Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 0.0e+00 1478.0 774 100.0
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 1.2e-200 704.1 743 56.8
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 8.3e-199 698.0 728 56.5
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 2.5e-195 686.4 733 55.5
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.1e-193 681.0 721 56.9
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 2.6e-192 676.4 739 54.1
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 2.2e-183 646.7 704 53.8
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 8.4e-183 644.8 716 53.9
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.9e-182 643.7 716 54.1
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.6e-180 635.2 716 53.1
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 6.6e-180 635.2 734 52.6
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 6.2e-178 628.6 763 51.9
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 1.8e-177 627.1 744 51.7
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 3.4e-176 622.9 751 49.9
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.3e-175 620.9 737 52.6
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.3e-175 620.9 744 50.7
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 4.9e-175 619.0 717 50.3
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 3.2e-174 616.3 717 51.2
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 2.1e-170 603.6 737 50.6
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.1e-169 601.3 731 49.8
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 1.3e-167 594.3 729 48.4
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 2.9e-167 593.2 727 50.2
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.9e-166 590.5 726 50.6
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 3.2e-166 589.7 721 50.2
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 5.5e-166 589.0 749 48.5
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 2.1e-165 587.0 741 49.0
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 8.7e-164 581.6 720 49.4
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 2.1e-162 577.0 771 48.9
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 6.2e-162 575.5 750 49.9
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 4.0e-161 572.8 658 52.4
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.2e-160 571.2 727 49.2
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.1e-158 564.7 747 49.0
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 3.2e-158 563.1 634 52.7
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 1.6e-157 560.8 719 47.0
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.6e-157 559.3 713 49.2
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 3.9e-156 556.2 715 49.1
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 6.7e-156 555.4 738 49.2
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 8.7e-156 555.1 727 48.4
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 1.3e-154 551.2 720 47.2
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.3e-154 551.2 628 52.1
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 4.8e-154 549.3 634 51.9
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 5.3e-153 545.8 742 45.7
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 5.0e-151 539.3 744 46.1
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 3.2e-150 536.6 716 46.2
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 7.2e-150 535.4 716 46.2
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 9.3e-150 535.0 714 46.6
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.6e-149 534.3 648 50.6
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 3.6e-149 533.1 714 47.8
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 6.1e-149 532.3 700 45.4
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.3e-148 531.2 628 50.8
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 1.8e-148 530.8 558 52.7
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 1.8e-148 530.8 592 53.2
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 3.0e-148 530.0 720 46.0
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.5e-147 526.9 729 44.6
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 3.3e-147 526.6 737 46.8
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 3.3e-147 526.6 707 47.7
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 7.4e-147 525.4 749 44.7
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 9.7e-147 525.0 760 43.6
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 2.2e-146 523.9 660 48.8
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 3.7e-146 523.1 713 45.0
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 6.3e-146 522.3 758 44.9
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 2.4e-145 520.4 740 47.0
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 9.1e-145 518.5 708 46.3
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 9.1e-145 518.5 721 45.2
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 1.2e-144 518.1 715 44.8
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 1.5e-144 517.7 758 43.8
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 2.9e-143 513.5 630 47.6
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 3.8e-143 513.1 721 45.4
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 3.8e-143 513.1 625 48.5
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.4e-142 511.1 573 51.1
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 1.4e-142 511.1 643 47.6
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 7.2e-142 508.8 501 54.3
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 9.4e-142 508.4 638 48.1
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-141 508.1 638 48.3
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 2.7e-141 506.9 739 44.1
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 2.7e-141 506.9 765 43.0
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 4.6e-141 506.1 579 49.6
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 8.8e-140 501.9 672 47.0
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 8.8e-140 501.9 655 46.7
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 3.3e-139 500.0 655 46.6
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 4.4e-139 499.6 655 46.6
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 7.4e-139 498.8 666 45.6
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 9.7e-139 498.4 610 51.1
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 2.8e-138 496.9 739 44.0
