Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 8.9e-204 713.4 359 100.0
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 2.0e-171 605.9 357 84.6
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 7.6e-171 604.0 357 84.3
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 2.3e-167 592.4 356 81.5
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 1.9e-166 589.3 368 80.7
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 7.4e-166 587.4 352 81.8
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 9.6e-166 587.0 352 81.8
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 9.6e-166 587.0 356 82.3
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 2.1e-165 585.9 347 83.6
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 2.8e-165 585.5 356 80.3
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 3.7e-165 585.1 356 79.5
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 6.2e-165 584.3 351 83.2
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 1.1e-164 583.6 357 79.3
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 3.1e-164 582.0 352 81.2
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 4.0e-164 581.6 356 79.5
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 6.9e-164 580.9 352 81.2
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 1.2e-163 580.1 356 78.7
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 3.4e-163 578.6 356 81.5
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 3.4e-163 578.6 356 81.2
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 4.5e-163 578.2 353 81.9
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 5.8e-163 577.8 352 81.5
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 5.8e-163 577.8 351 81.5
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 7.6e-163 577.4 356 81.5
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 9.9e-163 577.0 356 79.8
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 1.3e-162 576.6 347 83.9
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 1.3e-162 576.6 356 81.2
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 1.3e-162 576.6 352 81.2
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 6.4e-162 574.3 348 83.3
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 8.4e-162 573.9 352 80.7
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 1.1e-161 573.5 348 82.5
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 1.1e-161 573.5 354 80.2
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 1.9e-161 572.8 356 81.2
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 2.4e-161 572.4 348 82.5
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 2.4e-161 572.4 348 82.5
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 2.4e-161 572.4 348 82.5
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 3.2e-161 572.0 349 82.2
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 3.2e-161 572.0 348 82.5
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 5.5e-161 571.2 348 82.8
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 1.2e-160 570.1 348 82.2
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 2.7e-160 568.9 352 79.0
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 6.0e-160 567.8 356 78.7
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 7.9e-160 567.4 352 78.7
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.3e-159 566.6 349 81.9
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 2.3e-159 565.8 358 78.8
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 3.0e-159 565.5 350 80.9
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.0e-159 565.5 349 81.7
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 3.9e-159 565.1 356 79.2
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 5.1e-159 564.7 349 81.7
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.5e-158 563.1 374 77.0
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 3.3e-158 562.0 356 78.7
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 7.4e-158 560.8 351 80.3
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 1.3e-157 560.1 358 78.8
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 6.2e-157 557.8 354 76.6
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.1e-156 557.0 339 81.4
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 1.4e-156 556.6 352 79.8
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 1.4e-156 556.6 352 79.5
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 4.0e-156 555.1 348 80.5
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 5.3e-156 554.7 348 80.2
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 1.3e-154 550.1 353 79.0
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 2.9e-154 548.9 348 79.6
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 1.1e-153 547.0 357 76.5
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 1.9e-153 546.2 357 75.6
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 1.9e-153 546.2 353 77.6
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 7.1e-153 544.3 353 75.1
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 9.3e-153 543.9 349 77.4
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.2e-152 543.5 349 77.4
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.1e-152 542.7 349 77.4
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 6.0e-152 541.2 353 74.8
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 1.0e-151 540.4 348 77.3
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 3.9e-151 538.5 371 72.5
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 4.3e-150 535.0 352 74.1
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 3.7e-149 531.9 352 75.6
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 1.1e-148 530.4 352 73.0
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 6.9e-148 527.7 350 74.6
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 1.2e-147 526.9 353 74.2
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 2.6e-147 525.8 351 72.6
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 1.0e-146 523.9 370 70.8
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 5.0e-146 521.5 300 82.7
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 3.6e-144 515.4 338 75.1
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 2.0e-142 509.6 350 71.4
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 2.0e-142 509.6 356 71.3
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 3.3e-142 508.8 351 74.6
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 9.7e-142 507.3 376 69.7
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 2.8e-141 505.8 344 70.1
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 2.8e-141 505.8 351 72.9
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 8.2e-141 504.2 341 73.3
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 2.4e-140 502.7 338 73.7
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 1.5e-139 500.0 302 82.8
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 3.4e-139 498.8 383 67.9
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 6.1e-136 488.0 305 76.4
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.4e-135 486.9 349 74.8
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 3.9e-135 485.3 329 76.3
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 8.8e-135 484.2 349 73.9
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 3.3e-134 482.3 302 81.8
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 4.8e-133 478.4 298 81.5
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 6.3e-133 478.0 301 75.1
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 6.3e-133 478.0 347 72.6
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 5.9e-131 471.5 358 68.7
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 1.3e-130 470.3 313 75.4
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.3e-130 470.3 302 78.8
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 2.9e-130 469.2 389 63.5
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 3.8e-130 468.8 314 74.2
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 5.0e-130 468.4 346 65.9
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 8.8e-127 457.6 285 76.5
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.1e-126 457.2 354 68.1
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 2.0e-126 456.4 327 73.4
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 1.4e-124 450.3 251 86.5
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 1.3e-122 443.7 251 84.9
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 1.3e-122 443.7 315 71.1
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 4.2e-121 438.7 297 73.1
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 5.5e-121 438.3 301 74.1
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.2e-118 430.6 356 64.3
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 1.3e-114 417.2 296 70.6
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 2.5e-113 412.9 305 68.5
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.6e-112 410.2 265 80.0
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 2.1e-112 409.8 249 83.9
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 2.3e-111 406.4 387 59.9
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 4.1e-108 395.6 231 81.4
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 5.9e-107 391.7 342 56.1
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 3.8e-106 389.0 340 56.2
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 1.1e-105 387.5 266 75.6
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 9.5e-105 384.4 257 76.3
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 7.5e-102 374.8 257 77.0
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 1.5e-97 360.5 309 63.1
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 2.8e-96 356.3 345 52.2
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 4.0e-95 352.4 232 78.0
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 2.0e-94 350.1 332 54.8
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 6.6e-90 335.1 187 85.6
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.5e-89 333.2 222 75.2
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 3.6e-88 329.3 284 54.9
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.7e-85 320.5 254 66.9
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.3e-82 310.8 227 70.9
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 4.0e-79 299.3 195 74.9
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 7.5e-78 295.0 323 46.1
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.1e-63 248.1 361 44.6
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.5e-62 244.2 161 78.9
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 8.4e-61 238.4 191 65.4
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 3.1e-47 193.4 172 62.2
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 3.5e-35 153.3 95 76.8
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 2.6e-30 137.1 70 85.7
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 4.5e-30 136.3 71 87.3
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 5.9e-30 136.0 70 85.7
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 5.9e-30 136.0 70 85.7
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 1.3e-29 134.8 70 87.1
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 2.7e-27 127.1 62 90.3
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 2.3e-26 124.0 136 52.9
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 9.4e-20 102.1 95 57.9
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 8.2e-08 62.4 55 58.2
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 8.2e-08 62.4 40 75.0


User provided reference genes

Program Settings