Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc19.17 Carica papaya HOM05D004809 ORTHO05D006732 6.8e-122 440.7 219 100.0
Prupe.2G084800 Prunus persica HOM05D004809 ORTHO05D006732 3.9e-61 238.8 254 51.6
CiPaw.13G037200 Carya illinoinensis HOM05D004809 ORTHO05D006732 4.3e-60 235.3 258 50.8
Dinv20809 Davidia involucrata HOM05D004809 ORTHO05D006732 5.7e-60 235.0 260 48.8
Manes.07G089701 Manihot esculenta HOM05D004809 ORTHO05D006732 2.8e-59 232.6 258 51.2
Gorai.008G098400 Gossypium raimondii HOM05D004809 ORTHO05D006732 3.7e-59 232.3 257 51.8
QL04p042558 Quercus lobata HOM05D004809 ORTHO05D006732 6.3e-59 231.5 259 50.6
QL04p042573 Quercus lobata HOM05D004809 ORTHO05D006732 1.8e-58 229.9 259 50.2
Thecc.10G104900 Theobroma cacao HOM05D004809 ORTHO05D006732 4.1e-58 228.8 257 50.6
Duzib106G1880 Durio zibethinus HOM05D004809 ORTHO05D006732 1.2e-57 227.3 280 47.9
Sabra08G0016600 Salix brachista HOM05D004809 ORTHO05D006732 1.5e-57 226.9 259 51.0
Gohir.D12G091000 Gossypium hirsutum HOM05D004809 ORTHO05D006732 2.6e-57 226.1 257 51.4
Potri.008G024700 Populus trichocarpa HOM05D004809 ORTHO05D006732 2.2e-56 223.0 258 50.8
CSS0050047 Camellia sinensis var. sinensis HOM05D004809 ORTHO05D006732 9.3e-55 217.6 261 47.1
GSVIVG01034738001 Vitis vinifera HOM05D004809 ORTHO05D006732 1.6e-54 216.9 263 47.9
Actinidia18582 Actinidia chinensis HOM05D004809 ORTHO05D006732 2.1e-54 216.5 261 46.7
MD07G1067800 Malus domestica HOM05D004809 ORTHO05D006732 3.6e-54 215.7 258 47.7
Lj2A29T80 Lonicera japonica HOM05D004809 ORTHO05D006732 6.1e-54 214.9 260 47.3
TAR636G3234 Trochodendron aralioides HOM05D004809 ORTHO05D006732 2.3e-53 213.0 258 46.1
MD02G1248400 Malus domestica HOM05D004809 ORTHO05D006732 3.9e-53 212.2 254 45.7
FAN08G1717 Fragaria x ananassa HOM05D004809 ORTHO05D006732 1.9e-52 209.9 257 47.5
Rhsim03G0105000 Rhododendron simsii HOM05D004809 ORTHO05D006732 2.5e-52 209.5 261 44.8
Atru.chr12.976 Acer truncatum HOM05D004809 ORTHO05D006732 4.3e-52 208.8 259 45.9
ECA232G3125 Erigeron canadensis HOM05D004809 ORTHO05D006732 4.3e-52 208.8 258 47.3
Eucgr.G02708 Eucalyptus grandis HOM05D004809 ORTHO05D006732 4.3e-52 208.8 254 46.5
Hma1.2p1_0352F.1_g133010 Hydrangea macrophylla HOM05D004809 ORTHO05D006732 2.8e-51 206.1 260 45.8
FvH4_5g38020 Fragaria vesca HOM05D004809 ORTHO05D006732 8.2e-51 204.5 259 46.3
FAN18G3489 Fragaria x ananassa HOM05D004809 ORTHO05D006732 8.2e-51 204.5 259 46.3
FAN04G1536 Fragaria x ananassa HOM05D004809 ORTHO05D006732 1.4e-50 203.8 259 47.1
