Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 1.5e-272 942.2 461 100.0
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 2.5e-219 765.4 450 78.9
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 5.3e-217 757.7 450 78.7
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 7.1e-214 747.3 458 75.5
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.1e-213 745.7 458 76.4
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 7.9e-213 743.8 449 76.8
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.8e-212 742.7 458 75.3
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.8e-212 742.7 450 77.6
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.1e-212 741.1 458 75.3
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.6e-210 736.1 449 76.6
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.1e-210 735.7 450 76.7
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 2.8e-210 735.3 458 76.2
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 3.7e-210 734.9 445 76.9
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.8e-209 732.6 456 74.1
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 2.4e-209 732.3 452 75.4
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.4e-208 728.4 454 75.6
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.0e-207 726.9 461 73.8
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 5.5e-206 721.1 460 73.9
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.0e-204 716.8 458 72.1
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.0e-204 716.8 459 74.5
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.3e-204 715.7 455 72.3
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.3e-204 715.7 455 72.3
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.3e-204 715.7 459 72.8
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 3.9e-204 714.9 455 72.3
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 6.7e-204 714.1 458 72.3
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 8.7e-204 713.8 460 73.5
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.5e-203 713.0 459 74.7
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.9e-203 712.6 455 71.9
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 5.7e-203 711.1 447 72.7
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 7.4e-203 710.7 454 72.7
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 9.7e-203 710.3 454 73.1
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.6e-202 709.5 451 72.1
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.8e-202 708.8 455 71.6
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.8e-202 708.0 450 74.4
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 6.3e-202 707.6 451 73.6
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 1.8e-201 706.1 455 72.7
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 5.3e-201 704.5 457 70.7
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.5e-200 703.0 451 71.0
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 2.0e-200 702.6 446 72.9
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 3.4e-200 701.8 455 70.5
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 4.5e-200 701.4 451 72.3
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 5.9e-200 701.0 448 73.4
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 7.7e-200 700.7 452 72.3
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.0e-199 700.3 456 72.4
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.7e-199 699.5 443 73.8
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 2.2e-199 699.1 440 75.0
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.8e-199 698.4 456 71.9
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 6.5e-199 697.6 451 72.5
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 8.5e-199 697.2 450 72.4
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 1.4e-198 696.4 446 72.6
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 2.5e-198 695.7 446 73.5
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 5.5e-198 694.5 453 71.5
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 9.4e-198 693.7 450 71.8
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.2e-197 693.3 458 70.7
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.2e-197 693.3 448 72.8
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 2.1e-197 692.6 454 70.3
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 2.7e-197 692.2 444 71.6
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 3.6e-197 691.8 459 71.2
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 3.6e-197 691.8 487 66.3
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.6e-197 691.4 455 70.1
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 4.6e-197 691.4 450 70.7
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 7.9e-197 690.6 450 70.9
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.4e-196 689.9 493 67.1
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 2.3e-196 689.1 454 70.0
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 5.1e-196 688.0 454 69.6
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 5.1e-196 688.0 447 70.5
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 6.7e-196 687.6 452 69.7
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.5e-195 686.4 447 70.7
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 2.0e-195 686.0 449 70.8
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 3.3e-195 685.3 442 72.9
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 1.7e-194 682.9 449 70.8
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.2e-194 682.6 446 71.7
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 2.8e-194 682.2 448 71.0
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 2.8e-194 682.2 447 69.8
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 1.1e-193 680.2 440 72.3
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 1.4e-193 679.9 443 70.4
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.8e-193 679.5 451 70.1
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 2.4e-193 679.1 454 70.0
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 5.3e-193 677.9 459 69.1
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.2e-192 676.8 449 69.5
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 1.2e-192 676.8 436 71.1
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 2.0e-192 676.0 447 70.2
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 2.6e-192 675.6 441 72.3
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.0e-191 673.7 410 76.6
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.0e-191 673.7 478 67.6
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.7e-191 672.9 479 67.2
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 2.9e-191 672.2 448 70.1
