Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 4.3e-144 514.6 255 100.0
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 4.3e-43 179.1 243 44.4
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 2.8e-42 176.4 256 40.6
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 3.4e-40 169.5 258 40.3
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 6.4e-39 165.2 184 52.2
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 7.8e-37 158.3 180 48.3
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 8.7e-36 154.8 258 38.0
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 4.3e-35 152.5 252 38.9
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 7.3e-35 151.8 166 46.4
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 2.8e-34 149.8 252 37.3
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 6.2e-34 148.7 194 42.3
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.8e-33 147.1 261 38.3
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 2.4e-33 146.7 182 42.9
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 4.0e-33 146.0 277 36.5
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 2.0e-32 143.7 247 36.8
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 4.4e-32 142.5 197 44.2
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.2e-31 140.2 249 37.8
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 2.9e-31 139.8 238 37.4
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 8.4e-31 138.3 196 39.8
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 2.4e-30 136.7 165 44.2
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 5.4e-30 135.6 200 39.5
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.7e-29 133.3 204 41.2
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 7.9e-29 131.7 215 39.1
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 7.9e-29 131.7 173 39.3
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 1.0e-28 131.3 201 40.3
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 5.1e-28 129.0 160 41.9
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 6.6e-28 128.6 218 38.1
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 6.6e-28 128.6 178 38.8
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 6.6e-28 128.6 159 43.4
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 6.6e-28 128.6 263 34.2
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 8.7e-28 128.3 220 35.5
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.1e-27 127.9 173 40.5
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.1e-27 127.9 173 40.5
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.9e-27 127.1 256 34.4
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.9e-27 127.1 174 42.0
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 5.6e-27 125.6 208 38.9
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 5.6e-27 125.6 183 40.4
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 7.3e-27 125.2 160 40.6
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 9.6e-27 124.8 170 41.2
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 1.3e-26 124.4 150 46.7
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.6e-26 124.0 180 39.4
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.1e-26 123.6 165 40.6
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 2.8e-26 123.2 160 41.2
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 3.6e-26 122.9 151 43.7
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 4.8e-26 122.5 176 39.2
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 4.8e-26 122.5 187 36.4
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.8e-25 120.6 143 44.8
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 1.8e-25 120.6 254 32.3
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 2.4e-25 120.2 307 31.3
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.4e-25 120.2 149 43.6
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 3.1e-25 119.8 145 44.1
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 4.0e-25 119.4 223 31.4
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 4.0e-25 119.4 204 37.3
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 6.9e-25 118.6 191 39.8
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 6.9e-25 118.6 166 41.6
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 9.0e-25 118.2 168 37.5
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 9.0e-25 118.2 171 38.6
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 9.0e-25 118.2 173 37.6
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 1.5e-24 117.5 201 36.3
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 2.0e-24 117.1 168 40.5
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.0e-24 117.1 173 38.2
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.3e-23 114.4 218 30.7
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.7e-23 114.0 226 34.1
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.2e-23 113.6 191 37.2
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 2.2e-23 113.6 187 40.1
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 2.9e-23 113.2 177 33.3
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 3.8e-23 112.8 285 31.2
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 4.9e-23 112.5 165 38.2
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 4.9e-23 112.5 218 33.9
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 6.4e-23 112.1 164 37.8
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 8.4e-23 111.7 190 35.8
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.9e-22 110.5 186 37.1
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 2.4e-22 110.2 291 32.3
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 3.2e-22 109.8 262 33.2
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 3.2e-22 109.8 176 37.5
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 4.2e-22 109.4 218 35.8
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 5.4e-22 109.0 322 31.1
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 7.1e-22 108.6 201 34.8
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 7.1e-22 108.6 141 39.0
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 7.1e-22 108.6 208 35.1
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 1.2e-21 107.8 188 39.4
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.2e-21 107.8 211 34.6
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.2e-21 107.8 202 31.7
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.1e-21 107.1 220 32.3
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 3.5e-21 106.3 274 31.8
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 4.6e-21 105.9 223 33.2
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 4.6e-21 105.9 217 32.7
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 6.0e-21 105.5 147 40.1
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 6.0e-21 105.5 165 35.2
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 6.0e-21 105.5 165 35.2
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 6.0e-21 105.5 166 35.5
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 7.9e-21 105.1 185 32.4
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 7.9e-21 105.1 200 32.5
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.3e-20 104.4 220 34.1
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.3e-20 104.4 256 33.2
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.3e-20 104.4 199 34.7
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.0e-20 103.2 200 35.5
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 3.0e-20 103.2 247 31.2
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.9e-20 102.8 212 31.6
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 3.9e-20 102.8 169 36.1
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 6.7e-20 102.1 165 37.0
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.7e-20 101.7 149 40.3
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 1.1e-19 101.3 161 40.4
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.5e-19 100.9 200 35.5
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 1.9e-19 100.5 117 44.4
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 1.9e-19 100.5 143 37.8
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 2.5e-19 100.1 184 32.1
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.3e-19 99.8 200 35.0
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.3e-19 99.8 200 35.0
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.3e-19 99.8 200 35.0
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 4.3e-19 99.4 241 32.8
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 7.4e-19 98.6 199 36.2
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 7.4e-19 98.6 95 51.6
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 1.6e-18 97.4 140 37.1
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 2.1e-18 97.1 165 37.6
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 4.8e-18 95.9 149 40.3
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 2.4e-17 93.6 112 42.9
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 3.1e-17 93.2 193 36.8
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 6.9e-17 92.0 165 37.0
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 6.9e-17 92.0 191 29.8
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 9.0e-17 91.7 204 29.9
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 5.8e-16 89.0 93 46.2
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 5.8e-16 89.0 236 32.2
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 1.0e-15 88.2 205 31.7
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 1.7e-15 87.4 204 31.4
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 2.2e-15 87.0 106 41.5
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 2.9e-15 86.7 174 32.8
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 6.5e-15 85.5 183 33.9
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 1.9e-14 84.0 175 32.6
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 4.2e-14 82.8 210 29.0
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 4.2e-14 82.8 149 35.6
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 7.1e-14 82.0 110 41.8
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 9.3e-14 81.6 108 43.5
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 2.7e-13 80.1 174 29.9
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 3.5e-13 79.7 171 31.6
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 4.6e-13 79.3 161 32.9
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 3.0e-12 76.6 154 33.1
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 3.9e-12 76.3 86 47.7
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 8.7e-12 75.1 317 24.0
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 4.3e-11 72.8 66 48.5
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 9.6e-11 71.6 88 39.8
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 1.1e-09 68.2 237 27.8
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 5.8e-08 62.4 256 24.6
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 1.0e-07 61.6 163 29.4
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 1.7e-07 60.8 190 29.5
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 2.9e-07 60.1 211 26.5
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 3.8e-07 59.7 161 27.3


User provided reference genes

Program Settings