Lsat_1_v5_gn_0_7340 Lactuca sativa HOM05D004809 ORTHO05D006732 1.0e-48 197.6 258 46.1
Nn6g35016 Nelumbo nucifera HOM05D004809 ORTHO05D006732 2.9e-48 196.1 261 46.0
Haze_02592 Corylus avellana HOM05D004809 ORTHO05D006732 5.0e-48 195.3 316 39.9
arahy.Tifrunner.gnm1.ann1.9JEX28 Arachis hypogaea HOM05D004809 ORTHO05D006732 4.2e-47 192.2 255 43.5
arahy.Tifrunner.gnm1.ann1.RW77QZ Arachis hypogaea HOM05D004809 ORTHO05D006732 9.4e-47 191.0 255 43.1
Glyma.20G187700 Glycine max HOM05D004809 ORTHO05D006732 1.2e-46 190.7 255 43.9
Sed0005221 Sechium edule HOM05D004809 ORTHO05D006732 6.1e-46 188.3 262 41.2
Sc06g0002220 Simmondsia chinensis HOM05D004809 ORTHO05D006732 1.4e-45 187.2 257 43.2
Solyc11g007320.2 Solanum lycopersicum HOM05D004809 ORTHO05D006732 1.4e-45 187.2 259 43.6
Sopen11g003210 Solanum pennellii HOM05D004809 ORTHO05D006732 1.4e-45 187.2 259 43.6
Migut.F00896 Erythranthe guttata HOM05D004809 ORTHO05D006732 3.9e-45 185.7 256 43.0
Nitab4.5_0000962g0070 Nicotiana tabacum HOM05D004809 ORTHO05D006732 3.9e-45 185.7 259 43.2
CANSAT56G2003 Cannabis sativa HOM05D004809 ORTHO05D006732 8.8e-45 184.5 258 43.8
TPR.G2503 Trifolium pratense HOM05D004809 ORTHO05D006732 8.8e-45 184.5 255 42.0
Peaxi162Scf00244g01123 Petunia axillaris HOM05D004809 ORTHO05D006732 1.5e-44 183.7 258 41.9
Lalb_Chr02g0151411 Lupinus albus HOM05D004809 ORTHO05D006732 2.0e-44 183.3 255 41.2
Ca_10498_v3 Cicer arietinum L. HOM05D004809 ORTHO05D006732 5.7e-44 181.8 255 42.0
Phvul.007G104300 Phaseolus vulgaris HOM05D004809 ORTHO05D006732 9.7e-44 181.0 255 41.6
Cc02_g09980 Coffea canephora HOM05D004809 ORTHO05D006732 4.8e-43 178.7 257 42.0
Medtr1g492850 Medicago truncatula HOM05D004809 ORTHO05D006732 4.8e-43 178.7 255 41.2
Oeu015034.1 Olea europaea HOM05D004809 ORTHO05D006732 6.3e-43 178.3 300 39.3
SalBow6G1224 Salvia bowleyana HOM05D004809 ORTHO05D006732 1.8e-42 176.8 257 42.4
COL.COLO4_20964 Corchorus olitorius HOM05D004809 ORTHO05D006732 3.1e-42 176.0 211 47.9
PGR142G2585 Punica granatum HOM05D004809 ORTHO05D006732 4.1e-42 175.6 258 41.5
ATR0820G085 Amborella trichopoda HOM05D004809 ORTHO05D006732 2.0e-41 173.3 260 41.5
DCAR_028402 Daucus carota HOM05D004809 ORTHO05D006732 2.0e-41 173.3 254 41.3
VMungo0720G0319 Vigna mungo HOM05D004809 ORTHO05D006732 2.0e-41 173.3 253 41.5
CAN.G534.16 Capsicum annuum HOM05D004809 ORTHO05D006732 3.4e-41 172.6 257 40.9
Ciclev10031499m.g Citrus clementina HOM05D004809 ORTHO05D006732 4.5e-41 172.2 210 48.1
BcaB02g09358 Brassica carinata HOM05D004809 ORTHO05D006732 5.9e-41 171.8 261 41.8
ClCG05G021650 Citrullus lanatus HOM05D004809 ORTHO05D006732 5.9e-41 171.8 264 39.0
