Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 1.7e-221 772.3 387 100.0
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 5.9e-129 464.9 304 76.0
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 2.9e-128 462.6 285 78.6
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 3.8e-128 462.2 288 78.5
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 2.5e-127 459.5 313 75.1
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 9.5e-127 457.6 271 81.9
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.2e-126 457.2 291 77.3
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.6e-126 456.8 330 70.9
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 2.1e-126 456.4 320 72.2
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 4.7e-126 455.3 278 80.2
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 6.1e-126 454.9 316 72.8
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 6.1e-126 454.9 275 81.1
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 6.1e-126 454.9 291 76.6
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 8.0e-126 454.5 275 80.7
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 1.8e-125 453.4 304 75.0
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 1.8e-125 453.4 283 78.4
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 2.3e-125 453.0 291 76.3
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 3.0e-125 452.6 298 75.8
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 6.8e-125 451.4 283 77.7
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 6.8e-125 451.4 291 76.3
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 1.5e-124 450.3 304 74.7
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 1.5e-124 450.3 274 78.8
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 2.0e-124 449.9 307 73.6
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 2.0e-124 449.9 333 69.4
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.0e-124 449.9 275 79.6
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 2.0e-124 449.9 307 73.6
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 3.4e-124 449.1 294 73.8
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 3.4e-124 449.1 302 74.5
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 4.4e-124 448.7 291 77.7
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 4.4e-124 448.7 291 77.7
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 5.8e-124 448.4 329 70.8
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 5.8e-124 448.4 332 68.1
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 7.5e-124 448.0 289 76.8
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 1.3e-123 447.2 304 74.3
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 1.7e-123 446.8 331 69.2
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.9e-123 446.0 274 78.5
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.9e-123 446.0 291 75.6
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 2.9e-123 446.0 308 71.8
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 3.7e-123 445.7 328 70.4
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 3.7e-123 445.7 311 71.7
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 4.9e-123 445.3 276 79.3
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 4.9e-123 445.3 295 74.9
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 4.9e-123 445.3 289 75.1
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 6.4e-123 444.9 269 78.4
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 8.3e-123 444.5 314 72.6
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 1.1e-122 444.1 289 74.7
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 1.4e-122 443.7 269 79.6
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.9e-122 443.4 305 72.5
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 1.9e-122 443.4 328 68.9
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 1.9e-122 443.4 269 79.2
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 2.4e-122 443.0 289 76.1
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.2e-122 442.6 321 70.7
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 3.2e-122 442.6 287 77.0
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 3.2e-122 442.6 308 73.4
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 5.4e-122 441.8 289 76.5
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 5.4e-122 441.8 259 81.9
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 9.2e-122 441.0 301 74.4
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 1.2e-121 440.7 290 76.6
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 1.2e-121 440.7 312 71.5
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 1.6e-121 440.3 328 70.1
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 1.6e-121 440.3 276 76.8
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 2.0e-121 439.9 331 67.4
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 2.0e-121 439.9 293 74.4
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 3.5e-121 439.1 288 76.7
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 6.0e-121 438.3 285 74.0
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 6.0e-121 438.3 293 75.8
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 6.0e-121 438.3 290 76.2
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.3e-120 437.2 294 72.4
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 1.3e-120 437.2 305 70.2
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 2.3e-120 436.4 285 74.4
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 6.6e-120 434.9 298 72.5
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.6e-120 434.5 291 73.5
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.9e-119 433.3 283 74.2
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.5e-119 433.0 283 74.9
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 3.3e-119 432.6 291 73.9
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.3e-119 432.6 291 73.5
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 4.3e-119 432.2 313 69.0
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 4.3e-119 432.2 311 68.8
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 9.5e-119 431.0 275 76.0
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 9.5e-119 431.0 262 80.2
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 4.7e-118 428.7 312 69.6
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 1.1e-117 427.6 312 69.2
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 1.1e-117 427.6 326 66.0
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 1.4e-117 427.2 328 66.5
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.8e-117 426.8 283 73.5
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.8e-117 426.8 274 76.6
