4
CAN.G1057.16 Capsicum annuum HOM05D004424 ORTHO05D005476 3.6e-51 204.9 119 83.2
Nitab4.5_0000040g0610 Nicotiana tabacum HOM05D004424 ORTHO05D005476 4.7e-51 204.5 122 82.0
Nitab4.5_0004496g0010 Nicotiana tabacum HOM05D004424 ORTHO05D005476 4.7e-51 204.5 122 82.0
PGSC0003DMG400006965 Solanum tuberosum HOM05D004424 ORTHO05D005476 4.7e-51 204.5 118 83.9
Solyc02g067930.3 Solanum lycopersicum HOM05D004424 ORTHO05D005476 6.2e-51 204.1 118 83.9
Peaxi162Scf00080g01518 Petunia axillaris HOM05D004424 ORTHO05D005476 8.0e-51 203.8 122 81.1
FAN02G2704 Fragaria x ananassa HOM05D004424 ORTHO05D005476 1.0e-50 203.4 113 87.6
FAN09G1365 Fragaria x ananassa HOM05D004424 ORTHO05D005476 1.0e-50 203.4 113 87.6
arahy.Tifrunner.gnm1.ann1.75451B Arachis hypogaea HOM05D004424 ORTHO05D005476 1.4e-50 203.0 117 86.3
MD17G1020500 Malus domestica HOM05D004424 ORTHO05D005476 1.4e-50 203.0 113 86.7
Sopen02g017050 Solanum pennellii HOM05D004424 ORTHO05D005476 1.4e-50 203.0 118 83.1
Ca_04390_v3 Cicer arietinum L. HOM05D004424 ORTHO05D005476 1.8e-50 202.6 113 88.5
Glyma.19G053500 Glycine max HOM05D004424 ORTHO05D005476 1.8e-50 202.6 113 89.4
MD09G1020100 Malus domestica HOM05D004424 ORTHO05D005476 2.3e-50 202.2 113 86.7
Glyma.05G114400 Glycine max HOM05D004424 ORTHO05D005476 4.0e-50 201.4 113 88.5
THA.LOC104805357 Tarenaya hassleriana HOM05D004424 ORTHO05D005476 6.8e-50 200.7 113 85.8
Lj2g0008128 Lotus japonicus HOM05D004424 ORTHO05D005476 1.5e-49 199.5 113 88.5
THA.LOC104825312 Tarenaya hassleriana HOM05D004424 ORTHO05D005476 2.0e-49 199.1 113 87.6
AL7G49190 Arabidopsis lyrata HOM05D004424 ORTHO05D005476 3.4e-49 198.4 112 84.8
Aa31LG9G1010 Aethionema arabicum HOM05D004424 ORTHO05D005476 4.4e-49 198.0 116 80.2
RhsimUnG0088000 Rhododendron simsii HOM05D004424 ORTHO05D005476 4.4e-49 198.0 109 87.2
BcaC08g44470 Brassica carinata HOM05D004424 ORTHO05D005476 9.8e-49 196.8 112 84.8
A07p20340 Brassica napus HOM05D004424 ORTHO05D005476 9.8e-49 196.8 112 84.8
BolC6t37118H Brassica oleracea HOM05D004424 ORTHO05D005476 9.8e-49 196.8 112 84.8
BraA07t29735Z Brassica rapa HOM05D004424 ORTHO05D005476 9.8e-49 196.8 112 84.8
CSS0006863 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 9.8e-49 196.8 109 89.0
CSS0021502 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 9.8e-49 196.8 109 89.0
TWI56G0533 Tripterygium wilfordii HOM05D004424 ORTHO05D005476 9.8e-49 196.8 118 80.5
BcaB02g07939 Brassica carinata HOM05D004424 ORTHO05D005476 1.7e-48 196.1 112 83.9
Eucgr.J02265 Eucalyptus grandis HOM05D004424 ORTHO05D005476 1.7e-48 196.1 109 89.0
Carub.0007s3488 Capsella rubella HOM05D004424 ORTHO05D005476 2.2e-48 195.7 112 83.0
CARHR261350 Cardamine hirsuta HOM05D004424 ORTHO05D005476 2.2e-48 195.7 111 84.7
BolC4t26343H Brassica oleracea HOM05D004424 ORTHO05D005476 2.9e-48 195.3 114 81.6
