Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc18.187 Carica papaya HOM05D004825 ORTHO05D005415 6.3e-109 397.5 211 100.0
Cfa006284 Carpinus fangiana HOM05D004825 ORTHO05D005415 5.1e-26 122.1 181 49.2
THA.LOC104814783 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 2.6e-25 119.8 171 49.1
Haze_04525 Corylus avellana HOM05D004825 ORTHO05D005415 4.4e-25 119.0 181 48.1
CiPaw.07G074800 Carya illinoinensis HOM05D004825 ORTHO05D005415 2.2e-24 116.7 182 45.1
CsaV3_2G010380 Cucumis sativus L. HOM05D004825 ORTHO05D005415 2.2e-24 116.7 185 44.3
Dinv09864 Davidia involucrata HOM05D004825 ORTHO05D005415 2.8e-24 116.3 185 47.6
FAN05G3281 Fragaria x ananassa HOM05D004825 ORTHO05D005415 4.8e-24 115.5 181 49.2
FAN14G5305 Fragaria x ananassa HOM05D004825 ORTHO05D005415 4.8e-24 115.5 181 49.7
MD12G1258300 Malus domestica HOM05D004825 ORTHO05D005415 3.1e-23 112.8 177 48.6
Manes.09G184100 Manihot esculenta HOM05D004825 ORTHO05D005415 7.0e-23 111.7 177 44.1
Manes.09G172300 Manihot esculenta HOM05D004825 ORTHO05D005415 1.2e-22 110.9 206 40.8
MELO3C008585.2 Cucumis melo HOM05D004825 ORTHO05D005415 2.0e-22 110.2 185 43.2
Eucgr.B01387 Eucalyptus grandis HOM05D004825 ORTHO05D005415 5.9e-22 108.6 178 48.9
RcHm_v2.0_Chr3g0448251 Rosa chinensis HOM05D004825 ORTHO05D005415 7.7e-22 108.2 182 47.8
FAN09G1822 Fragaria x ananassa HOM05D004825 ORTHO05D005415 2.9e-21 106.3 186 47.8
ClCG11G007440 Citrullus lanatus HOM05D004825 ORTHO05D005415 1.9e-20 103.6 187 42.2
Sabra13G0069900 Salix brachista HOM05D004825 ORTHO05D005415 1.9e-20 103.6 172 39.0
TAR374G0592 Trochodendron aralioides HOM05D004825 ORTHO05D005415 2.5e-20 103.2 180 43.3
Ah.06g195620 Amaranthus hybridus HOM05D004825 ORTHO05D005415 3.2e-20 102.8 170 44.7
Hma1.2p1_0220F.1_g093020 Hydrangea macrophylla HOM05D004825 ORTHO05D005415 7.2e-20 101.7 184 42.9
Prupe.6G359000 Prunus persica HOM05D004825 ORTHO05D005415 1.6e-19 100.5 180 45.6
EL10Ac4g09418 Beta vulgaris HOM05D004825 ORTHO05D005415 2.1e-19 100.1 174 43.7
Carub.0005s1010 Capsella rubella HOM05D004825 ORTHO05D005415 2.1e-19 100.1 170 46.5
Atru.chr12.2135 Acer truncatum HOM05D004825 ORTHO05D005415 4.7e-19 99.0 170 42.9
GSVIVG01019145001 Vitis vinifera HOM05D004825 ORTHO05D005415 4.7e-19 99.0 186 42.5
AUR62006702 Chenopodium quinoa HOM05D004825 ORTHO05D005415 1.4e-18 97.4 176 42.0
TWI59G0982 Tripterygium wilfordii HOM05D004825 ORTHO05D005415 1.8e-18 97.1 174 44.8
Cc09_g03390 Coffea canephora HOM05D004825 ORTHO05D005415 3.0e-18 96.3 175 41.7
Sed0020944 Sechium edule HOM05D004825 ORTHO05D005415 6.7e-18 95.1 184 39.7
DCAR_003341 Daucus carota HOM05D004825 ORTHO05D005415 1.5e-17 94.0 62 71.0
FAN02G3908 Fragaria x ananassa HOM05D004825 ORTHO05D005415 1.5e-17 94.0 67 67.2
Potri.013G087950 Populus trichocarpa HOM05D004825 ORTHO05D005415 1.5e-17 94.0 172 40.7
QL02p047782 Quercus lobata HOM05D004825 ORTHO05D005415 3.3e-17 92.8 60 76.7
PGSC0003DMG402000916 Solanum tuberosum HOM05D004825 ORTHO05D005415 3.3e-17 92.8 129 48.1
CANSAT54G0263 Cannabis sativa HOM05D004825 ORTHO05D005415 5.7e-17 92.0 149 44.3
PGR119G2407 Punica granatum HOM05D004825 ORTHO05D005415 7.5e-17 91.7 154 40.3
Aqoxy1G01799 Aquilegia oxysepala HOM05D004825 ORTHO05D005415 1.3e-16 90.9 174 39.1
