Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc180.21 Carica papaya HOM05D000272 ORTHO05D000164 9.2e-91 337.0 190 100.0
Ciclev10019130m.g Citrus clementina HOM05D000272 ORTHO05D000164 1.6e-47 193.4 199 60.8
Duzib084G0181 Durio zibethinus HOM05D000272 ORTHO05D000164 2.8e-47 192.6 196 61.7
Potri.001G100800 Populus trichocarpa HOM05D000272 ORTHO05D000164 3.6e-47 192.2 198 64.1
Potri.003G131300 Populus trichocarpa HOM05D000272 ORTHO05D000164 1.4e-46 190.3 198 59.1
Thecc.03G284000 Theobroma cacao HOM05D000272 ORTHO05D000164 1.4e-46 190.3 195 60.0
Duzib205G0394 Durio zibethinus HOM05D000272 ORTHO05D000164 5.3e-46 188.3 196 59.2
Sabra01G0075700 Salix brachista HOM05D000272 ORTHO05D000164 5.3e-46 188.3 198 60.6
Manes.01G058700 Manihot esculenta HOM05D000272 ORTHO05D000164 1.2e-45 187.2 196 58.7
Duzib068G0644 Durio zibethinus HOM05D000272 ORTHO05D000164 2.0e-45 186.4 196 60.2
Gohir.D12G232600 Gossypium hirsutum HOM05D000272 ORTHO05D000164 1.4e-43 180.3 207 65.7
Gorai.004G139300 Gossypium raimondii HOM05D000272 ORTHO05D000164 1.9e-43 179.9 206 53.4
Gorai.008G248900 Gossypium raimondii HOM05D000272 ORTHO05D000164 1.9e-43 179.9 208 65.4
Manes.02G018700 Manihot esculenta HOM05D000272 ORTHO05D000164 2.4e-43 179.5 198 57.1
Gohir.A03G020200 Gossypium hirsutum HOM05D000272 ORTHO05D000164 3.2e-43 179.1 198 59.6
Gohir.D08G136100 Gossypium hirsutum HOM05D000272 ORTHO05D000164 5.5e-43 178.3 206 52.9
Gohir.A12G234500 Gossypium hirsutum HOM05D000272 ORTHO05D000164 7.1e-43 177.9 206 64.6
Gohir.D03G148500 Gossypium hirsutum HOM05D000272 ORTHO05D000164 1.2e-42 177.2 198 59.1
Gorai.003G156000 Gossypium raimondii HOM05D000272 ORTHO05D000164 1.2e-42 177.2 198 59.1
Dinv38913 Davidia involucrata HOM05D000272 ORTHO05D000164 8.7e-41 171.0 209 52.2
Prupe.5G104600 Prunus persica HOM05D000272 ORTHO05D000164 1.1e-40 170.6 212 55.2
CiPaw.12G090400 Carya illinoinensis HOM05D000272 ORTHO05D000164 9.6e-40 167.5 206 55.8
CiPaw.11G132000 Carya illinoinensis HOM05D000272 ORTHO05D000164 1.3e-39 167.2 203 55.2
vmacro11397 Vaccinium macrocarpon HOM05D000272 ORTHO05D000164 2.1e-39 166.4 214 51.4
RcHm_v2.0_Chr7g0196921 Rosa chinensis HOM05D000272 ORTHO05D000164 2.8e-39 166.0 210 56.2
Haze_08821 Corylus avellana HOM05D000272 ORTHO05D000164 3.7e-39 165.6 209 54.5
Gohir.A08G115500 Gossypium hirsutum HOM05D000272 ORTHO05D000164 4.8e-39 165.2 206 50.5
Cfa012196 Carpinus fangiana HOM05D000272 ORTHO05D000164 6.2e-39 164.9 207 57.5
CSS0025373 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 8.1e-39 164.5 220 52.3
Sabra03G0093500 Salix brachista HOM05D000272 ORTHO05D000164 1.1e-38 164.1 197 56.9
Dinv37612 Davidia involucrata HOM05D000272 ORTHO05D000164 1.4e-38 163.7 203 51.7
PGR031G2387 Punica granatum HOM05D000272 ORTHO05D000164 1.8e-38 163.3 208 51.9
Rhsim02G0234600 Rhododendron simsii HOM05D000272 ORTHO05D000164 1.2e-37 160.6 211 54.5
FvH4_5g02960 Fragaria vesca HOM05D000272 ORTHO05D000164 2.0e-37 159.8 204 52.5