Migut.K01420 Erythranthe guttata HOM05D004424 ORTHO05D005476 4.9e-48 194.5 106 90.6
Sp7g01260 Schrenkiella parvula HOM05D004424 ORTHO05D005476 6.4e-48 194.1 112 83.9
Cc07_g00150 Coffea canephora HOM05D004424 ORTHO05D005476 8.3e-48 193.7 107 87.9
Gohir.D04G060000 Gossypium hirsutum HOM05D004424 ORTHO05D005476 1.1e-47 193.4 115 85.2
AT5G40610 Arabidopsis thaliana HOM05D004424 ORTHO05D005476 3.2e-47 191.8 112 83.0
Aqoxy3G01300 Aquilegia oxysepala HOM05D004424 ORTHO05D005476 1.6e-46 189.5 113 80.5
Os01g0971600 Oryza sativa ssp. japonica HOM05D004424 ORTHO05D005476 1.6e-46 189.5 111 82.0
Phvul.008G160800 Phaseolus vulgaris HOM05D004424 ORTHO05D005476 7.8e-46 187.2 113 80.5
Actinidia36142 Actinidia chinensis HOM05D004424 ORTHO05D005476 1.7e-45 186.0 98 91.8
Glyma.19G079400 Glycine max HOM05D004424 ORTHO05D005476 6.6e-45 184.1 113 78.8
C06p19220 Brassica napus HOM05D004424 ORTHO05D005476 2.5e-44 182.2 136 69.1
AagrBONN_evm.TU.Sc2ySwM_117.680 Anthoceros agrestis HOM05D004424 ORTHO05D005476 9.5e-44 180.3 113 77.0
RhsimUnG0005500 Rhododendron simsii HOM05D004424 ORTHO05D005476 1.2e-43 179.9 95 89.5
SMO244G0041 Selaginella moellendorffii HOM05D004424 ORTHO05D005476 1.2e-43 179.9 113 79.6
Gorai.012G066600 Gossypium raimondii HOM05D004424 ORTHO05D005476 2.1e-43 179.1 141 69.5
Sc16g0003770 Simmondsia chinensis HOM05D004424 ORTHO05D005476 2.1e-43 179.1 110 79.1
Ca_05240_v3 Cicer arietinum L. HOM05D004424 ORTHO05D005476 2.8e-43 178.7 114 76.3
PSO578G0012 Papaver somniferum HOM05D004424 ORTHO05D005476 4.7e-43 177.9 109 78.9
Lj1g0018666 Lotus japonicus HOM05D004424 ORTHO05D005476 6.2e-43 177.6 112 78.6
Lalb_Chr22g0360631 Lupinus albus HOM05D004424 ORTHO05D005476 1.8e-42 176.0 112 77.7
arahy.Tifrunner.gnm1.ann1.E7CAJ8 Arachis hypogaea HOM05D004424 ORTHO05D005476 2.3e-42 175.6 112 76.8
SEGI_10400 Sequoiadendron giganteum HOM05D004424 ORTHO05D005476 2.3e-42 175.6 121 72.7
DCAR_021744 Daucus carota HOM05D004424 ORTHO05D005476 3.1e-42 175.3 111 76.6
TPR.G1131 Trifolium pratense HOM05D004424 ORTHO05D005476 3.1e-42 175.3 114 75.4
Medtr7g032630 Medicago truncatula HOM05D004424 ORTHO05D005476 1.2e-41 173.3 109 78.9
Pp3c15_11110 Physcomitrium patens HOM05D004424 ORTHO05D005476 4.4e-41 171.4 108 77.8
Psat3g172960 Pisum sativum HOM05D004424 ORTHO05D005476 1.3e-40 169.9 114 72.8
BcaB06g27537 Brassica carinata HOM05D004424 ORTHO05D005476 2.2e-40 169.1 112 74.1
AUR62041297 Chenopodium quinoa HOM05D004424 ORTHO05D005476 2.2e-40 169.1 108 75.9
PSO478G3400 Papaver somniferum HOM05D004424 ORTHO05D005476 2.2e-40 169.1 109 76.1
Mapoly0218s0007 Marchantia polymorpha HOM05D004424 ORTHO05D005476 6.4e-40 167.5 113 71.7
EL10Ac4g08826 Beta vulgaris HOM05D004424 ORTHO05D005476 1.2e-38 163.3 110 70.0
Hund06842 Selenicereus undatus HOM05D004424 ORTHO05D005476 2.7e-38 162.2 110 73.6
