Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 1.5e-92 342.8 176 100.0
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 5.2e-48 194.9 155 67.7
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 2.4e-45 186.0 155 67.1
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 1.2e-44 183.7 152 63.8
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 1.7e-43 179.9 155 61.9
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 3.0e-43 179.1 157 64.3
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 5.0e-43 178.3 151 64.9
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 6.6e-43 177.9 157 61.8
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 6.6e-43 177.9 176 59.7
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 8.6e-43 177.6 151 65.6
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 8.6e-43 177.6 151 65.6
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 8.6e-43 177.6 151 65.6
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 8.6e-43 177.6 157 63.1
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.9e-42 176.4 151 65.6
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 1.9e-42 176.4 156 67.9
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 3.3e-42 175.6 154 63.0
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 4.3e-42 175.3 153 66.7
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 4.3e-42 175.3 152 66.4
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.3e-42 175.3 155 63.2
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 4.3e-42 175.3 155 63.2
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 5.6e-42 174.9 178 56.7
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 9.5e-42 174.1 157 60.5
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 9.5e-42 174.1 154 61.0
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 1.6e-41 173.3 166 58.4
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 2.1e-41 172.9 156 60.9
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 4.7e-41 171.8 154 59.7
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 6.2e-41 171.4 156 62.2
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 6.2e-41 171.4 153 60.8
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.1e-40 170.6 153 61.4
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 1.1e-40 170.6 147 68.7
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 1.1e-40 170.6 147 68.7
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.4e-40 170.2 163 58.9
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 3.1e-40 169.1 156 57.7
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 4.0e-40 168.7 155 60.0
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 6.8e-40 167.9 152 62.5
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 8.9e-40 167.5 157 61.8
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.5e-39 166.8 152 57.9
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 1.5e-39 166.8 158 60.1
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 1.5e-39 166.8 155 59.4
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 2.6e-39 166.0 157 61.1
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 3.4e-39 165.6 152 63.2
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 7.5e-39 164.5 155 60.6
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 9.9e-39 164.1 157 60.5
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.3e-38 163.7 155 57.4
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 1.3e-38 163.7 157 61.1
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 2.2e-38 162.9 160 59.4
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 2.2e-38 162.9 160 61.9
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 6.4e-38 161.4 153 58.8
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.1e-37 160.6 157 61.1
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 2.4e-37 159.5 156 58.3
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 3.2e-37 159.1 158 58.9
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 7.1e-37 157.9 148 59.5
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 9.2e-37 157.5 148 59.5
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.2e-36 157.1 157 57.3
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 1.2e-36 157.1 169 55.6
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.6e-36 156.8 144 60.4
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.6e-36 156.8 151 60.9
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 1.6e-36 156.8 151 60.3
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 7.8e-36 154.5 148 60.1
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 1.0e-35 154.1 150 56.0
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 1.3e-35 153.7 207 45.9
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 2.3e-35 152.9 142 61.3
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 8.6e-35 151.0 153 56.9
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.5e-34 150.2 146 58.9
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 1.9e-34 149.8 153 58.8
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.9e-34 149.8 155 55.5
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 4.3e-34 148.7 177 48.6
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 4.3e-34 148.7 185 50.3
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 5.6e-34 148.3 165 56.4
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 5.6e-34 148.3 155 56.8
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 1.6e-33 146.7 159 56.6
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 2.1e-33 146.4 155 53.5
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 3.6e-33 145.6 154 58.4
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 3.6e-33 145.6 142 59.2
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 3.6e-33 145.6 157 54.8
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 4.7e-33 145.2 161 55.9
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 4.7e-33 145.2 151 54.3
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 4.7e-33 145.2 159 56.0
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 4.7e-33 145.2 157 54.8
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 4.7e-33 145.2 154 53.9
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 6.2e-33 144.8 154 58.4
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 6.2e-33 144.8 154 58.4
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 1.4e-32 143.7 144 56.2
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 4.0e-32 142.1 142 60.6
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 6.8e-32 141.4 150 55.3
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 8.9e-32 141.0 174 50.6
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 8.9e-32 141.0 146 53.4
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 8.9e-32 141.0 156 53.2
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 2.0e-31 139.8 155 52.3
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 2.9e-30 136.0 155 52.3
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 2.9e-30 136.0 155 52.3
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.9e-30 136.0 210 45.7
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 3.8e-30 135.6 145 51.7
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 3.8e-30 135.6 207 45.4
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 4.9e-30 135.2 122 59.0
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 2.4e-29 132.9 181 45.9
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 2.4e-29 132.9 147 50.3
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 3.2e-29 132.5 117 60.7
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 7.1e-29 131.3 149 51.0
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 1.2e-28 130.6 123 57.7
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 4.6e-28 128.6 137 57.7
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 4.6e-28 128.6 147 53.7
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 2.3e-27 126.3 152 52.6
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 1.5e-26 123.6 152 47.4
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 2.5e-26 122.9 235 37.0
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 3.3e-26 122.5 146 55.5
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 1.6e-25 120.2 155 50.3
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.4e-24 117.1 146 50.7
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 2.4e-24 116.3 152 46.7
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 1.5e-23 113.6 152 50.0
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.0e-23 113.2 199 40.2
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 1.3e-22 110.5 127 54.3
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 1.3e-22 110.5 124 50.0
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 5.4e-21 105.1 168 47.0
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 1.2e-20 104.0 151 44.4
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 7.8e-20 101.3 118 48.3
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 7.8e-20 101.3 93 67.7
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 1.3e-19 100.5 146 45.9
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 6.6e-19 98.2 189 39.7
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.9e-18 96.7 145 44.1
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 3.6e-17 92.4 117 47.0
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 8.1e-17 91.3 149 43.6
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 1.4e-16 90.5 108 49.1
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 3.1e-16 89.4 94 53.2
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 4.0e-16 89.0 119 43.7
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 1.5e-15 87.0 132 42.4
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 2.6e-15 86.3 88 54.5
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 4.5e-15 85.5 58 70.7
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 7.6e-15 84.7 78 57.7
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 4.9e-14 82.0 105 45.7
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 6.4e-14 81.6 91 50.5
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 6.4e-14 81.6 87 51.7
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 6.4e-14 81.6 234 32.5
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 6.0e-12 75.1 85 49.4
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 6.0e-12 75.1 133 39.8
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 7.9e-12 74.7 192 33.3
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 1.5e-10 70.5 62 58.1
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 1.9e-10 70.1 82 47.6
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 3.7e-09 65.9 57 57.9
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 8.1e-09 64.7 63 54.0
SMO137G0159 Selaginella moellendorffii HOM05D004925 ORTHO05D005643 1.4e-08 63.9 122 35.2


User provided reference genes

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