Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.4e-114 416.4 216 100.0
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 4.1e-47 192.2 216 53.7
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 3.0e-45 186.0 226 50.9
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 6.6e-45 184.9 220 51.4
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 2.5e-44 183.0 206 51.5
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 4.7e-43 178.7 217 50.2
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 6.9e-42 174.9 228 51.8
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.2e-41 174.1 194 54.1
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.0e-41 173.3 228 51.3
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.7e-40 170.2 198 52.5
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.2e-40 169.9 213 52.6
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 3.2e-39 166.0 208 50.5
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 7.8e-38 161.4 170 53.5
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 7.8e-38 161.4 181 53.0
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.0e-37 161.0 234 47.4
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.3e-37 160.6 176 53.4
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 2.3e-37 159.8 177 53.7
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 3.9e-37 159.1 208 47.6
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 6.6e-37 158.3 216 48.1
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 3.3e-36 156.0 225 44.9
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 1.6e-35 153.7 210 46.7
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 6.2e-35 151.8 171 53.8
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.1e-34 151.0 209 48.8
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 4.0e-34 149.1 170 51.8
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 5.3e-34 148.7 170 50.0
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.2e-33 147.5 214 46.3
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 1.2e-33 147.5 206 48.5
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 1.5e-33 147.1 210 45.7
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.6e-33 146.4 231 43.7
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 4.5e-33 145.6 183 51.4
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 9.9e-33 144.4 215 46.0
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 1.3e-32 144.1 208 45.2
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 2.2e-32 143.3 168 47.0
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 2.9e-32 142.9 226 44.2
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 2.4e-31 139.8 208 45.7
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 3.2e-31 139.4 196 44.9
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 3.2e-31 139.4 173 49.1
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 4.2e-31 139.0 195 45.1
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 7.1e-31 138.3 170 48.2
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 9.3e-31 137.9 206 43.7
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 9.3e-31 137.9 188 47.9
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 1.2e-30 137.5 186 45.2
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 2.1e-30 136.7 170 47.6
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 3.5e-30 136.0 210 44.3
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 7.9e-30 134.8 182 43.4
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 7.9e-30 134.8 208 43.8
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 1.0e-29 134.4 211 42.2
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.8e-29 133.7 170 46.5
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.3e-29 133.3 209 42.1
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.0e-29 132.9 211 42.7
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 5.1e-29 132.1 184 44.6
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 8.7e-29 131.3 199 42.2
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.1e-28 131.0 175 46.3
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-28 130.2 206 41.7
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 1.9e-28 130.2 207 39.6
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 2.5e-28 129.8 215 42.3
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.6e-28 128.6 211 41.7
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 7.4e-28 128.3 207 41.5
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 7.4e-28 128.3 195 42.6
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 1.3e-27 127.5 191 42.9
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 1.3e-27 127.5 185 43.2
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 1.6e-27 127.1 180 43.9
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 2.8e-27 126.3 174 46.0
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 4.8e-27 125.6 208 42.3
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 4.8e-27 125.6 170 44.7
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 6.2e-27 125.2 212 38.7
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 6.2e-27 125.2 212 38.7
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 1.1e-26 124.4 196 41.8
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 1.1e-26 124.4 170 44.1
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 1.4e-26 124.0 189 42.9
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 1.8e-26 123.6 171 45.6
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 1.8e-26 123.6 211 41.2
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 1.8e-26 123.6 177 41.8
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 1.8e-26 123.6 169 44.4
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.4e-26 123.2 211 41.2
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 3.1e-26 122.9 161 46.0
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 3.1e-26 122.9 190 40.5
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 3.1e-26 122.9 159 45.3
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 4.0e-26 122.5 171 45.0
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 4.0e-26 122.5 175 44.6
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 5.3e-26 122.1 210 43.3
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.2e-25 120.9 191 44.5
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 1.2e-25 120.9 211 38.9
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.5e-25 120.6 193 42.0
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 2.6e-25 119.8 212 39.2
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 3.4e-25 119.4 196 39.8
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 5.8e-25 118.6 208 41.3
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 9.9e-25 117.9 212 42.9
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 4.9e-24 115.5 188 38.3
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 4.9e-24 115.5 192 41.7
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.4e-24 114.8 219 39.7
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 8.4e-24 114.8 162 44.4
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 1.1e-23 114.4 210 38.1
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 1.1e-23 114.4 211 41.7
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.4e-23 114.0 218 40.4
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 3.2e-23 112.8 219 39.7
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 9.3e-23 111.3 211 37.9
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 9.3e-23 111.3 225 37.3
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 9.3e-23 111.3 168 43.5
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 1.6e-22 110.5 160 42.5
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.6e-22 110.5 213 38.0
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 2.7e-22 109.8 207 41.1
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 4.6e-22 109.0 208 40.4
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 4.6e-22 109.0 174 37.9
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 6.0e-22 108.6 206 38.3
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 1.0e-21 107.8 181 41.4
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 1.3e-21 107.5 191 37.7
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 1.8e-21 107.1 154 42.2
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 6.7e-21 105.1 210 36.7
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.5e-20 104.0 161 42.2
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.9e-20 103.6 191 37.7
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.9e-20 103.6 191 37.7
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.3e-19 100.9 159 40.3
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 2.1e-19 100.1 211 35.5
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 8.1e-19 98.2 189 37.0
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 1.4e-18 97.4 162 37.7
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.4e-15 87.4 227 33.5
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 4.2e-15 85.9 173 35.8
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 9.3e-15 84.7 161 37.3
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 1.6e-14 84.0 224 33.0
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.1e-14 83.6 113 46.9
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-14 83.2 109 47.7
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 6.0e-14 82.0 84 54.8
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 1.0e-13 81.3 122 43.4
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-13 81.3 159 37.7
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 5.1e-13 79.0 182 32.4
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-12 77.0 159 36.5
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.3e-12 75.9 219 34.2
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.3e-12 75.9 219 34.2
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 1.6e-11 73.9 181 30.9
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 3.7e-11 72.8 70 55.7
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 4.8e-11 72.4 84 46.4
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 1.4e-10 70.9 140 36.4
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 1.8e-10 70.5 118 40.7
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.0e-09 67.0 126 36.5
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 1.3e-08 64.3 124 37.1
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 1.3e-08 64.3 178 29.8
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 8.5e-08 61.6 120 35.0
CSS0041755 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.6e-06 56.2 43 67.4


User provided reference genes

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