Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 3.1e-23 111.3 71 100.0
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 8.6e-18 93.2 71 87.3
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.4e-15 85.9 69 81.2
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 3.1e-15 84.7 69 69.6
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.5e-14 82.4 69 82.6
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.5e-14 82.4 69 66.7
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 2.0e-14 82.0 69 68.1
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 2.0e-14 82.0 69 68.1
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 3.4e-14 81.3 69 68.1
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 4.4e-14 80.9 64 68.8
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 4.4e-14 80.9 69 82.6
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 4.4e-14 80.9 69 79.7
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 4.4e-14 80.9 69 68.1
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 5.8e-14 80.5 69 66.7
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 9.9e-14 79.7 69 69.6
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 1.3e-13 79.3 63 69.8
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 1.3e-13 79.3 63 69.8
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 1.7e-13 79.0 66 63.6
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 1.7e-13 79.0 66 63.6
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 1.7e-13 79.0 69 65.2
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 4.9e-13 77.4 66 62.1
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 4.9e-13 77.4 66 62.1
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 4.9e-13 77.4 66 62.1
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 6.4e-13 77.0 69 78.3
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 8.3e-13 76.6 65 64.6
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.4e-12 75.9 64 76.6
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 1.9e-12 75.5 66 75.8
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 1.9e-12 75.5 69 75.4
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 3.2e-12 74.7 69 76.8
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 7.1e-12 73.6 66 60.6
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 7.1e-12 73.6 66 60.6
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 7.1e-12 73.6 66 60.6
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 7.1e-12 73.6 66 60.6
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 9.2e-12 73.2 69 59.4
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 9.2e-12 73.2 69 73.9
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 1.2e-11 72.8 65 60.0
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.2e-11 72.8 70 71.4
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 1.6e-11 72.4 64 73.4
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 2.1e-11 72.0 66 59.1
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 2.1e-11 72.0 66 59.1
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 2.1e-11 72.0 66 59.1
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.1e-11 72.0 61 60.7
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.1e-11 72.0 69 73.9
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.1e-11 72.0 69 73.9
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 2.7e-11 71.6 69 68.1
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 2.7e-11 71.6 69 60.9
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.7e-11 71.6 69 71.0
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 2.7e-11 71.6 64 60.9
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 2.7e-11 71.6 65 60.0
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 3.5e-11 71.2 67 61.2
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 3.5e-11 71.2 69 69.6
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 6.0e-11 70.5 65 58.5
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 6.0e-11 70.5 66 72.7
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 6.0e-11 70.5 68 63.2
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 7.8e-11 70.1 64 68.8
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 7.8e-11 70.1 64 64.1
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 7.8e-11 70.1 69 59.4
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 7.8e-11 70.1 69 72.5
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 1.7e-10 68.9 63 57.1
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 1.7e-10 68.9 69 72.5
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 2.3e-10 68.6 63 60.3
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 2.3e-10 68.6 65 55.4
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 3.0e-10 68.2 63 57.1
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 3.0e-10 68.2 63 57.1
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 3.9e-10 67.8 66 69.7
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 3.9e-10 67.8 66 69.7
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 5.1e-10 67.4 66 68.2
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 8.6e-10 66.6 66 68.2
Potri.004G106350 Populus trichocarpa HOM05D002873 ORTHO05D002978 8.6e-10 66.6 59 72.9
MELO3C005501.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.5e-09 65.9 69 71.0
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.5e-09 65.9 64 70.3
