Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 5.6e-35 150.6 88 100.0
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 2.6e-16 88.6 69 69.6
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.9e-15 85.1 68 69.1
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 6.5e-15 84.0 69 66.7
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 8.5e-15 83.6 68 67.6
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.1e-14 83.2 69 63.8
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.1e-14 83.2 69 65.2
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.1e-14 83.2 68 67.6
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.9e-14 82.4 71 62.0
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.9e-14 82.4 71 62.0
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.9e-14 82.4 70 64.3
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.5e-14 82.0 70 65.7
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 4.2e-14 81.3 69 65.2
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 7.2e-14 80.5 83 53.0
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.2e-14 80.5 70 62.9
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.2e-14 80.5 70 62.9
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 7.2e-14 80.5 69 65.2
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 9.4e-14 80.1 70 62.9
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 9.4e-14 80.1 73 64.4
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 9.4e-14 80.1 69 65.2
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 1.2e-13 79.7 68 64.7
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.6e-13 79.3 62 67.7
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 2.7e-13 78.6 69 60.9
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 2.7e-13 78.6 78 57.7
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 4.6e-13 77.8 65 69.2
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 4.6e-13 77.8 71 62.0
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 6.1e-13 77.4 69 60.9
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 6.1e-13 77.4 71 63.4
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 7.9e-13 77.0 71 60.6
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.0e-12 76.6 71 63.4
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.0e-12 76.6 63 61.9
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.0e-12 76.6 62 64.5
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.4e-12 76.3 62 62.9
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.4e-12 76.3 64 64.1
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.4e-12 76.3 69 62.3
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 2.3e-12 75.5 71 62.0
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 2.3e-12 75.5 71 62.0
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 2.3e-12 75.5 71 62.0
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.3e-12 75.5 76 57.9
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 2.3e-12 75.5 62 62.9
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 3.0e-12 75.1 71 62.0
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 3.0e-12 75.1 70 61.4
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 3.9e-12 74.7 71 60.6
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 3.9e-12 74.7 70 62.9
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 5.1e-12 74.3 70 62.9
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 5.1e-12 74.3 61 63.9
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 6.7e-12 73.9 64 60.9
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 6.7e-12 73.9 62 62.9
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 6.7e-12 73.9 69 58.0
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 6.7e-12 73.9 61 62.3
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 6.7e-12 73.9 61 62.3
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 8.8e-12 73.6 71 60.6
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 8.8e-12 73.6 71 60.6
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.1e-11 73.2 70 61.4
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 1.5e-11 72.8 62 64.5
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.5e-11 72.8 68 57.4
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.0e-11 72.4 71 57.7
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 2.5e-11 72.0 69 59.4
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 2.5e-11 72.0 62 59.7
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 4.3e-11 71.2 59 66.1
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 4.3e-11 71.2 71 57.7
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 4.3e-11 71.2 71 57.7
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 4.3e-11 71.2 70 60.0
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 4.3e-11 71.2 62 67.7
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 4.3e-11 71.2 62 67.7
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 4.3e-11 71.2 69 63.8
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 5.7e-11 70.9 71 57.7
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 5.7e-11 70.9 71 57.7
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 5.7e-11 70.9 66 60.6
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 7.4e-11 70.5 71 59.2
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 7.4e-11 70.5 71 59.2
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 7.4e-11 70.5 76 56.6
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 7.4e-11 70.5 63 63.5
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 9.7e-11 70.1 69 60.9
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 9.7e-11 70.1 70 60.0
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 9.7e-11 70.1 69 60.9
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.3e-10 69.7 72 59.7
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 1.7e-10 69.3 71 57.7
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 2.2e-10 68.9 69 55.1
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 2.2e-10 68.9 71 57.7
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 2.2e-10 68.9 69 59.4
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.8e-10 68.6 64 60.9
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 2.8e-10 68.6 70 58.6
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 2.8e-10 68.6 71 57.7
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.8e-10 68.6 71 54.9
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.8e-10 68.6 69 58.0
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 3.7e-10 68.2 64 60.9
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.7e-10 68.2 60 58.3
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.7e-10 68.2 63 58.7
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 6.3e-10 67.4 69 55.1
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 1.1e-09 66.6 70 57.1
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.1e-09 66.6 86 47.7
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.1e-09 66.6 64 64.1
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.1e-09 66.6 70 52.9
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.4e-09 66.2 79 49.4
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.4e-09 66.2 79 55.7
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.4e-09 66.2 65 61.5
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.8e-09 65.9 66 54.5
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.4e-09 65.5 64 60.9
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 2.4e-09 65.5 74 54.1
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.1e-09 65.1 66 60.6
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 3.1e-09 65.1 80 47.5
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 4.1e-09 64.7 64 59.4
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 4.1e-09 64.7 69 53.6
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 4.1e-09 64.7 69 60.9
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 5.3e-09 64.3 60 61.7
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 5.3e-09 64.3 60 61.7
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 5.3e-09 64.3 64 51.6
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.3e-09 64.3 69 56.5
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 5.3e-09 64.3 67 50.7
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 6.9e-09 63.9 75 50.7
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 6.9e-09 63.9 60 61.7
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 9.1e-09 63.5 72 52.8
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.2e-08 63.2 72 52.8
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.2e-08 63.2 72 52.8
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.2e-08 63.2 72 52.8
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.2e-08 63.2 59 61.0
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 1.2e-08 63.2 71 54.9
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.5e-08 62.8 67 56.7
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 1.5e-08 62.8 70 52.9
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.5e-08 62.8 61 60.7
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 2.0e-08 62.4 79 48.1
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 5.9e-08 60.8 62 56.5
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 5.9e-08 60.8 70 51.4
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.7e-08 60.5 62 59.7
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 1.0e-07 60.1 64 53.1
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.3e-07 59.7 68 51.5
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.3e-07 59.7 70 52.9
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.2e-07 58.9 75 53.3
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 2.9e-07 58.5 64 53.1
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 2.9e-07 58.5 64 51.6
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.9e-07 58.5 68 54.4
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 2.9e-07 58.5 85 45.9
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 5.0e-07 57.8 62 56.5
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 5.0e-07 57.8 62 54.8
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 6.5e-07 57.4 63 47.6
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 6.5e-07 57.4 67 55.2
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 8.5e-07 57.0 62 51.6
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.1e-06 56.6 64 50.0
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 1.4e-06 56.2 67 52.2
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 2.5e-06 55.5 62 53.2
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 7.2e-06 53.9 68 50.0


User provided reference genes

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