HanXRQChr05g0146831 Helianthus annuus HOM05D004809 ORTHO05D006732 5.9e-41 171.8 238 42.4
MBI17_g00711_MAGBIO Magnolia biondii HOM05D004809 ORTHO05D006732 1.3e-40 170.6 258 43.4
Lj5g0024267 Lotus japonicus HOM05D004809 ORTHO05D006732 1.7e-40 170.2 255 40.0
BcaC02g11751 Brassica carinata HOM05D004809 ORTHO05D006732 2.9e-40 169.5 259 40.5
BolC4t22822H Brassica oleracea HOM05D004809 ORTHO05D006732 6.5e-40 168.3 261 40.2
Sp4g18640 Schrenkiella parvula HOM05D004809 ORTHO05D006732 5.5e-39 165.2 258 41.9
C04p11750 Brassica napus HOM05D004809 ORTHO05D006732 6.1e-38 161.8 279 37.6
BraA05t19899Z Brassica rapa HOM05D004809 ORTHO05D006732 6.1e-38 161.8 262 40.1
Thhalv10017936m.g Eutrema salsugineum HOM05D004809 ORTHO05D006732 1.0e-37 161.0 258 39.9
HPP92_026096 Vanilla planifolia HOM05D004809 ORTHO05D006732 1.4e-37 160.6 260 38.8
Ah.04g163730 Amaranthus hybridus HOM05D004809 ORTHO05D006732 5.2e-37 158.7 262 40.5
A05p09490 Brassica napus HOM05D004809 ORTHO05D006732 5.2e-37 158.7 258 39.5
CsaV3_5G035620 Cucumis sativus L. HOM05D004809 ORTHO05D006732 1.1e-36 157.5 245 37.6
Hma1.2p1_0352F.1_g133000 Hydrangea macrophylla HOM05D004809 ORTHO05D006732 2.0e-36 156.8 158 53.2
CARHR130660 Cardamine hirsuta HOM05D004809 ORTHO05D006732 3.3e-36 156.0 260 38.8
Zm00001eb063700 Zea mays HOM05D004809 ORTHO05D006732 4.4e-36 155.6 256 38.7
SGA_v2.0_scaffold62G21351 Striga asiatica HOM05D004809 ORTHO05D006732 9.7e-36 154.5 301 34.2
Nitab4.5_0005390g0010 Nicotiana tabacum HOM05D004809 ORTHO05D006732 1.3e-35 154.1 210 44.3
AT2G36360 Arabidopsis thaliana HOM05D004809 ORTHO05D006732 2.8e-35 152.9 257 38.1
Carub.0004s1815 Capsella rubella HOM05D004809 ORTHO05D006732 3.7e-35 152.5 257 38.5
Os03g0835800 Oryza sativa ssp. japonica HOM05D004809 ORTHO05D006732 3.1e-34 149.4 256 37.5
RcHm_v2.0_Chr1g0333101 Rosa chinensis HOM05D004809 ORTHO05D006732 1.6e-33 147.1 141 56.0
RcHm_v2.0_Chr1g0333991 Rosa chinensis HOM05D004809 ORTHO05D006732 3.5e-33 146.0 141 55.3
EL10Ac4g08666 Beta vulgaris HOM05D004809 ORTHO05D006732 5.9e-33 145.2 243 38.3
unitig_0.g851 Utricularia gibba HOM05D004809 ORTHO05D006732 1.9e-31 140.2 257 38.5
Aqoxy4G02860 Aquilegia oxysepala HOM05D004809 ORTHO05D006732 8.0e-30 134.8 238 34.9
Mapoly0052s0089 Marchantia polymorpha HOM05D004809 ORTHO05D006732 3.0e-29 132.9 259 34.4
Duzib114G0297 Durio zibethinus HOM05D004809 ORTHO05D006732 9.7e-28 127.9 127 55.1
Pp3c12_16110 Physcomitrium patens HOM05D004809 ORTHO05D006732 1.1e-26 124.4 264 32.2