Sopen11g007800 Solanum pennellii HOM05D004825 ORTHO05D005415 1.3e-16 90.9 64 68.8
Sp5g16820 Schrenkiella parvula HOM05D004825 ORTHO05D005415 2.2e-16 90.1 170 40.6
Sc06g0005090 Simmondsia chinensis HOM05D004825 ORTHO05D005415 2.8e-16 89.7 171 40.4
Solyc11g018720.1 Solanum lycopersicum HOM05D004825 ORTHO05D005415 2.8e-16 89.7 131 44.3
Sopen11g009760 Solanum pennellii HOM05D004825 ORTHO05D005415 2.8e-16 89.7 131 44.3
arahy.Tifrunner.gnm1.ann1.T0KW2L Arachis hypogaea HOM05D004825 ORTHO05D005415 3.7e-16 89.4 174 41.4
THA.LOC104805710 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 3.7e-16 89.4 87 54.0
CAN.G1086.4 Capsicum annuum HOM05D004825 ORTHO05D005415 4.8e-16 89.0 64 67.2
Ciclev10007912m.g Citrus clementina HOM05D004825 ORTHO05D005415 6.3e-16 88.6 171 39.2
Nitab4.5_0000167g0010 Nicotiana tabacum HOM05D004825 ORTHO05D005415 6.3e-16 88.6 179 42.5
Hund07323 Selenicereus undatus HOM05D004825 ORTHO05D005415 8.2e-16 88.2 118 46.6
Actinidia06813 Actinidia chinensis HOM05D004825 ORTHO05D005415 1.4e-15 87.4 172 39.5
arahy.Tifrunner.gnm1.ann1.B3BVJM Arachis hypogaea HOM05D004825 ORTHO05D005415 1.8e-15 87.0 174 40.8
Duzib128G0048 Durio zibethinus HOM05D004825 ORTHO05D005415 1.8e-15 87.0 173 39.3
BcaB01g01166 Brassica carinata HOM05D004825 ORTHO05D005415 2.4e-15 86.7 171 41.5
Nitab4.5_0004158g0060 Nicotiana tabacum HOM05D004825 ORTHO05D005415 2.4e-15 86.7 169 40.8
Phvul.008G056000 Phaseolus vulgaris HOM05D004825 ORTHO05D005415 3.1e-15 86.3 180 40.6
Thecc.05G205800 Theobroma cacao HOM05D004825 ORTHO05D005415 3.1e-15 86.3 171 41.5
TPR.G29414 Trifolium pratense HOM05D004825 ORTHO05D005415 5.3e-15 85.5 172 37.8
A02p13010 Brassica napus HOM05D004825 ORTHO05D005415 7.0e-15 85.1 59 66.1
BolC2t08253H Brassica oleracea HOM05D004825 ORTHO05D005415 7.0e-15 85.1 60 65.0
BraA02t06357Z Brassica rapa HOM05D004825 ORTHO05D005415 7.0e-15 85.1 59 66.1
AL5G22530 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 1.2e-14 84.3 170 41.8
COL.COLO4_07809 Corchorus olitorius HOM05D004825 ORTHO05D005415 1.2e-14 84.3 62 67.7
Nn3g16227 Nelumbo nucifera HOM05D004825 ORTHO05D005415 1.2e-14 84.3 162 37.7
BcaC03g14673 Brassica carinata HOM05D004825 ORTHO05D005415 1.6e-14 84.0 67 62.7
CARHR104500 Cardamine hirsuta HOM05D004825 ORTHO05D005415 1.6e-14 84.0 172 41.9
AUR62000357 Chenopodium quinoa HOM05D004825 ORTHO05D005415 1.6e-14 84.0 77 54.5
MD12G1258500 Malus domestica HOM05D004825 ORTHO05D005415 1.6e-14 84.0 72 58.3
Aa31LG2G2270 Aethionema arabicum HOM05D004825 ORTHO05D005415 2.0e-14 83.6 60 65.0
MSTRG.10886 Avicennia marina HOM05D004825 ORTHO05D005415 2.6e-14 83.2 123 42.3
BcaB05g24081 Brassica carinata HOM05D004825 ORTHO05D005415 2.6e-14 83.2 60 63.3
Gohir.A09G053832 Gossypium hirsutum HOM05D004825 ORTHO05D005415 2.6e-14 83.2 60 61.7
Gohir.D09G053068 Gossypium hirsutum HOM05D004825 ORTHO05D005415 2.6e-14 83.2 60 61.7
Gorai.006G054700 Gossypium raimondii HOM05D004825 ORTHO05D005415 2.6e-14 83.2 60 61.7
PSO478G4613 Papaver somniferum HOM05D004825 ORTHO05D005415 2.6e-14 83.2 177 38.4
VMungo1383G1726 Vigna mungo HOM05D004825 ORTHO05D005415 2.6e-14 83.2 173 39.9
Carub.0002s1042 Capsella rubella HOM05D004825 ORTHO05D005415 4.5e-14 82.4 60 63.3
