Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 5.2e-276 953.7 481 100.0
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 4.4e-198 694.9 471 73.2
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 2.0e-195 686.0 471 72.8
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 7.7e-195 684.1 480 71.0
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 5.0e-194 681.4 480 71.0
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 6.6e-194 681.0 471 72.2
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.2e-193 677.6 472 72.2
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 7.2e-193 677.6 469 71.9
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 9.5e-193 677.2 472 72.5
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.6e-192 676.4 469 71.9
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.7e-192 674.9 472 72.0
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.8e-191 672.9 469 71.2
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 2.3e-191 672.5 468 71.2
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 4.0e-191 671.8 481 70.5
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 4.0e-191 671.8 478 70.3
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 5.7e-190 667.9 468 71.2
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.8e-189 665.6 468 71.6
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 7.0e-188 661.0 480 69.6
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.5e-187 658.7 469 69.5
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 5.9e-187 657.9 481 68.6
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.3e-186 656.8 470 70.4
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.9e-186 655.6 471 70.5
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 3.9e-186 655.2 476 68.3
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.6e-186 654.4 470 70.4
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.3e-185 652.1 470 70.0
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 4.3e-185 651.7 480 69.0
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.6e-184 649.8 480 67.5
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 2.1e-184 649.4 477 69.4
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 4.0e-183 645.2 468 70.3
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 8.9e-183 644.0 467 70.4
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.2e-181 639.4 466 68.7
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 5.4e-180 634.8 480 66.2
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.0e-179 632.9 481 65.9
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.0e-179 631.3 480 66.9
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 7.8e-179 630.9 474 67.5
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.0e-178 630.6 477 67.7
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 1.7e-178 629.8 480 64.4
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 6.6e-178 627.9 478 65.5
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 1.9e-177 626.3 452 69.9
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 9.5e-177 624.0 466 68.0
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.6e-176 623.2 477 65.4
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.8e-176 622.5 471 65.4
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 6.2e-176 621.3 473 66.4
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 8.0e-176 620.9 471 66.5
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.8e-175 619.8 471 65.6
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.8e-175 619.8 472 65.5
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 8.9e-175 617.5 480 65.6
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.5e-174 616.7 468 67.1
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.2e-173 612.8 471 65.4
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.4e-172 610.1 461 66.6
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 7.8e-171 604.4 478 64.6
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 3.0e-170 602.4 462 64.9
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 8.6e-170 600.9 479 66.4
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 9.5e-169 597.4 472 65.0
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.2e-168 597.0 478 64.9
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.4e-167 593.6 471 62.2
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.8e-167 593.2 471 64.8
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 3.4e-166 589.0 474 63.9
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.9e-164 583.2 462 64.7
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 3.9e-162 575.5 472 62.5
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.6e-161 571.6 470 61.7
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.6e-160 570.1 484 60.3
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 2.8e-160 569.3 465 61.9
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.1e-160 567.8 468 62.6
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.8e-159 566.6 468 62.6
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 4.4e-158 562.0 465 61.7
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.2e-157 559.7 468 61.5
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.2e-157 559.7 468 62.2
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 2.9e-157 559.3 475 60.4
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.4e-157 558.1 479 58.9
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.1e-156 557.4 473 60.7
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.4e-156 557.0 472 61.0
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.4e-156 555.1 457 61.7
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 3.5e-155 552.4 467 60.8
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 7.8e-155 551.2 451 59.0
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.0e-154 549.3 470 60.9
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 2.5e-153 546.2 468 62.0
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 5.6e-153 545.0 467 60.0
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 6.2e-152 541.6 467 60.6
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 8.1e-152 541.2 474 61.8
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.1e-151 540.8 467 59.1
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 5.3e-151 538.5 472 58.3
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.0e-150 536.6 467 60.0
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 4.4e-150 535.4 467 60.4
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 4.4e-150 535.4 467 60.6
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.3e-149 533.9 467 59.7
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-149 533.5 467 59.7
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.7e-149 533.5 471 60.5