Pp3c12_16113 Physcomitrium patens HOM05D004809 ORTHO05D006732 1.1e-26 124.4 264 32.2
AUR62041546 Chenopodium quinoa HOM05D004809 ORTHO05D006732 4.1e-26 122.5 233 37.3
CSS0021630 Camellia sinensis var. sinensis HOM05D004809 ORTHO05D006732 9.1e-26 121.3 122 54.1
vmacro07229 Vaccinium macrocarpon HOM05D004809 ORTHO05D006732 1.6e-25 120.6 291 30.9
AL4G32520 Arabidopsis lyrata HOM05D004809 ORTHO05D006732 3.5e-25 119.4 204 39.2
PGSC0003DMG400019479 Solanum tuberosum HOM05D004809 ORTHO05D006732 1.0e-24 117.9 196 39.3
Lsat_1_v5_gn_3_126940 Lactuca sativa HOM05D004809 ORTHO05D006732 1.5e-23 114.0 192 39.6
Hund06767 Selenicereus undatus HOM05D004809 ORTHO05D006732 1.5e-23 114.0 116 51.7
Aa31LG5G21540 Aethionema arabicum HOM05D004809 ORTHO05D006732 1.6e-22 110.5 229 35.4
Psat6g176720 Pisum sativum HOM05D004809 ORTHO05D006732 6.8e-21 105.1 164 38.4
FAN08G1494 Fragaria x ananassa HOM05D004809 ORTHO05D006732 4.4e-20 102.4 124 50.0
SHI21283 Sapria himalayana HOM05D004809 ORTHO05D006732 5.7e-20 102.1 184 36.4
SMO174G0255 Selaginella moellendorffii HOM05D004809 ORTHO05D006732 2.8e-19 99.8 239 31.8
A05p09440 Brassica napus HOM05D004809 ORTHO05D006732 9.1e-18 94.7 212 31.6
AagrBONN_evm.TU.Sc2ySwM_228.3607 Anthoceros agrestis HOM05D004809 ORTHO05D006732 3.0e-13 79.7 260 26.5
CsaV3_7G016260 Cucumis sativus L. HOM05D004809 ORTHO05D006732 3.0e-13 79.7 138 39.1
RcHm_v2.0_Chr1g0333031 Rosa chinensis HOM05D004809 ORTHO05D006732 5.7e-12 75.5 72 55.6
Oeu030502.1 Olea europaea HOM05D004809 ORTHO05D006732 9.8e-12 74.7 58 58.6
Lsat_1_v5_gn_9_14041 Lactuca sativa HOM05D004809 ORTHO05D006732 5.4e-10 68.9 41 68.3
FvH4_5g38190 Fragaria vesca HOM05D004809 ORTHO05D006732 9.2e-10 68.2 35 82.9
Lsat_1_v5_gn_1_19021 Lactuca sativa HOM05D004809 ORTHO05D006732 9.2e-10 68.2 36 72.2
RcHm_v2.0_Chr1g0333111 Rosa chinensis HOM05D004809 ORTHO05D006732 2.0e-09 67.0 28 96.4
RcHm_v2.0_Chr1g0333981 Rosa chinensis HOM05D004809 ORTHO05D006732 2.0e-09 67.0 28 96.4
Lsat_1_v5_gn_4_48181 Lactuca sativa HOM05D004809 ORTHO05D006732 4.5e-09 65.9 28 89.3
Lsat_1_v5_gn_7_3121 Lactuca sativa HOM05D003089 ORTHO05D006732 4.5e-09 65.9 28 89.3
MELO3C012363.2 Cucumis melo HOM05D004809 ORTHO05D006732 7.8e-09 65.1 28 92.9
AL4G34360 Arabidopsis lyrata HOM05D004809 ORTHO05D006732 1.9e-07 60.5 45 62.2
FvH4_7g05461 Fragaria vesca HOM05D004809 ORTHO05D035441 7.3e-07 58.5 48 58.3
FAN21G2933 Fragaria x ananassa HOM05D004809 ORTHO05D035441 7.3e-07 58.5 48 58.3
CBR_g30411 Chara braunii HOM05D004809 ORTHO05D006732 2.8e-06 56.6 32 68.8


User provided reference genes

Program Settings