Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc184.29 Carica papaya HOM05D001555 ORTHO05D018144 9.7e-78 293.5 158 100.0
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 8.3e-13 77.8 42 83.3
Dinv32516 Davidia involucrata HOM05D001555 ORTHO05D001616 1.1e-12 77.4 42 83.3
CSS0021057 Camellia sinensis var. sinensis HOM05D001555 ORTHO05D001616 2.4e-12 76.3 44 75.0
CsaV3_3G008640 Cucumis sativus L. HOM05D001555 ORTHO05D001616 5.4e-12 75.1 44 72.7
vmacro20900 Vaccinium macrocarpon HOM05D001555 ORTHO05D001616 5.4e-12 75.1 42 81.0
Hma1.2p1_0623F.1_g191030 Hydrangea macrophylla HOM05D001555 ORTHO05D001616 1.2e-11 73.9 42 78.6
Hma1.2p1_0623F.1_g191041 Hydrangea macrophylla HOM05D001555 ORTHO05D001616 1.2e-11 73.9 42 78.6
ClCG05G001280 Citrullus lanatus HOM05D001555 ORTHO05D001616 1.6e-11 73.6 44 70.5
Actinidia02821 Actinidia chinensis HOM05D001555 ORTHO05D001616 2.1e-11 73.2 42 78.6
Haze_15556 Corylus avellana HOM05D001555 ORTHO05D001616 2.1e-11 73.2 44 70.5
Lj7C508G10 Lonicera japonica HOM05D001555 ORTHO05D001616 2.1e-11 73.2 42 76.2
Atru.chr5.555 Acer truncatum HOM05D001555 ORTHO05D001616 2.7e-11 72.8 42 81.0
Atru.chr5.572 Acer truncatum HOM05D001555 ORTHO05D018144 2.7e-11 72.8 42 81.0
Rhsim01G0165500 Rhododendron simsii HOM05D001555 ORTHO05D001616 2.7e-11 72.8 38 84.2
Rhsim11G0002600 Rhododendron simsii HOM05D001555 ORTHO05D001616 2.7e-11 72.8 38 84.2
TAR374G0688 Trochodendron aralioides HOM05D001414 ORTHO05D000619 2.7e-11 72.8 46 69.6
Gohir.A11G092000 Gossypium hirsutum HOM05D001555 ORTHO05D001616 3.5e-11 72.4 42 76.2
Gohir.D11G096800 Gossypium hirsutum HOM05D001555 ORTHO05D001616 3.5e-11 72.4 42 76.2
Gorai.007G103100 Gossypium raimondii HOM05D001555 ORTHO05D001616 3.5e-11 72.4 42 76.2
CiPaw.01G066000 Carya illinoinensis HOM05D001555 ORTHO05D001616 4.6e-11 72.0 57 59.6
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 6.0e-11 71.6 52 65.4
Actinidia18538 Actinidia chinensis HOM05D001555 ORTHO05D001616 7.8e-11 71.2 57 59.6
THA.LOC104817039 Tarenaya hassleriana HOM05D001555 ORTHO05D001616 1.3e-10 70.5 42 73.8
Glyma.07G066000 Glycine max HOM05D001555 ORTHO05D001616 1.7e-10 70.1 42 71.4
Glyma.07G066300 Glycine max HOM05D001555 ORTHO05D001616 1.7e-10 70.1 42 71.4
Prupe.2G176400 Prunus persica HOM05D001555 ORTHO05D001616 2.3e-10 69.7 44 65.9
RcHm_v2.0_Chr1g0357581 Rosa chinensis HOM05D001555 ORTHO05D001616 2.3e-10 69.7 44 63.6
MELO3C006084.2 Cucumis melo HOM05D001555 ORTHO05D001616 3.0e-10 69.3 42 71.4
DCAR_025212 Daucus carota HOM05D001555 ORTHO05D001616 3.0e-10 69.3 44 70.5
Hma1.2p1_0627F.1_g191650 Hydrangea macrophylla HOM05D001555 ORTHO05D001616 3.0e-10 69.3 75 46.7
Sed0006634 Sechium edule HOM05D001555 ORTHO05D001616 3.0e-10 69.3 42 71.4
Thecc.01G353200 Theobroma cacao HOM05D001555 ORTHO05D001616 3.0e-10 69.3 42 73.8
TAR375G0826 Trochodendron aralioides HOM05D001555 ORTHO05D001616 3.0e-10 69.3 46 67.4
Thhalv10008178m.g Eutrema salsugineum HOM05D001555 ORTHO05D001616 3.9e-10 68.9 45 73.3
Sopen01g038850 Solanum pennellii HOM05D001555 ORTHO05D001616 5.1e-10 68.6 43 67.4
Glyma.16G032500 Glycine max HOM05D001555 ORTHO05D001616 8.6e-10 67.8 42 69.0