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 1.9e-09 65.5 66 68.2
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 1.9e-09 65.5 69 60.9
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.9e-09 65.5 62 61.3
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 2.5e-09 65.1 60 58.3
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 2.5e-09 65.1 67 61.2
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 2.5e-09 65.1 64 60.9
Nitab4.5_0006524g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 3.3e-09 64.7 68 57.4
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 3.3e-09 64.7 64 68.8
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 4.3e-09 64.3 66 66.7
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 4.3e-09 64.3 63 57.1
AT3G02480 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 5.6e-09 63.9 65 53.8
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 5.6e-09 63.9 63 58.7
Hma1.2p1_0588F.1_g184450 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 5.6e-09 63.9 66 66.7
GSVIVG01036482001 Vitis vinifera HOM05D002873 ORTHO05D002978 5.6e-09 63.9 63 66.7
AL8G28870 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 7.3e-09 63.5 66 66.7
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 7.3e-09 63.5 70 54.3
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 7.3e-09 63.5 70 55.7
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 7.3e-09 63.5 70 54.3
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 7.3e-09 63.5 70 54.3
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 7.3e-09 63.5 70 55.7
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 9.5e-09 63.2 65 66.2
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 1.2e-08 62.8 69 68.1
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 1.6e-08 62.4 67 58.2
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 1.6e-08 62.4 64 62.5
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 2.1e-08 62.0 64 50.0
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 2.1e-08 62.0 64 57.8
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.8e-08 61.6 64 64.1
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 2.8e-08 61.6 69 62.3
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 2.8e-08 61.6 64 57.8
Aa31LG5G10000 Aethionema arabicum HOM05D002873 ORTHO05D002978 3.6e-08 61.2 70 51.4
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 3.6e-08 61.2 63 66.7
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 3.6e-08 61.2 64 67.2
Sed0011149 Sechium edule HOM05D002873 ORTHO05D002978 3.6e-08 61.2 69 53.6
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 3.6e-08 61.2 64 59.4
CARHR266960 Cardamine hirsuta HOM05D002873 ORTHO05D002978 4.7e-08 60.8 66 65.2
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 4.7e-08 60.8 65 64.6
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 8.1e-08 60.1 64 53.1
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 1.1e-07 59.7 60 68.3
CARHR076460 Cardamine hirsuta HOM05D002873 ORTHO05D002978 1.8e-07 58.9 70 51.4
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 1.8e-07 58.9 66 62.1
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 1.8e-07 58.9 69 63.8
Phvul.008G022400 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 2.4e-07 58.5 73 52.1
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 2.4e-07 58.5 65 52.3
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 2.4e-07 58.5 65 63.1
Ca_06720_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 4.0e-07 57.8 67 68.7
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 4.0e-07 57.8 64 64.1
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 4.0e-07 57.8 64 54.7
Nitab4.5_0012845g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 4.0e-07 57.8 64 64.1
Sed0007664 Sechium edule HOM05D002873 ORTHO05D002978 4.0e-07 57.8 69 68.1
Ca_20747_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 5.2e-07 57.4 62 67.7
Medtr7g020780 Medicago truncatula HOM05D002873 ORTHO05D002978 5.2e-07 57.4 65 52.3
Potri.004G107600 Populus trichocarpa HOM05D002873 ORTHO05D002978 5.2e-07 57.4 69 63.8
Potri.017G108500 Populus trichocarpa HOM05D002873 ORTHO05D002978 5.2e-07 57.4 93 49.5
Sp6g15890 Schrenkiella parvula HOM05D002873 ORTHO05D002978 5.2e-07 57.4 61 67.2
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.2e-06 56.2 67 52.2
Duzib268G0192 Durio zibethinus HOM05D002873 ORTHO05D002978 1.2e-06 56.2 69 63.8
Gohir.A11G167800 Gossypium hirsutum HOM05D042116 ORTHO05D002978 1.2e-06 56.2 65 64.6
Psat3g191840 Pisum sativum HOM05D002873 ORTHO05D002978 2.0e-06 55.5 60 51.7
Atru.chr10.1869 Acer truncatum HOM05D002873 ORTHO05D002978 2.6e-06 55.1 68 64.7
C09p61100 Brassica napus HOM05D010783 ORTHO05D013000 2.6e-06 55.1 69 47.8
BolC9t58953H Brassica oleracea HOM05D010783 ORTHO05D013000 2.6e-06 55.1 69 47.8
Lsat_1_v5_gn_2_86260 Lactuca sativa HOM05D002873 ORTHO05D002978 4.4e-06 54.3 63 58.7
A10p23100 Brassica napus HOM05D010783 ORTHO05D013000 7.6e-06 53.5 69 46.4
CiPaw.04G005500 Carya illinoinensis HOM05D002873 ORTHO05D002978 7.6e-06 53.5 69 62.3
Duzib133G0796 Durio zibethinus HOM05D020367 ORTHO05D002978 7.6e-06 53.5 65 61.5
Duzib133G0848 Durio zibethinus HOM05D020367 ORTHO05D002978 7.6e-06 53.5 65 61.5
THA.LOC109116670 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 9.9e-06 53.1 38 78.9


User provided reference genes

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