Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 1.3e-35 152.5 78 100.0
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 1.2e-23 112.8 76 77.6
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 2.0e-23 112.1 79 73.4
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 1.7e-22 109.0 76 78.9
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 1.7e-22 109.0 77 76.6
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 2.8e-22 108.2 72 77.8
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 2.8e-22 108.2 80 72.5
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 3.7e-22 107.8 77 74.0
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 3.7e-22 107.8 64 82.8
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 4.9e-22 107.5 77 74.0
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 6.3e-22 107.1 75 74.7
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.3e-22 107.1 75 74.7
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.3e-22 107.1 75 74.7
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.3e-22 107.1 75 74.7
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 6.3e-22 107.1 66 84.8
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 8.3e-22 106.7 74 71.6
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 8.3e-22 106.7 75 72.0
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 1.4e-21 105.9 59 86.4
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 1.8e-21 105.5 64 81.2
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 2.4e-21 105.1 72 75.0
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 3.1e-21 104.8 75 72.0
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 4.1e-21 104.4 69 79.7
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 9.1e-21 103.2 75 73.3
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.1e-21 103.2 75 72.0
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 9.1e-21 103.2 75 72.0
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 9.1e-21 103.2 75 72.0
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.2e-20 102.8 74 68.9
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.2e-20 102.8 74 70.3
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.0e-20 102.1 71 70.4
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 2.0e-20 102.1 72 69.4
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 2.0e-20 102.1 59 84.7
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 2.7e-20 101.7 72 69.4
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 3.5e-20 101.3 75 69.3
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 3.5e-20 101.3 57 84.2
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 4.5e-20 100.9 68 79.4
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 4.5e-20 100.9 59 86.4
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 5.9e-20 100.5 59 79.7
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 5.9e-20 100.5 64 76.6
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 7.7e-20 100.1 76 72.4
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 7.7e-20 100.1 77 70.1
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 1.3e-19 99.4 57 86.0
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 1.3e-19 99.4 75 69.3
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 1.7e-19 99.0 72 69.4
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 2.3e-19 98.6 78 69.2
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 2.3e-19 98.6 68 77.9
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 3.8e-19 97.8 77 64.9
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 5.0e-19 97.4 72 70.8
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 5.0e-19 97.4 75 68.0
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 6.6e-19 97.1 76 64.5
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 6.6e-19 97.1 59 78.0
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 6.6e-19 97.1 72 69.4
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 1.5e-18 95.9 72 66.7
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 2.5e-18 95.1 58 77.6
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 3.3e-18 94.7 72 66.7
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 4.2e-18 94.4 68 67.6
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 5.5e-18 94.0 58 75.9
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 5.5e-18 94.0 62 71.0
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 5.5e-18 94.0 66 69.7
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 7.2e-18 93.6 58 77.6
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 1.2e-17 92.8 77 64.9
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 1.2e-17 92.8 69 68.1
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 1.6e-17 92.4 72 63.9
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.1e-17 92.0 64 67.2
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 2.1e-17 92.0 58 75.9
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 2.1e-17 92.0 75 64.0
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 3.6e-17 91.3 64 70.3
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 6.1e-17 90.5 58 75.9
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 8.0e-17 90.1 73 63.0
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 8.0e-17 90.1 62 69.4
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 1.4e-16 89.4 73 61.6
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.8e-16 89.0 111 50.5
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 1.8e-16 89.0 68 66.2
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 3.0e-16 88.2 57 73.7
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 3.0e-16 88.2 59 71.2
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 3.0e-16 88.2 59 71.2
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 3.0e-16 88.2 59 71.2
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 3.0e-16 88.2 59 71.2
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 4.0e-16 87.8 81 59.3
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 5.2e-16 87.4 77 63.6
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.2e-15 86.3 70 64.3
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.0e-15 85.5 105 52.4
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 4.4e-15 84.3 62 64.5
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 9.8e-15 83.2 59 67.8
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 9.8e-15 83.2 76 55.3
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 1.3e-14 82.8 79 54.4
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 8.3e-14 80.1 42 90.5
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 1.4e-13 79.3 43 83.7
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 4.1e-13 77.8 75 57.3
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 7.0e-13 77.0 127 42.5
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.6e-12 75.9 42 88.1
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.3e-11 72.8 49 71.4
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 5.0e-11 70.9 75 54.7
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-10 69.7 41 80.5
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 1.1e-10 69.7 47 68.1


User provided reference genes

Program Settings