SalBow5G0689 Salvia bowleyana HOM05D001555 ORTHO05D001616 8.6e-10 67.8 43 67.4
SalBow5G2727 Salvia bowleyana HOM05D001555 ORTHO05D001616 8.6e-10 67.8 43 67.4
Sed0005709 Sechium edule HOM05D001555 ORTHO05D001616 8.6e-10 67.8 44 65.9
CAN.G78.123 Capsicum annuum HOM05D001555 ORTHO05D001616 1.1e-09 67.4 42 66.7
FvH4_7g15170 Fragaria vesca HOM05D001555 ORTHO05D001616 1.1e-09 67.4 44 61.4
FAN01G1448 Fragaria x ananassa HOM05D001555 ORTHO05D001616 1.1e-09 67.4 44 61.4
FAN03G1316 Fragaria x ananassa HOM05D001555 ORTHO05D001616 1.1e-09 67.4 44 61.4
FAN06G2376 Fragaria x ananassa HOM05D001555 ORTHO05D001616 1.1e-09 67.4 44 61.4
FAN06G3909 Fragaria x ananassa HOM05D001555 ORTHO05D001616 1.1e-09 67.4 44 61.4
FAN10G0139 Fragaria x ananassa HOM05D001555 ORTHO05D001616 1.1e-09 67.4 44 61.4
FAN10G0166 Fragaria x ananassa HOM05D001555 ORTHO05D001616 1.1e-09 67.4 44 61.4
Gohir.D08G154000 Gossypium hirsutum HOM05D001555 ORTHO05D001616 1.1e-09 67.4 42 69.0
Gorai.004G159900 Gossypium raimondii HOM05D001555 ORTHO05D001616 1.1e-09 67.4 42 69.0
Gohir.A08G132600 Gossypium hirsutum HOM05D001555 ORTHO05D001616 1.5e-09 67.0 42 71.4
MD01G1070200 Malus domestica HOM05D001555 ORTHO05D001616 1.5e-09 67.0 54 51.9
Phvul.010G103400 Phaseolus vulgaris HOM05D001555 ORTHO05D001616 1.5e-09 67.0 42 69.0
Potri.002G163300 Populus trichocarpa HOM05D001555 ORTHO05D001616 1.5e-09 67.0 45 73.3
Potri.014G089600 Populus trichocarpa HOM05D001555 ORTHO05D001616 1.5e-09 67.0 45 73.3
VMungo0331G0560 Vigna mungo HOM05D001555 ORTHO05D001616 1.5e-09 67.0 42 69.0
Ciclev10021379m.g Citrus clementina HOM05D001555 ORTHO05D001616 1.9e-09 66.6 42 73.8
Nn1g01663 Nelumbo nucifera HOM05D001555 ORTHO05D001616 1.9e-09 66.6 42 69.0
MSTRG.20859 Avicennia marina HOM05D001555 ORTHO05D001616 3.3e-09 65.9 40 72.5
GSVIVG01026960001 Vitis vinifera HOM05D001555 ORTHO05D001616 3.3e-09 65.9 43 69.8
arahy.Tifrunner.gnm1.ann1.K2S9LQ Arachis hypogaea HOM05D001555 ORTHO05D001616 4.3e-09 65.5 59 55.9
arahy.Tifrunner.gnm1.ann1.S910NZ Arachis hypogaea HOM05D001555 ORTHO05D001616 4.3e-09 65.5 59 55.9
Peaxi162Scf00585g00033 Petunia axillaris HOM05D001555 ORTHO05D001616 4.3e-09 65.5 42 66.7
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 4.3e-09 65.5 47 61.7
Sp1g00810 Schrenkiella parvula HOM05D001555 ORTHO05D001616 5.6e-09 65.1 46 69.6
QL04p055176 Quercus lobata HOM05D001555 ORTHO05D001616 7.3e-09 64.7 40 70.0
Carub.0001s0074 Capsella rubella HOM05D001555 ORTHO05D001616 9.5e-09 64.3 45 68.9
CARHR000870 Cardamine hirsuta HOM05D001555 ORTHO05D001616 9.5e-09 64.3 43 69.8
Migut.N01464 Erythranthe guttata HOM05D001555 ORTHO05D001616 9.5e-09 64.3 42 64.3
Eucgr.D02322 Eucalyptus grandis HOM05D001555 ORTHO05D001616 9.5e-09 64.3 42 66.7
Lj3g0007583 Lotus japonicus HOM05D001555 ORTHO05D001616 9.5e-09 64.3 43 67.4
Lalb_Chr17g0339101 Lupinus albus HOM05D001555 ORTHO05D001616 9.5e-09 64.3 58 51.7
PSO478G2390 Papaver somniferum HOM05D001555 ORTHO05D001616 9.5e-09 64.3 45 64.4
PSO782G2958 Papaver somniferum HOM05D001555 ORTHO05D001616 9.5e-09 64.3 45 64.4
Peaxi162Scf00020g00138 Petunia axillaris HOM05D001555 ORTHO05D001616 9.5e-09 64.3 42 66.7