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.2e-149 533.1 470 60.2
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 4.9e-149 531.9 471 57.5
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 4.9e-149 531.9 467 59.5
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.9e-148 530.0 469 58.2
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 9.3e-148 527.7 469 59.5
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.6e-147 526.9 467 60.0
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 2.7e-147 526.2 478 57.3
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.1e-146 521.9 467 58.0
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.9e-145 520.0 468 58.8
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.6e-144 516.9 471 58.2
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 2.1e-144 516.5 476 57.8
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 4.8e-144 515.4 469 58.0
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 4.8e-144 515.4 467 56.7
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 8.1e-144 514.6 469 58.0
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 2.4e-143 513.1 468 57.5
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 2.4e-143 513.1 468 57.5
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.4e-143 513.1 477 55.6
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 3.1e-143 512.7 469 57.6
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 5.3e-143 511.9 471 56.3
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.5e-142 510.4 474 57.0
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 2.6e-142 509.6 469 57.1
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.5e-142 508.8 468 56.6
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 4.5e-142 508.8 468 58.1
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 7.6e-142 508.1 467 59.1
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 9.9e-142 507.7 467 58.7
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 9.9e-142 507.7 471 56.9
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.7e-141 506.9 466 58.6
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-140 504.2 468 56.2
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.1e-140 504.2 468 56.4
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 2.4e-140 503.1 467 57.2
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 5.4e-140 501.9 467 57.0
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 5.4e-140 501.9 467 57.0
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-139 500.4 469 56.7
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-139 500.4 469 56.7
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 2.1e-139 500.0 467 57.0
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.8e-138 496.9 407 60.4
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 2.1e-136 490.0 475 53.7
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 2.8e-136 489.6 468 55.8
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 6.9e-135 485.0 400 60.8
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 4.6e-131 472.2 476 52.7
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 2.5e-129 466.5 474 52.5
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 3.3e-129 466.1 471 53.1
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 7.4e-129 464.9 465 53.8
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.8e-127 460.3 470 51.1
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 2.4e-127 459.9 472 49.6
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 6.9e-127 458.4 477 49.3
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.2e-126 457.6 461 53.1
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.5e-126 457.2 466 52.1
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.5e-126 455.7 467 52.0
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 5.0e-125 452.2 475 49.9
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 6.5e-125 451.8 481 52.2
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 6.5e-125 451.8 441 54.0
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 8.4e-125 451.4 468 51.3
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 3.2e-124 449.5 313 70.9
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 3.2e-124 449.5 313 70.9
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 3.2e-124 449.5 465 49.7
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 7.9e-123 444.9 440 54.1
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.8e-106 390.6 441 46.7
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 2.3e-106 390.2 468 48.7
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.1e-105 387.9 436 47.2
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.0e-97 360.5 498 41.4
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 7.4e-97 358.6 447 43.4
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.8e-95 354.0 467 42.6
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.1e-95 351.7 470 41.9
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.0e-93 348.2 472 45.3
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.4e-90 337.8 440 41.4
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 3.5e-86 323.2 338 55.3
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 1.8e-71 274.2 206 68.9
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.4e-71 272.7 343 43.1
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 5.0e-69 266.2 203 65.0
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 6.6e-69 265.8 203 65.0
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.4e-63 248.1 209 58.9
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 4.6e-54 216.5 165 65.5
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 7.8e-54 215.7 162 63.6
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 6.8e-50 202.6 221 50.2
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.8e-41 172.9 273 41.8
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 5.8e-33 146.4 279 36.6
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 1.3e-27 128.6 136 47.1
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 3.2e-23 114.0 123 51.2
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 7.4e-20 102.8 88 59.1
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 1.2e-17 95.5 90 55.6
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.3e-13 82.0 95 42.1
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 5.9e-09 66.6 174 32.8
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.3e-08 65.5 67 46.3
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 2.5e-07 61.2 47 59.6
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 3.2e-07 60.8 91 45.1
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 3.2e-07 60.8 64 56.2


User provided reference genes

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