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 3.1e-137 493.4 717 43.5
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 4.1e-137 493.0 715 44.6
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 2.6e-136 490.3 734 44.8
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 3.4e-136 490.0 717 45.2
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 7.9e-133 478.8 724 42.7
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.1e-131 474.9 725 43.2
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 1.5e-131 474.6 728 42.9
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.1e-129 468.4 685 43.1
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 1.2e-128 464.9 469 53.7
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.6e-128 464.5 655 43.5
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 3.5e-128 463.4 701 43.9
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 7.7e-128 462.2 603 46.4
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 7.7e-128 462.2 603 46.4
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.0e-127 461.8 739 42.9
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 1.3e-127 461.5 543 50.5
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 1.7e-127 461.1 755 40.3
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 1.2e-125 454.9 745 40.4
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 8.0e-125 452.2 455 54.9
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 3.3e-123 446.8 633 45.0
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 5.3e-121 439.5 554 51.3
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 8.5e-119 432.2 623 43.5
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 3.2e-118 430.3 728 41.2
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 5.2e-116 422.9 387 58.9
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 4.8e-114 416.4 761 39.7
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 1.4e-113 414.8 642 41.6
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.2e-112 411.8 446 52.0
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 2.9e-111 407.1 734 39.4
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 3.2e-110 403.7 670 44.0
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 4.7e-109 399.8 748 40.6
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 5.7e-107 392.9 657 40.6
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.1e-102 378.6 343 60.3
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.0e-95 355.5 643 40.4
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.3e-95 354.4 642 40.0
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 3.1e-92 344.0 292 61.0
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.8e-92 342.8 564 39.9
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 9.8e-91 339.0 516 40.3
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 2.2e-90 337.8 564 39.4
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 3.7e-90 337.0 458 45.4
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.5e-88 330.5 537 40.0
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 5.6e-86 323.2 492 46.3
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 2.0e-83 314.7 537 38.4
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 9.2e-81 305.8 395 49.1
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.4e-75 287.3 510 37.8
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.4e-75 287.3 510 37.8
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.5e-67 261.9 224 60.7
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 2.9e-66 257.7 587 33.4
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 4.2e-65 253.8 527 36.8
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 8.7e-63 246.1 753 31.3
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 8.7e-63 246.1 487 35.9
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 3.3e-62 244.2 636 30.5
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 4.0e-60 237.3 345 45.5
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 5.8e-59 233.4 301 46.2
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 9.9e-51 206.1 195 56.9
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.7e-42 178.7 257 45.1
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 3.8e-42 177.6 414 34.3
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 6.5e-42 176.8 381 35.7
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.0e-39 169.5 232 47.0
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.5e-38 165.6 295 42.0
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 3.3e-38 164.5 235 44.3
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 6.3e-37 160.2 123 61.8
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 4.1e-36 157.5 231 42.0
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 5.3e-36 157.1 160 55.6
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.5e-35 155.6 296 39.5
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 5.0e-26 124.0 187 40.6
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 8.5e-26 123.2 82 69.5
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 4.2e-25 120.9 126 51.6
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 8.2e-21 106.7 183 39.3
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.0e-18 99.8 75 68.0
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.0e-18 97.4 284 38.0
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 1.4e-17 95.9 179 38.5
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 9.7e-14 83.2 115 44.3
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 2.8e-13 81.6 67 59.7
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 4.8e-13 80.9 65 63.1
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 6.3e-13 80.5 60 61.7
MCO15G512 Micromonas commoda HOM05D003594 ORTHO05D004268 1.8e-12 79.0 556 22.3
MSTRG.26055 Avicennia marina HOM05D003594 ORTHO05D004268 5.3e-12 77.4 151 36.4
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.7e-10 72.4 202 34.2
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 7.2e-09 67.0 55 50.9
Haze_02504 Corylus avellana HOM05D003594 ORTHO05D026973 1.6e-08 65.9 96 47.9
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 4.7e-08 64.3 273 31.9
QL04p046243 Quercus lobata HOM05D003594 ORTHO05D026973 6.1e-08 63.9 95 47.4
Psat0s3125g0040 Pisum sativum HOM05D003335 ORTHO05D003853 2.3e-07 62.0 45 62.2
MSTRG.18917 Avicennia marina HOM05D003594 ORTHO05D026973 5.2e-07 60.8 96 43.8
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 1.2e-06 59.7 192 29.2


User provided reference genes

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