Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc190.24 Carica papaya HOM05D001197 ORTHO05D000124 1.1e-74 283.1 139 100.0
CANSAT01G1479 Cannabis sativa HOM05D001197 ORTHO05D000124 7.3e-13 77.8 60 65.0
HanXRQChr05g0134271 Helianthus annuus HOM05D001197 ORTHO05D000124 9.6e-13 77.4 61 60.7
Lsat_1_v5_gn_8_77780 Lactuca sativa HOM05D001197 ORTHO05D000124 9.6e-13 77.4 97 43.3
Sabra16G0142200 Salix brachista HOM05D000142 ORTHO05D000124 2.1e-12 76.3 60 65.0
Actinidia03783 Actinidia chinensis HOM05D001197 ORTHO05D000124 4.8e-12 75.1 61 62.3
Potri.001G236200 Populus trichocarpa HOM05D001197 ORTHO05D000124 4.8e-12 75.1 87 50.6
Prupe.6G082600 Prunus persica HOM05D000142 ORTHO05D000124 4.8e-12 75.1 61 60.7
QL01p033075 Quercus lobata HOM05D001197 ORTHO05D000124 6.2e-12 74.7 61 63.9
Carub.0008s2060 Capsella rubella HOM05D001197 ORTHO05D000124 8.1e-12 74.3 67 56.7
Lalb_Chr14g0375031 Lupinus albus HOM05D001197 ORTHO05D000124 8.1e-12 74.3 70 55.7
Manes.11G133601 Manihot esculenta HOM05D000142 ORTHO05D000124 8.1e-12 74.3 70 57.1
Solyc11g073238.1 Solanum lycopersicum HOM05D001197 ORTHO05D000124 8.1e-12 74.3 70 58.6
RcHm_v2.0_Chr5g0063171 Rosa chinensis HOM05D000142 ORTHO05D000124 1.1e-11 73.9 61 60.7
CiPaw.13G098300 Carya illinoinensis HOM05D001197 ORTHO05D000124 1.8e-11 73.2 77 51.9
Dinv32842 Davidia involucrata HOM05D001197 ORTHO05D000124 1.8e-11 73.2 70 55.7
Gorai.009G091800 Gossypium raimondii HOM05D000142 ORTHO05D000124 2.4e-11 72.8 61 62.3
Nitab4.5_0003782g0140 Nicotiana tabacum HOM05D001197 ORTHO05D000124 2.4e-11 72.8 70 57.1
GSVIVG01025020001 Vitis vinifera HOM05D001197 ORTHO05D000124 2.4e-11 72.8 61 59.0
Gohir.A05G088400 Gossypium hirsutum HOM05D000142 ORTHO05D000124 3.1e-11 72.4 61 60.7
Gohir.D05G089400 Gossypium hirsutum HOM05D000142 ORTHO05D000124 3.1e-11 72.4 61 60.7
Lj3g0009978 Lotus japonicus HOM05D001197 ORTHO05D000124 3.1e-11 72.4 70 54.3
Rhsim01G0225000 Rhododendron simsii HOM05D001197 ORTHO05D000124 3.1e-11 72.4 80 50.0
RcHm_v2.0_Chr5g0063221 Rosa chinensis HOM05D000142 ORTHO05D000124 3.1e-11 72.4 70 55.7
Actinidia23957 Actinidia chinensis HOM05D000437 ORTHO05D000124 4.0e-11 72.0 60 63.3
FAN21G0095 Fragaria x ananassa HOM05D000142 ORTHO05D000124 4.0e-11 72.0 61 57.4
MD03G1098400 Malus domestica HOM05D000142 ORTHO05D000124 4.0e-11 72.0 70 54.3
vmacro14509 Vaccinium macrocarpon HOM05D001197 ORTHO05D000124 4.0e-11 72.0 61 59.0
MBI05_g28549_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D000124 5.3e-11 71.6 62 59.7
MBI05_g38962_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D000124 5.3e-11 71.6 62 59.7