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 8.5e-191 670.6 458 68.6
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 8.5e-191 670.6 449 69.7
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 8.5e-191 670.6 449 69.7
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 8.5e-191 670.6 449 69.7
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 8.5e-191 670.6 454 68.7
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.4e-190 669.8 459 68.8
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 2.5e-190 669.1 449 69.0
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 4.2e-190 668.3 449 69.0
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 2.1e-189 666.0 455 68.6
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 3.6e-189 665.2 449 69.3
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 4.7e-189 664.8 446 70.6
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 1.0e-188 663.7 507 64.1
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 2.3e-188 662.5 455 67.7
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 3.9e-188 661.8 456 68.2
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.1e-187 660.2 449 68.8
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.3e-187 658.7 551 58.3
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.3e-186 656.8 446 68.6
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.7e-186 656.4 449 68.6
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 4.8e-186 654.8 453 68.0
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 7.7e-184 647.5 409 72.6
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.0e-183 647.1 494 62.8
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.5e-182 643.3 451 67.2
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.6e-181 638.6 472 64.6
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 8.0e-181 637.5 450 67.1
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.5e-179 633.3 450 66.7
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.5e-179 633.3 468 64.3
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.6e-179 632.5 409 73.3
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.8e-178 629.0 406 71.2
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 6.3e-178 627.9 525 59.8
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.1e-177 627.1 472 63.6
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 9.1e-177 624.0 457 65.4
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.0e-176 622.9 445 66.1
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 4.5e-176 621.7 455 65.7
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.0e-175 620.5 387 72.6
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.0e-175 620.5 445 65.6
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.3e-175 620.2 479 62.6
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.9e-175 619.0 377 74.3
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 4.2e-174 615.1 603 52.6
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 6.1e-173 611.3 453 64.5
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 6.3e-170 601.3 425 68.0
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.8e-169 599.7 448 64.1
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.8e-169 599.7 462 62.6
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 1.5e-166 590.1 427 67.2
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.6e-165 586.6 423 64.5
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.3e-162 574.7 447 62.4
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.8e-161 573.2 450 63.1
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.0e-144 516.5 447 57.5
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 4.6e-144 515.4 476 53.6
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 4.0e-140 502.3 455 55.2
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 4.6e-136 488.8 447 51.9
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.7e-135 486.9 320 73.1
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.3e-134 482.6 364 63.5
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 6.2e-133 478.4 442 52.5
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.3e-130 470.7 453 49.7
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 7.6e-123 444.9 406 51.7
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 2.1e-117 426.8 502 46.0
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 9.0e-116 421.4 303 66.3
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 4.6e-104 382.5 264 69.3
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 3.7e-85 319.7 296 54.1
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.9e-79 299.7 181 72.9
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.7e-69 267.7 198 65.2
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 1.7e-53 214.5 198 54.0
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 9.5e-49 198.7 151 62.3
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 2.7e-43 180.6 302 36.8
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 2.9e-42 177.2 101 81.2
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 2.3e-39 167.5 443 30.9
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 3.4e-38 163.7 106 67.9
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 9.8e-38 162.2 149 58.4
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 4.7e-32 143.3 112 65.2
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 8.0e-32 142.5 112 65.2
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 6.8e-31 139.4 113 61.1
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 5.4e-28 129.8 79 73.4
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.7e-26 124.8 86 65.1
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 5.2e-23 113.2 76 65.8
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 6.8e-23 112.8 71 70.4
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 1.2e-22 112.1 99 54.5
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.6e-19 101.7 62 72.6
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 5.1e-18 96.7 70 71.4
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.5e-17 94.4 110 50.9
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 2.2e-13 81.3 48 75.0
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.7e-11 74.3 45 73.3
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 3.9e-10 70.5 49 61.2
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 5.1e-10 70.1 49 61.2
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.2e-08 65.5 44 61.4
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.6e-08 65.1 39 76.9
PSO063G3403 Papaver somniferum HOM05D000240 ORTHO05D002721 7.6e-06 56.2 59 42.4
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 7.6e-06 56.2 33 60.6


User provided reference genes

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