SGA_v2.0_scaffold43G16388 Striga asiatica HOM05D001555 ORTHO05D001616 1.2e-08 63.9 41 68.3
Lalb_Chr04g0259281 Lupinus albus HOM05D001555 ORTHO05D001616 1.6e-08 63.5 39 66.7
AL1G10910 Arabidopsis lyrata HOM05D001555 ORTHO05D001616 2.1e-08 63.2 45 66.7
AT1G01500 Arabidopsis thaliana HOM05D001555 ORTHO05D001616 2.1e-08 63.2 45 66.7
MBI04_g15072_MAGBIO Magnolia biondii HOM05D001555 ORTHO05D001616 2.8e-08 62.8 42 61.9
MSTRG.17296 Avicennia marina HOM05D001555 ORTHO05D001616 3.6e-08 62.4 41 73.2
Aa31LG1G10770 Aethionema arabicum HOM05D001555 ORTHO05D001616 6.2e-08 61.6 43 69.8
MD07G1132300 Malus domestica HOM05D001555 ORTHO05D018144 6.2e-08 61.6 42 59.5
Oeu018960.2 Olea europaea HOM05D001555 ORTHO05D018144 6.2e-08 61.6 43 62.8
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 8.1e-08 61.2 42 64.3
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 8.1e-08 61.2 42 64.3
Lsat_1_v5_gn_4_35620 Lactuca sativa HOM05D001555 ORTHO05D001616 8.1e-08 61.2 38 68.4
Medtr8g028630 Medicago truncatula HOM05D001555 ORTHO05D001616 8.1e-08 61.2 42 61.9
Nn6g32428 Nelumbo nucifera HOM05D001555 ORTHO05D001616 8.1e-08 61.2 42 61.9
Nitab4.5_0000690g0020 Nicotiana tabacum HOM05D001555 ORTHO05D001616 8.1e-08 61.2 42 66.7
Oeu054346.1 Olea europaea HOM05D001555 ORTHO05D018144 8.1e-08 61.2 40 67.5
SGA_v2.0_scaffold11G05682 Striga asiatica HOM05D001555 ORTHO05D001616 1.1e-07 60.8 42 59.5
Cpa.g.sc48.150 Carica papaya HOM05D001555 ORTHO05D001616 1.8e-07 60.1 41 70.7
EL10Ac1g00362 Beta vulgaris HOM05D001555 ORTHO05D001616 2.3e-07 59.7 36 66.7
Psat4g156800 Pisum sativum HOM05D001555 ORTHO05D001616 2.3e-07 59.7 39 64.1
TWI14G0643 Tripterygium wilfordii HOM05D001555 ORTHO05D001616 2.3e-07 59.7 38 65.8
Oeu018280.1 Olea europaea HOM05D001555 ORTHO05D018144 4.0e-07 58.9 37 70.3
Hund27247 Selenicereus undatus HOM05D001555 ORTHO05D001616 6.8e-07 58.2 36 66.7
Aqoxy5G04071 Aquilegia oxysepala HOM05D001555 ORTHO05D001616 8.9e-07 57.8 42 57.1
BcaC07g42356 Brassica carinata HOM05D001555 ORTHO05D001616 8.9e-07 57.8 75 49.3
Manes.05G030050 Manihot esculenta HOM05D001555 ORTHO05D001616 1.2e-06 57.4 33 75.8
PGR042G0054 Punica granatum HOM05D001555 ORTHO05D001616 1.2e-06 57.4 39 61.5
Oeu003139.1 Olea europaea HOM05D001555 ORTHO05D018144 2.6e-06 56.2 40 62.5
Solyc10g011980.3 Solanum lycopersicum HOM05D001555 ORTHO05D001616 2.6e-06 56.2 38 60.5
Sopen10g005740 Solanum pennellii HOM05D001555 ORTHO05D001616 2.6e-06 56.2 38 60.5
PGSC0003DMG400019387 Solanum tuberosum HOM05D001555 ORTHO05D001616 2.6e-06 56.2 38 60.5
BraA09t42249Z Brassica rapa HOM05D001555 ORTHO05D001616 3.4e-06 55.8 45 64.4
BcaC07g42424 Brassica carinata HOM05D001555 ORTHO05D001616 4.4e-06 55.5 45 62.2
BolC8t52883H Brassica oleracea HOM05D001555 ORTHO05D001616 4.4e-06 55.5 45 62.2
Sc01g0003250 Simmondsia chinensis HOM05D001555 ORTHO05D001616 5.8e-06 55.1 46 56.5
BcaB03g13588 Brassica carinata HOM05D001555 ORTHO05D001616 9.9e-06 54.3 42 66.7
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 9.9e-06 54.3 42 66.7
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 9.9e-06 54.3 42 66.7


User provided reference genes

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