Duzib168G2036 Durio zibethinus HOM05D001197 ORTHO05D000124 6.9e-11 71.2 61 59.0
FvH4_3g35150 Fragaria vesca HOM05D001197 ORTHO05D000124 6.9e-11 71.2 70 54.3
FAN11G1225 Fragaria x ananassa HOM05D001197 ORTHO05D000124 6.9e-11 71.2 70 54.3
FAN25G1495 Fragaria x ananassa HOM05D001197 ORTHO05D000124 6.9e-11 71.2 70 54.3
Cc01_g12400 Coffea canephora HOM05D001197 ORTHO05D000124 9.0e-11 70.9 70 57.1
FAN16G0665 Fragaria x ananassa HOM05D001197 ORTHO05D000124 1.2e-10 70.5 79 50.6
Thecc.09G326700 Theobroma cacao HOM05D000142 ORTHO05D000124 1.2e-10 70.5 60 61.7
ClCG03G001920 Citrullus lanatus HOM05D001197 ORTHO05D000124 1.5e-10 70.1 81 46.9
ECA236G1727 Erigeron canadensis HOM05D001197 ORTHO05D000124 1.5e-10 70.1 61 57.4
AL8G36420 Arabidopsis lyrata HOM05D000142 ORTHO05D000124 2.0e-10 69.7 61 54.1
BcaB05g22594 Brassica carinata HOM05D000142 ORTHO05D000124 2.0e-10 69.7 61 55.7
A02p06770 Brassica napus HOM05D000142 ORTHO05D000124 2.0e-10 69.7 61 55.7
C02p12060 Brassica napus HOM05D000142 ORTHO05D000124 2.0e-10 69.7 61 55.7
BraA02t05756Z Brassica rapa HOM05D000142 ORTHO05D000124 2.0e-10 69.7 61 55.7
Glyma.15G040500 Glycine max HOM05D001197 ORTHO05D000124 2.0e-10 69.7 61 57.4
DCAR_006001 Daucus carota HOM05D000437 ORTHO05D000324 2.6e-10 69.3 61 60.7
TWI79G1193 Tripterygium wilfordii HOM05D001197 ORTHO05D000124 2.6e-10 69.3 61 60.7
MELO3C020705.2 Cucumis melo HOM05D000142 ORTHO05D000124 3.4e-10 68.9 70 50.0
Thhalv10002983m.g Eutrema salsugineum HOM05D000142 ORTHO05D000124 3.4e-10 68.9 60 58.3
AL5G24740 Arabidopsis lyrata HOM05D000142 ORTHO05D000124 4.4e-10 68.6 61 54.1
Sp6g21550 Schrenkiella parvula HOM05D000142 ORTHO05D000124 5.8e-10 68.2 61 54.1
Aqoxy2G02026 Aquilegia oxysepala HOM05D001197 ORTHO05D000124 7.6e-10 67.8 83 45.8
Glyma.13G333700 Glycine max HOM05D001197 ORTHO05D000124 7.6e-10 67.8 70 51.4
Phvul.L003243 Phaseolus vulgaris HOM05D001197 ORTHO05D000124 7.6e-10 67.8 76 44.7
AT3G46020 Arabidopsis thaliana HOM05D000142 ORTHO05D000124 9.9e-10 67.4 61 52.5
CARHR154380 Cardamine hirsuta HOM05D000142 ORTHO05D000124 9.9e-10 67.4 61 52.5
CsaV3_5G030700 Cucumis sativus L. HOM05D001197 ORTHO05D000124 9.9e-10 67.4 81 45.7
Aa31LG4G15140 Aethionema arabicum HOM05D001197 ORTHO05D000124 1.3e-09 67.0 67 52.2
TAR164G0001 Trochodendron aralioides HOM05D001197 ORTHO05D000124 1.3e-09 67.0 61 52.5
CSS0002532 Camellia sinensis var. sinensis HOM05D001197 ORTHO05D000124 1.7e-09 66.6 61 57.4
Medtr2g096560 Medicago truncatula HOM05D001197 ORTHO05D000124 1.7e-09 66.6 70 48.6
Prupe.2G070500 Prunus persica HOM05D001197 ORTHO05D000124 1.7e-09 66.6 65 49.2