FAN18G3703 Fragaria x ananassa HOM05D000272 ORTHO05D000164 2.0e-37 159.8 204 52.5
MD06G1088700 Malus domestica HOM05D000272 ORTHO05D000164 2.6e-37 159.5 208 53.4
Atru.chr9.2144 Acer truncatum HOM05D000272 ORTHO05D000164 4.5e-37 158.7 217 55.3
FAN13G1684 Fragaria x ananassa HOM05D000272 ORTHO05D000164 7.6e-37 157.9 204 52.9
FAN08G3001 Fragaria x ananassa HOM05D000272 ORTHO05D000164 1.0e-36 157.5 206 51.9
TAR629G1753 Trochodendron aralioides HOM05D000272 ORTHO05D000164 1.3e-36 157.1 210 52.9
FAN04G2733 Fragaria x ananassa HOM05D000272 ORTHO05D000164 3.8e-36 155.6 206 51.9
Lj2A181T46 Lonicera japonica HOM05D000272 ORTHO05D000164 4.9e-36 155.2 197 52.3
TAR636G0981 Trochodendron aralioides HOM05D000272 ORTHO05D000164 8.4e-36 154.5 205 50.2
Eucgr.D01826 Eucalyptus grandis HOM05D000272 ORTHO05D000164 1.4e-35 153.7 216 50.0
MD14G1109800 Malus domestica HOM05D000272 ORTHO05D000164 1.4e-35 153.7 209 52.2
LjContig00312_ERROPOS870357g0021416 Lotus japonicus HOM05D000272 ORTHO05D000164 2.5e-35 152.9 204 52.5
QL12p032253 Quercus lobata HOM05D000272 ORTHO05D000164 2.5e-35 152.9 211 51.7
Peaxi162Scf00074g01922 Petunia axillaris HOM05D000272 ORTHO05D000164 3.2e-35 152.5 207 52.2
Sed0010193 Sechium edule HOM05D000272 ORTHO05D000164 2.7e-34 149.4 215 49.8
CSS0025445 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 1.8e-33 146.7 191 56.5
MSTRG.25629 Avicennia marina HOM05D000272 ORTHO05D000164 6.7e-33 144.8 205 47.3
Aqoxy5G04079 Aquilegia oxysepala HOM05D000272 ORTHO05D000164 2.5e-32 142.9 196 49.0
Lalb_Chr16g0390231 Lupinus albus HOM05D000272 ORTHO05D000164 3.3e-32 142.5 196 50.5
TWI81G0072 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 7.4e-32 141.4 206 50.0
DCAR_008361 Daucus carota HOM05D000272 ORTHO05D000164 1.6e-31 140.2 205 47.3
Nn6g33323 Nelumbo nucifera HOM05D000272 ORTHO05D000164 2.8e-31 139.4 216 49.1
VMungo1215G3258 Vigna mungo HOM05D000272 ORTHO05D000164 3.7e-31 139.0 199 49.2
TAR374G1628 Trochodendron aralioides HOM05D000272 ORTHO05D000164 8.2e-31 137.9 203 45.3
CsaV3_5G002560 Cucumis sativus L. HOM05D000272 ORTHO05D000164 1.4e-30 137.1 230 43.5
Nitab4.5_0002282g0030 Nicotiana tabacum HOM05D000272 ORTHO05D000164 1.8e-30 136.7 209 49.3
Nitab4.5_0006540g0040 Nicotiana tabacum HOM05D000272 ORTHO05D000164 1.2e-29 134.0 208 47.6
Phvul.002G159000 Phaseolus vulgaris HOM05D000272 ORTHO05D000164 1.2e-29 134.0 199 49.7
Glyma.01G221500 Glycine max HOM05D000272 ORTHO05D000164 2.0e-29 133.3 159 56.0
TWI60G1542 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 3.4e-29 132.5 157 56.1
Glyma.11G022200 Glycine max HOM05D000272 ORTHO05D000164 1.3e-28 130.6 160 56.2
Hund11447 Selenicereus undatus HOM05D000272 ORTHO05D000164 1.7e-28 130.2 215 47.4
SalBow8G3177 Salvia bowleyana HOM05D000272 ORTHO05D000164 2.9e-28 129.4 156 55.1
arahy.Tifrunner.gnm1.ann1.J72J6Q Arachis hypogaea HOM05D000272 ORTHO05D000164 5.0e-28 128.6 160 53.8
CAN.G532.14 Capsicum annuum HOM05D000272 ORTHO05D000164 1.4e-27 127.1 208 45.7