AT1G65080 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 5.9e-14 82.0 60 63.3
C02p21130 Brassica napus HOM05D004825 ORTHO05D005415 5.9e-14 82.0 57 66.7
Thhalv10010266m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 1.0e-13 81.3 170 40.0
Glyma.18G240200 Glycine max HOM05D004825 ORTHO05D005415 1.3e-13 80.9 183 38.8
HanXRQChr01g0025761 Helianthus annuus HOM05D004825 ORTHO05D005415 1.7e-13 80.5 186 39.2
PGR119G0192 Punica granatum HOM05D004825 ORTHO05D005415 1.7e-13 80.5 181 39.8
AL2G19720 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 2.9e-13 79.7 161 37.3
PSO017G3896 Papaver somniferum HOM05D004825 ORTHO05D005415 2.9e-13 79.7 169 37.3
SGA_v2.0_scaffold122G33281 Striga asiatica HOM05D004825 ORTHO05D005415 2.9e-13 79.7 59 59.3
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 8.5e-13 78.2 109 43.1
ATR0582G066 Amborella trichopoda HOM05D004825 ORTHO05D005415 1.1e-12 77.8 74 54.1
Thhalv10022463m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 1.1e-12 77.8 167 40.1
Migut.I01185 Erythranthe guttata HOM05D004825 ORTHO05D005415 1.9e-12 77.0 60 56.7
MBI11_g43072_MAGBIO Magnolia biondii HOM05D004825 ORTHO05D005415 4.2e-12 75.9 188 35.6
RcHm_v2.0_Chr3g0448211 Rosa chinensis HOM05D004825 ORTHO05D005415 4.2e-12 75.9 161 37.9
SalBow6G0845 Salvia bowleyana HOM05D004825 ORTHO05D005415 7.2e-12 75.1 59 59.3
Lsat_1_v5_gn_8_2080 Lactuca sativa HOM05D004825 ORTHO05D005415 9.4e-12 74.7 175 38.3
Lj1g0016449 Lotus japonicus HOM05D004825 ORTHO05D005415 1.2e-11 74.3 175 36.6
Medtr7g079500 Medicago truncatula HOM05D004825 ORTHO05D005415 1.2e-11 74.3 172 38.4
A06p22020 Brassica napus HOM05D004825 ORTHO05D005415 2.7e-11 73.2 170 39.4
Ca_07962_v3 Cicer arietinum L. HOM05D004825 ORTHO05D005415 4.7e-11 72.4 179 38.0
BraA06t25290Z Brassica rapa HOM05D004825 ORTHO05D005415 1.0e-10 71.2 170 38.8
BcaC01g02045 Brassica carinata HOM05D004825 ORTHO05D005415 2.3e-10 70.1 51 68.6
C03p69210 Brassica napus HOM05D004825 ORTHO05D005415 2.3e-10 70.1 51 68.6
BolC3t19174H Brassica oleracea HOM05D004825 ORTHO05D005415 2.3e-10 70.1 51 68.6
AT3G44370 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 3.0e-10 69.7 180 37.2
DCAR_026472 Daucus carota HOM05D004825 ORTHO05D005415 1.2e-09 67.8 58 55.2
Os06g0171600 Oryza sativa ssp. japonica HOM05D004825 ORTHO05D005415 1.2e-09 67.8 90 43.3
CDE02G0647 Ceratophyllum demersum HOM05D004825 ORTHO05D005415 2.0e-09 67.0 191 34.0
HPP92_007971 Vanilla planifolia HOM05D004825 ORTHO05D005415 2.0e-09 67.0 55 52.7
ECA233G4148 Erigeron canadensis HOM05D004825 ORTHO05D005415 1.3e-08 64.3 83 42.2
Zm00001eb375410 Zea mays HOM05D004825 ORTHO05D005415 2.2e-08 63.5 56 53.6
Lalb_Chr19g0126781 Lupinus albus HOM05D004825 ORTHO05D005415 1.1e-07 61.2 180 33.9
Sp5g19610 Schrenkiella parvula HOM05D004825 ORTHO05D005415 1.1e-07 61.2 58 51.7
SpUn0108_0010 Schrenkiella parvula HOM05D004825 ORTHO05D005415 1.1e-07 61.2 58 51.7
AagrBONN_evm.TU.Sc2ySwM_340.165 Anthoceros agrestis HOM05D004825 ORTHO05D005415 2.4e-07 60.1 59 47.5
Lj2A408T57 Lonicera japonica HOM05D004825 ORTHO05D005415 9.1e-07 58.2 125 38.4


User provided reference genes

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