Ciclev10029673m.g Citrus clementina HOM05D001197 ORTHO05D000124 2.2e-09 66.2 70 50.0
Hma1.2p1_0624F.1_g191310 Hydrangea macrophylla HOM05D001197 ORTHO05D000124 2.2e-09 66.2 75 50.7
SalBow7G0273 Salvia bowleyana HOM05D001197 ORTHO05D000124 2.9e-09 65.9 79 44.3
THA.LOC104810813 Tarenaya hassleriana HOM05D000142 ORTHO05D000124 2.9e-09 65.9 84 50.0
ATR0222G027 Amborella trichopoda HOM05D001197 ORTHO05D000124 3.8e-09 65.5 60 55.0
TPR.G34295 Trifolium pratense HOM05D001197 ORTHO05D000124 3.8e-09 65.5 70 47.1
AT5G59860 Arabidopsis thaliana HOM05D001197 ORTHO05D000124 4.9e-09 65.1 61 52.5
Oeu020535.2 Olea europaea HOM05D001197 ORTHO05D000124 6.4e-09 64.7 70 50.0
Sp5g15580 Schrenkiella parvula HOM05D001197 ORTHO05D000124 6.4e-09 64.7 61 50.8
arahy.Tifrunner.gnm1.ann1.PV01EY Arachis hypogaea HOM05D001197 ORTHO05D000124 8.4e-09 64.3 83 45.8
Eucgr.J02066 Eucalyptus grandis HOM05D001197 ORTHO05D000124 8.4e-09 64.3 61 50.8
Sc12g0001650 Simmondsia chinensis HOM05D001197 ORTHO05D000124 1.1e-08 63.9 61 47.5
Psat5g283320 Pisum sativum HOM05D005106 ORTHO05D000124 1.4e-08 63.5 58 53.4
Ah.11g043890 Amaranthus hybridus HOM05D000142 ORTHO05D000124 1.9e-08 63.2 60 48.3
arahy.Tifrunner.gnm1.ann1.0XQ1R2 Arachis hypogaea HOM05D001197 ORTHO05D000124 1.9e-08 63.2 77 48.1
BolC2t07304H Brassica oleracea HOM05D001197 ORTHO05D000124 1.9e-08 63.2 61 52.5
AUR62038759 Chenopodium quinoa HOM05D000142 ORTHO05D000124 1.9e-08 63.2 60 51.7
Prupe.1G207800 Prunus persica HOM05D001197 ORTHO05D006337 1.9e-08 63.2 61 50.8
Carub.0005s1188 Capsella rubella HOM05D001197 ORTHO05D000124 4.2e-08 62.0 61 47.5
COL.COLO4_18460 Corchorus olitorius HOM05D001197 ORTHO05D000124 5.4e-08 61.6 45 66.7
Duzib170G0169 Durio zibethinus HOM05D000142 ORTHO05D000124 1.2e-07 60.5 60 53.3
Duzib170G1109 Durio zibethinus HOM05D000142 ORTHO05D000124 1.2e-07 60.5 60 53.3
Cfa011456 Carpinus fangiana HOM05D001197 ORTHO05D000124 1.6e-07 60.1 42 66.7
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 2.1e-07 59.7 84 36.9
Gohir.D08G019700 Gossypium hirsutum HOM05D000142 ORTHO05D000124 2.7e-07 59.3 90 38.9
unitig_578.g15822 Utricularia gibba HOM05D000142 ORTHO05D000124 2.7e-07 59.3 105 38.1
Gohir.A03G070100 Gossypium hirsutum HOM05D000142 ORTHO05D000124 1.3e-06 57.0 110 37.3
PGR119G0586 Punica granatum HOM05D000142 ORTHO05D000124 1.3e-06 57.0 61 47.5
Sc07g0005660 Simmondsia chinensis HOM05D000142 ORTHO05D000124 1.3e-06 57.0 91 40.7
HPP92_023018 Vanilla planifolia HOM05D000142 ORTHO05D000124 1.3e-06 57.0 77 45.5
HPP92_023058 Vanilla planifolia HOM05D000142 ORTHO05D000124 1.3e-06 57.0 69 49.3