Lj4g0017369 Lotus japonicus HOM05D000272 ORTHO05D000164 2.5e-27 126.3 165 50.3
SalBow8G1745 Salvia bowleyana HOM05D000272 ORTHO05D000164 2.5e-27 126.3 158 53.8
VMungo0251G0710 Vigna mungo HOM05D000272 ORTHO05D000164 3.2e-27 125.9 194 46.4
Glyma.08G016900 Glycine max HOM05D000272 ORTHO05D000164 1.6e-26 123.6 150 53.3
Lalb_Chr09g0320881 Lupinus albus HOM05D000272 ORTHO05D000164 1.6e-26 123.6 225 43.1
unitig_46.g18545 Utricularia gibba HOM05D000272 ORTHO05D000164 3.5e-26 122.5 200 42.5
MSTRG.13856 Avicennia marina HOM05D000272 ORTHO05D000164 4.6e-26 122.1 207 42.0
Sc22g0005400 Simmondsia chinensis HOM05D000272 ORTHO05D000164 4.6e-26 122.1 215 46.0
HanXRQChr13g0394741 Helianthus annuus HOM05D000272 ORTHO05D000164 6.1e-26 121.7 164 53.7
Phvul.002G292000 Phaseolus vulgaris HOM05D000272 ORTHO05D000164 6.1e-26 121.7 195 44.1
unitig_37.g12241 Utricularia gibba HOM05D000272 ORTHO05D000164 6.1e-26 121.7 200 44.0
Medtr8g098815 Medicago truncatula HOM05D000272 ORTHO05D000164 1.3e-25 120.6 168 48.8
Lalb_Chr05g0224591 Lupinus albus HOM05D000272 ORTHO05D000164 3.9e-25 119.0 194 46.4
arahy.Tifrunner.gnm1.ann1.RDQ7NL Arachis hypogaea HOM05D000272 ORTHO05D000164 5.1e-25 118.6 170 47.6
Oeu039156.1 Olea europaea HOM05D000272 ORTHO05D000164 5.1e-25 118.6 193 49.2
EL10Ac5g12812 Beta vulgaris HOM05D000272 ORTHO05D000164 1.5e-24 117.1 228 43.4
PSO170G1489 Papaver somniferum HOM05D000272 ORTHO05D000164 1.9e-24 116.7 215 42.3
Lsat_1_v5_gn_6_4901 Lactuca sativa HOM05D000272 ORTHO05D000164 2.5e-24 116.3 177 48.6
Glyma.05G210300 Glycine max HOM05D000272 ORTHO05D000164 7.4e-24 114.8 189 45.0
CANSAT21G1257 Cannabis sativa HOM05D000272 ORTHO05D000164 9.7e-24 114.4 239 41.4
AUR62019727 Chenopodium quinoa HOM05D000272 ORTHO05D000164 2.8e-23 112.8 219 44.7
ClCG01G002450 Citrullus lanatus HOM05D000272 ORTHO05D000164 6.3e-23 111.7 178 41.6
Sopen08g029720 Solanum pennellii HOM05D000272 ORTHO05D000164 6.3e-23 111.7 200 43.5
Aa31LG9G540 Aethionema arabicum HOM05D000272 ORTHO05D000164 1.1e-22 110.9 163 48.5
GSVIVG01019399001 Vitis vinifera HOM05D000272 ORTHO05D000164 1.8e-22 110.2 113 60.2
PSO063G2877 Papaver somniferum HOM05D000272 ORTHO05D000164 2.4e-22 109.8 217 41.5
HPP92_025627 Vanilla planifolia HOM05D000272 ORTHO05D000164 2.4e-22 109.8 154 46.8
Ah.07g196530 Amaranthus hybridus HOM05D000272 ORTHO05D000164 5.3e-22 108.6 196 43.9
PGSC0003DMG400012329 Solanum tuberosum HOM05D000272 ORTHO05D000164 1.2e-21 107.5 197 44.2
Solyc08g081400.4 Solanum lycopersicum HOM05D000272 ORTHO05D000164 1.5e-21 107.1 203 42.9
Lsat_1_v5_gn_3_6961 Lactuca sativa HOM05D000272 ORTHO05D000164 7.7e-21 104.8 193 43.5
ECA233G5462 Erigeron canadensis HOM05D000272 ORTHO05D000164 2.2e-20 103.2 206 42.2
Psat7g031320 Pisum sativum HOM05D000272 ORTHO05D000164 3.8e-20 102.4 167 46.7
Sed0018584 Sechium edule HOM05D000272 ORTHO05D000164 5.0e-20 102.1 224 39.7
THA.LOC104817855 Tarenaya hassleriana HOM05D000272 ORTHO05D000164 5.0e-20 102.1 199 44.2