PSO017G0380 Papaver somniferum HOM05D004424 ORTHO05D005476 4.6e-38 161.4 107 72.9
PSO017G1760 Papaver somniferum HOM05D004424 ORTHO05D005476 4.6e-38 161.4 107 72.9
vmacro05893 Vaccinium macrocarpon HOM05D004424 ORTHO05D005476 3.9e-37 158.3 110 73.6
arahy.Tifrunner.gnm1.ann1.SWZ6KM Arachis hypogaea HOM05D004424 ORTHO05D005476 4.0e-34 148.3 110 69.1
Gohir.A05G353300 Gossypium hirsutum HOM05D004424 ORTHO05D005476 2.0e-33 146.0 83 88.0
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 1.7e-32 142.9 79 88.6
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 6.4e-32 141.0 79 87.3
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 8.4e-32 140.6 79 86.1
PSO017G0629 Papaver somniferum HOM05D004424 ORTHO05D005476 7.1e-31 137.5 107 64.5
Oeu050453.1 Olea europaea HOM05D004424 ORTHO05D005476 9.2e-31 137.1 85 82.4
Actinidia05960 Actinidia chinensis HOM05D004424 ORTHO05D005476 3.3e-28 128.6 71 90.1
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 5.6e-28 127.9 121 52.1
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.1e-27 125.9 121 51.2
AUR62035520 Chenopodium quinoa HOM05D004424 ORTHO05D005476 6.2e-27 124.4 78 76.9
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.4e-26 123.2 111 54.1
PRCOL_00004238 Prasinoderma coloniale HOM05D004424 ORTHO05D005476 1.8e-26 122.9 94 67.0
Medtr6g021915 Medicago truncatula HOM05D004424 ORTHO05D005476 4.0e-26 121.7 65 92.3
TPR.G21634 Trifolium pratense HOM05D004424 ORTHO05D005476 4.0e-26 121.7 65 92.3
Atru.chr2.1101 Acer truncatum HOM05D004424 ORTHO05D005476 1.5e-25 119.8 65 89.2
Haze_27221 Corylus avellana HOM05D004424 ORTHO05D005476 2.0e-25 119.4 100 58.0
Lalb_Chr24g0403451 Lupinus albus HOM05D004424 ORTHO05D005476 4.9e-24 114.8 65 86.2
Duzib264G0567 Durio zibethinus HOM05D004424 ORTHO05D005476 2.3e-21 105.9 61 80.3
Ah.04g162770 Amaranthus hybridus HOM05D004424 ORTHO05D005476 6.6e-21 104.4 65 78.5
Hma1.2p1_0279F.1_g111990 Hydrangea macrophylla HOM05D004424 ORTHO05D005476 2.8e-19 99.0 62 67.7
CSS0033068 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 4.4e-17 91.7 49 89.8
CSS0005299 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 8.4e-16 87.4 49 85.7
Thhalv10027824m.g Eutrema salsugineum HOM05D004424 ORTHO05D005476 1.1e-15 87.0 49 83.7
Medtr6g021910 Medicago truncatula HOM05D004067 ORTHO05D004827 1.1e-15 87.0 49 83.7
TPR.G21639 Trifolium pratense HOM05D004067 ORTHO05D004827 1.9e-15 86.3 48 85.4
CSS0015599 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 1.2e-14 83.6 49 87.8
Cfa026705 Carpinus fangiana HOM05D004424 ORTHO05D005476 1.5e-12 76.6 87 48.3
FAN09G1353 Fragaria x ananassa HOM05D004424 ORTHO05D005476 3.2e-07 58.9 30 90.0
Psat1g081600 Pisum sativum HOM05D004424 ORTHO05D005476 4.6e-06 55.1 30 86.7


User provided reference genes

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