Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 2.4e-78 295.4 152 100.0
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 4.0e-28 128.6 90 66.7
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 4.0e-28 128.6 90 66.7
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 5.2e-28 128.3 90 66.7
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 3.4e-27 125.6 89 66.3
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 9.8e-27 124.0 91 63.7
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 8.3e-26 120.9 89 65.2
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.4e-25 120.2 89 64.0
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.8e-25 119.8 82 69.5
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 2.4e-25 119.4 89 64.0
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.4e-25 119.4 88 63.6
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 4.1e-25 118.6 149 46.3
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 7.0e-25 117.9 120 54.2
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 7.0e-25 117.9 91 58.2
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 1.2e-24 117.1 91 62.6
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 2.0e-24 116.3 114 56.1
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 1.0e-23 114.0 133 46.6
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 1.7e-23 113.2 126 50.0
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 2.9e-23 112.5 89 61.8
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 4.2e-22 108.6 120 47.5
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 4.2e-22 108.6 110 53.6
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 4.2e-22 108.6 89 56.2
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 5.5e-22 108.2 86 60.5
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 9.5e-22 107.5 87 57.5
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 2.8e-21 105.9 88 59.1
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 2.8e-21 105.9 119 47.9
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 3.6e-21 105.5 87 56.3
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 6.1e-21 104.8 85 61.2
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 6.1e-21 104.8 85 61.2
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 6.1e-21 104.8 85 61.2
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 3.0e-20 102.4 91 56.0
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 3.0e-20 102.4 92 56.5
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 4.0e-20 102.1 85 58.8
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 5.2e-20 101.7 122 49.2
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 6.8e-20 101.3 131 46.6
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 6.8e-20 101.3 83 59.0
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 8.8e-20 100.9 85 58.8
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 8.8e-20 100.9 85 58.8
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 1.5e-19 100.1 91 53.8
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 2.0e-19 99.8 134 44.0
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 2.0e-19 99.8 145 44.8
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 3.4e-19 99.0 121 47.1
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 5.7e-19 98.2 115 50.4
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.3e-18 97.1 138 43.5
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.7e-18 96.7 91 53.8
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 2.2e-18 96.3 100 48.0
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 2.2e-18 96.3 87 55.2
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 2.8e-18 95.9 88 58.0
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 2.8e-18 95.9 87 54.0
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 6.3e-18 94.7 117 45.3
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 6.3e-18 94.7 88 52.3
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 6.3e-18 94.7 88 51.1
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 8.3e-18 94.4 90 54.4
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.1e-17 94.0 99 48.5
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 1.8e-17 93.2 115 47.8
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 1.8e-17 93.2 87 51.7
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 1.8e-17 93.2 134 42.5
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.4e-17 92.8 88 51.1
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 7.0e-17 91.3 87 47.1
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 7.0e-17 91.3 88 53.4
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 9.2e-17 90.9 88 50.0
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 9.2e-17 90.9 88 53.4
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 1.2e-16 90.5 98 49.0
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.2e-16 90.5 88 50.0
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.6e-16 90.1 90 47.8
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 2.0e-16 89.7 100 45.0
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 2.0e-16 89.7 126 42.9
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 2.0e-16 89.7 88 52.3
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 3.5e-16 89.0 132 40.9
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 5.9e-16 88.2 85 55.3
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 5.9e-16 88.2 112 44.6
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 5.9e-16 88.2 132 40.9
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 5.9e-16 88.2 90 46.7
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.3e-15 87.0 88 51.1
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 2.9e-15 85.9 91 46.2
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 5.0e-15 85.1 88 48.9
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 6.6e-15 84.7 89 48.3
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 1.5e-14 83.6 89 48.3
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 2.5e-14 82.8 117 41.0
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 2.5e-14 82.8 124 40.3
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 4.3e-14 82.0 117 39.3
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 7.3e-14 81.3 85 48.2
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.2e-13 80.5 91 44.0
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 1.6e-13 80.1 91 46.2
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 1.6e-13 80.1 117 40.2
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 2.1e-13 79.7 85 49.4
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 2.8e-13 79.3 82 53.7
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 6.1e-13 78.2 88 44.3
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 1.0e-12 77.4 138 34.8
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 2.3e-12 76.3 89 47.2
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 2.3e-12 76.3 143 36.4
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 3.0e-12 75.9 85 47.1
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 2.6e-11 72.8 92 38.0
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 3.4e-11 72.4 70 54.3
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.3e-10 70.5 87 44.8
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 2.2e-10 69.7 90 36.7
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 3.7e-10 68.9 83 41.0
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 8.3e-10 67.8 87 39.1
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.8e-09 66.6 118 39.0
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 3.5e-08 62.4 71 45.1
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 1.7e-07 60.1 135 34.8
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 3.0e-07 59.3 55 54.5
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 5.0e-07 58.5 50 62.0
FAN15G0776 Fragaria x ananassa HOM05D004744 ORTHO05D005655 9.5e-06 54.3 36 69.4


User provided reference genes

Program Settings