SGA_v2.0_scaffold173G39152 Striga asiatica HOM05D000272 ORTHO05D000164 1.1e-19 100.9 194 43.3
Ca_10941_v3 Cicer arietinum L. HOM05D000272 ORTHO05D000164 1.4e-19 100.5 160 46.2
Lalb_Chr05g0211721 Lupinus albus HOM05D000272 ORTHO05D000164 1.2e-18 97.4 228 39.9
ECA246G0001 Erigeron canadensis HOM05D000272 ORTHO05D000164 1.6e-18 97.1 206 50.0
Carub.0007s3407 Capsella rubella HOM05D000272 ORTHO05D000164 4.6e-18 95.5 166 42.8
AL7G48000 Arabidopsis lyrata HOM05D000272 ORTHO05D000164 5.1e-17 92.0 160 43.8
AT5G41410 Arabidopsis thaliana HOM05D000272 ORTHO05D000164 5.1e-17 92.0 160 43.8
Oeu031428.1 Olea europaea HOM05D000272 ORTHO05D000164 8.8e-17 91.3 115 53.9
Hma1.2p1_0216F.1_g090910 Hydrangea macrophylla HOM05D000272 ORTHO05D000164 1.1e-16 90.9 62 75.8
THA.LOC104823595 Tarenaya hassleriana HOM05D000272 ORTHO05D000164 1.5e-16 90.5 169 46.7
CARHR212910 Cardamine hirsuta HOM05D000272 ORTHO05D000164 2.0e-16 90.1 161 42.2
Migut.A00750 Erythranthe guttata HOM05D000272 ORTHO05D000164 2.5e-16 89.7 205 41.5
MSTRG.1850 Avicennia marina HOM05D000272 ORTHO05D000164 4.3e-16 89.0 210 34.8
Thhalv10027690m.g Eutrema salsugineum HOM05D000272 ORTHO05D000164 9.7e-16 87.8 153 44.4
SHI07121 Sapria himalayana HOM05D000272 ORTHO05D000164 4.8e-15 85.5 200 40.0
Sp7g00540 Schrenkiella parvula HOM05D000272 ORTHO05D000164 8.2e-15 84.7 158 40.5
SpUn0010_0010 Schrenkiella parvula HOM05D000272 ORTHO05D000164 8.2e-15 84.7 158 40.5
arahy.Tifrunner.gnm1.ann1.A5442N Arachis hypogaea HOM05D000272 ORTHO05D000164 1.4e-14 84.0 165 42.4
HanXRQChr06g0165981 Helianthus annuus HOM05D000272 ORTHO05D000164 1.8e-14 83.6 194 37.6
arahy.Tifrunner.gnm1.ann1.RFW3PD Arachis hypogaea HOM05D000272 ORTHO05D000164 2.4e-14 83.2 164 42.7
Actinidia14585 Actinidia chinensis HOM05D003450 ORTHO05D004150 3.4e-13 79.3 154 41.6
AUR62010720 Chenopodium quinoa HOM05D000272 ORTHO05D000164 3.4e-13 79.3 113 54.9
BcaB06g27622 Brassica carinata HOM05D000272 ORTHO05D000164 2.2e-12 76.6 161 40.4
BcaC02g08959 Brassica carinata HOM05D000272 ORTHO05D000164 8.5e-12 74.7 161 40.4
BcaB02g07893 Brassica carinata HOM05D000272 ORTHO05D000164 1.4e-11 73.9 158 40.5
A04p14540 Brassica napus HOM05D000272 ORTHO05D000164 1.4e-11 73.9 158 39.2
BraA04t17099Z Brassica rapa HOM05D000272 ORTHO05D000164 1.4e-11 73.9 158 39.2
C04p48450 Brassica napus HOM05D000272 ORTHO05D000164 4.2e-11 72.4 161 39.8
BolC4t26437H Brassica oleracea HOM05D000272 ORTHO05D000164 4.2e-11 72.4 161 39.8
Oeu059563.1 Olea europaea HOM05D000272 ORTHO05D000164 3.6e-10 69.3 112 42.9
BcaC08g44530 Brassica carinata HOM05D000272 ORTHO05D000164 5.1e-09 65.5 160 36.9
Actinidia28360 Actinidia chinensis HOM05D000272 ORTHO05D000164 6.7e-09 65.1 109 42.2
SGA_v2.0_scaffold521G52693 Striga asiatica HOM05D000272 ORTHO05D000164 9.7e-08 61.2 76 53.9
arahy.Tifrunner.gnm1.ann1.PZI7WX Arachis hypogaea HOM05D000263 ORTHO05D009363 7.0e-06 55.1 70 61.4


User provided reference genes

Program Settings