Thhalv10015391m.g Eutrema salsugineum HOM05D001197 ORTHO05D000124 1.7e-06 56.6 61 45.9
Gohir.A08G009600 Gossypium hirsutum HOM05D000142 ORTHO05D000124 1.7e-06 56.6 90 37.8
Gohir.D03G096650 Gossypium hirsutum HOM05D000142 ORTHO05D000124 2.3e-06 56.2 108 33.3
Gorai.003G101300 Gossypium raimondii HOM05D000142 ORTHO05D000124 2.3e-06 56.2 108 33.3
Gorai.004G014200 Gossypium raimondii HOM05D000142 ORTHO05D000124 2.3e-06 56.2 89 37.1
MD14G1031800 Malus domestica HOM05D000142 ORTHO05D000124 2.3e-06 56.2 76 43.4
QL07p038106 Quercus lobata HOM05D000142 ORTHO05D000124 3.0e-06 55.8 74 44.6
SMO356G0437 Selaginella moellendorffii HOM05D000142 ORTHO05D000124 3.0e-06 55.8 61 45.9
TAR623G0690 Trochodendron aralioides HOM05D000142 ORTHO05D000124 3.0e-06 55.8 78 43.6
SMO361G0046 Selaginella moellendorffii HOM05D000142 ORTHO05D000124 3.9e-06 55.5 69 43.5
Nn2g14228 Nelumbo nucifera HOM05D000142 ORTHO05D000124 5.1e-06 55.1 70 45.7
Psat3g027040 Pisum sativum HOM05D000142 ORTHO05D000124 5.1e-06 55.1 95 35.8
CSS0026082 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D000124 6.6e-06 54.7 85 41.2
Eucgr.K02572 Eucalyptus grandis HOM05D000142 ORTHO05D000124 6.6e-06 54.7 83 42.2
Manes.09G086900 Manihot esculenta HOM05D001197 ORTHO05D000124 6.6e-06 54.7 89 34.8
Prupe.7G101000 Prunus persica HOM05D000142 ORTHO05D000124 6.6e-06 54.7 74 43.2
SEGI_41610 Sequoiadendron giganteum HOM05D000142 ORTHO05D000124 6.6e-06 54.7 69 43.5
Atru.chr6.3242 Acer truncatum HOM05D000142 ORTHO05D000124 8.7e-06 54.3 81 38.3
MSTRG.3004 Avicennia marina HOM05D000142 ORTHO05D000124 8.7e-06 54.3 99 32.3
BcaB02g09280 Brassica carinata HOM05D000142 ORTHO05D000124 8.7e-06 54.3 78 39.7
BcaC02g11858 Brassica carinata HOM05D000142 ORTHO05D000124 8.7e-06 54.3 78 39.7
C04p10540 Brassica napus HOM05D000142 ORTHO05D000124 8.7e-06 54.3 78 39.7
BolC4t22645H Brassica oleracea HOM05D000142 ORTHO05D000124 8.7e-06 54.3 78 39.7
AUR62020623 Chenopodium quinoa HOM05D000142 ORTHO05D000124 8.7e-06 54.3 80 40.0
ClCG02G010060 Citrullus lanatus HOM05D000142 ORTHO05D000124 8.7e-06 54.3 80 43.8
Hma1.2p1_0820F.1_g224080 Hydrangea macrophylla HOM05D000142 ORTHO05D000124 8.7e-06 54.3 76 43.4
Nitab4.5_0003808g0070 Nicotiana tabacum HOM05D000142 ORTHO05D000124 8.7e-06 54.3 87 36.8
Os01g0502800 Oryza sativa ssp. japonica HOM05D000142 ORTHO05D000124 8.7e-06 54.3 37 62.2
Pp3c1_6280 Physcomitrium patens HOM05D000142 ORTHO05D000124 8.7e-06 54.3 63 42.9
Potri.006G208500 Populus trichocarpa HOM05D000142 ORTHO05D000124 8.7e-06 54.3 82 37.8


User provided reference genes

Program Settings