Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.9e-110 402.5 203 100.0
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 5.1e-71 271.6 206 66.0
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 2.2e-66 256.1 206 64.1
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 8.4e-66 254.2 206 64.1
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 3.0e-63 245.7 199 63.3
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.1e-62 243.8 200 63.5
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 1.2e-61 240.4 206 58.7
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 3.6e-61 238.8 199 63.8
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 4.7e-61 238.4 199 61.8
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 1.4e-60 236.9 199 62.3
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.8e-60 236.5 199 61.8
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 5.2e-60 235.0 206 61.2
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 2.0e-59 233.0 199 63.3
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 2.6e-59 232.6 207 59.4
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 4.4e-59 231.9 207 58.9
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 9.9e-59 230.7 184 64.7
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.9e-58 229.2 203 60.1
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.9e-58 229.2 185 62.2
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 4.9e-58 228.4 181 64.1
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 8.4e-58 227.6 206 61.2
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 8.4e-58 227.6 202 60.9
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 1.9e-57 226.5 199 62.3
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 4.2e-57 225.3 183 62.3
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 7.1e-57 224.6 203 58.1
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 9.3e-57 224.2 175 62.3
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.2e-56 223.8 195 59.0
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 4.6e-56 221.9 193 60.6
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 6.0e-56 221.5 199 56.8
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 6.0e-56 221.5 200 58.5
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 7.8e-56 221.1 199 58.8
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 7.8e-56 221.1 201 58.7
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 1.0e-55 220.7 176 63.6
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 1.3e-55 220.3 198 60.6
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.7e-55 219.9 278 46.4
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 3.0e-55 219.2 185 62.7
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 3.9e-55 218.8 192 60.9
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 1.5e-54 216.9 183 60.7
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 1.9e-54 216.5 194 59.8
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.9e-54 216.5 165 64.2
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 5.6e-54 214.9 177 61.6
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 5.6e-54 214.9 195 58.5
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 9.6e-54 214.2 196 57.7
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 2.8e-53 212.6 162 66.0
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.8e-53 212.6 188 61.7
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 3.6e-53 212.2 173 63.6
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.6e-53 212.2 177 61.0
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 4.8e-53 211.8 181 63.5
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 8.1e-53 211.1 196 58.7
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 8.1e-53 211.1 199 57.8
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 1.4e-52 210.3 156 66.0
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.4e-52 210.3 163 63.8
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 1.8e-52 209.9 196 56.6
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 2.4e-52 209.5 199 60.3
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 3.1e-52 209.1 163 65.6
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 4.0e-52 208.8 193 57.5
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 4.0e-52 208.8 213 55.4
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 4.0e-52 208.8 186 61.3
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 6.9e-52 208.0 185 60.5
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 9.0e-52 207.6 192 58.3
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-51 207.2 196 59.2
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-51 207.2 196 59.2
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-51 207.2 196 59.2
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.6e-51 206.1 160 65.0
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 3.4e-51 205.7 166 61.4
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 4.4e-51 205.3 186 59.7
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 5.8e-51 204.9 184 61.4
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 7.6e-51 204.5 192 57.3
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 9.9e-51 204.1 181 60.8
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 9.9e-51 204.1 201 55.2
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.3e-50 203.8 185 56.8
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.3e-50 203.8 187 57.2
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.7e-50 203.4 176 60.2
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 2.2e-50 203.0 191 55.5
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 2.9e-50 202.6 176 58.5
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 3.8e-50 202.2 193 58.0
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 6.4e-50 201.4 184 60.3
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 8.4e-50 201.1 176 58.0
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 1.9e-49 199.9 183 60.7
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 4.2e-49 198.7 183 59.0
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 4.2e-49 198.7 193 54.9
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 4.2e-49 198.7 176 57.4
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 4.2e-49 198.7 184 59.2
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.4e-49 198.4 210 51.4
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 1.2e-48 197.2 192 55.7
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.6e-48 196.8 156 64.1
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 7.9e-48 194.5 170 58.2
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 7.9e-48 194.5 166 60.8
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.0e-47 194.1 198 53.5
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.7e-47 193.4 170 60.6
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.7e-47 193.4 186 54.8
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.9e-46 189.9 144 67.4
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 7.3e-46 188.0 199 53.8
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 7.3e-46 188.0 141 65.2
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 3.4e-43 179.1 171 57.3
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 3.2e-41 172.6 153 57.5
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.6e-40 170.2 190 52.1
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 2.1e-40 169.9 141 59.6
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 2.7e-40 169.5 177 53.1
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 3.5e-40 169.1 194 50.5
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 6.0e-40 168.3 193 51.3
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 3.9e-39 165.6 196 48.5
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 5.1e-39 165.2 199 50.3
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 6.7e-39 164.9 146 60.3
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 8.7e-39 164.5 122 68.0
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 1.5e-38 163.7 197 50.8
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.8e-36 156.8 197 46.7
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 5.3e-36 155.2 141 60.3
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 9.0e-36 154.5 141 60.3
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 1.5e-35 153.7 145 60.0
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 7.1e-33 144.8 127 62.2
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 3.5e-32 142.5 183 49.2
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 3.5e-32 142.5 183 49.2
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 6.0e-32 141.7 120 58.3
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 1.0e-31 141.0 123 61.0
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 7.4e-30 134.8 108 64.8
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 1.6e-29 133.7 159 50.3
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 3.7e-29 132.5 132 54.5
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.8e-28 130.2 107 60.7
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 2.6e-27 126.3 89 69.7
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 4.5e-27 125.6 118 56.8
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 1.9e-25 120.2 189 39.2
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 3.2e-25 119.4 141 50.4
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 1.0e-23 114.4 199 37.2
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.6e-21 107.1 91 59.3
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 5.9e-19 98.6 94 57.4
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 4.2e-17 92.4 73 61.6
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 1.1e-14 84.3 84 54.8
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 2.2e-13 80.1 66 60.6
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 7.7e-11 71.6 96 45.8
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.9e-09 67.0 67 52.2
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 9.4e-09 64.7 141 34.8
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 2.7e-08 63.2 68 51.5
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 6.1e-08 62.0 89 38.2
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.7e-06 55.5 56 51.8


User provided reference genes

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