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.1e-117 426.0 285 72.6
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 4.0e-117 425.6 285 75.8
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.9e-117 424.5 274 76.3
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.6e-116 422.9 296 70.9
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 3.4e-116 422.5 293 70.6
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 4.4e-116 422.2 284 74.6
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 5.8e-116 421.8 293 73.0
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.3e-115 420.6 325 65.8
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 1.7e-115 420.2 293 70.6
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 4.9e-115 418.7 274 76.3
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 6.4e-115 418.3 261 77.4
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 6.4e-115 418.3 298 68.1
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.4e-114 417.2 253 81.0
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 2.4e-114 416.4 276 73.6
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 3.2e-114 416.0 276 71.4
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 5.4e-114 415.2 282 72.0
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 5.4e-114 415.2 282 72.0
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 9.2e-114 414.5 318 66.7
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 2.1e-113 413.3 284 74.6
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 2.7e-113 412.9 289 73.0
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.7e-113 412.9 296 68.9
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.7e-113 412.9 268 73.9
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 3.5e-113 412.5 323 66.3
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.7e-112 410.2 284 70.8
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 6.6e-112 408.3 259 75.7
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 8.6e-112 407.9 316 64.6
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.9e-111 406.8 287 69.3
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 2.5e-111 406.4 261 76.2
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 2.5e-111 406.4 259 74.9
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 2.5e-111 406.4 255 77.3
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.1e-109 401.0 261 73.6
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 1.4e-109 400.6 295 67.8
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 4.0e-109 399.1 252 79.0
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 4.0e-109 399.1 291 66.7
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 5.2e-109 398.7 277 69.3
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 2.6e-108 396.4 289 70.9
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 3.4e-108 396.0 259 73.7
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 8.3e-107 391.3 293 64.8
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 1.1e-106 391.0 294 67.3
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 4.1e-106 389.0 279 67.7
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.1e-105 386.7 268 69.0
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 2.7e-105 386.3 282 67.0
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 1.0e-104 384.4 350 56.6
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 2.3e-104 383.3 288 64.9
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 3.3e-103 379.4 304 62.2
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 9.5e-103 377.9 303 64.0
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 6.2e-102 375.2 273 69.6
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 4.4e-100 369.0 282 67.0
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 6.4e-99 365.2 298 64.1
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 3.2e-98 362.8 245 73.9
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 4.0e-93 345.9 276 59.1
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 6.0e-89 332.0 221 75.1
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 2.6e-84 316.6 278 56.5
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 9.9e-84 314.7 231 69.3
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 3.8e-83 312.8 300 53.7
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 3.2e-82 309.7 270 58.1
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 1.1e-77 294.7 173 83.2
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 6.9e-77 292.0 186 77.4
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 3.5e-73 279.6 276 54.3
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 1.0e-72 278.1 253 51.4
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 2.8e-70 270.0 268 53.4
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.4e-69 266.9 239 62.8
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 3.1e-69 266.5 273 49.8
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 6.3e-62 242.3 220 62.3
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 4.2e-58 229.6 166 73.5
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 5.5e-58 229.2 295 48.8
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 6.1e-57 225.7 205 61.5
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 2.8e-54 216.9 161 62.1
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 2.5e-50 203.8 175 61.7
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.0e-47 194.1 299 42.1
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.2e-43 180.6 110 77.3
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.0e-39 167.5 187 48.7
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.3e-27 128.3 89 70.8
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 6.5e-27 125.9 76 76.3
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.9e-26 124.4 75 80.0
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 7.2e-26 122.5 286 28.7
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.6e-25 121.3 125 51.2
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 4.7e-25 119.8 80 75.0
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 1.5e-23 114.8 158 45.6
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 1.7e-22 111.3 64 78.1
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.9e-19 100.5 160 40.0
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 3.3e-18 97.1 66 77.3
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.3e-14 85.1 83 50.6
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 4.3e-10 70.1 179 30.2
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.2e-09 68.6 81 48.1
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 4.9e-06 56.6 57 52.6


User provided reference genes

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