Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 3.9e-188 661.4 351 100.0
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 2.1e-109 399.8 645 40.3
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 8.1e-101 371.3 646 38.5
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.0e-100 367.9 646 38.2
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.7e-98 363.6 646 37.9
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.8e-98 362.5 646 37.8
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 1.4e-97 360.5 640 38.1
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.1e-94 350.9 643 37.3
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 7.3e-94 348.2 643 37.2
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 1.6e-93 347.1 647 37.1
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.6e-93 345.9 642 37.2
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 2.4e-92 343.2 647 36.8
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 5.3e-92 342.0 657 40.2
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 1.3e-90 337.4 648 36.7
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.2e-90 336.7 650 35.5
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 4.9e-90 335.5 648 36.6
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 6.4e-90 335.1 650 35.8
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 6.4e-90 335.1 600 37.8
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 8.4e-90 334.7 652 36.7
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.4e-89 334.0 647 37.1
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 7.1e-89 331.6 650 35.7
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 4.6e-88 328.9 643 35.5
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 7.4e-86 321.6 639 35.7
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 1.1e-84 317.8 645 36.0
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-84 317.8 645 36.0
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-84 317.8 645 35.8
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.4e-84 317.4 645 37.1
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.8e-84 317.0 604 36.3
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.3e-84 315.5 644 34.6
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.6e-83 313.2 655 34.0
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.6e-83 313.2 645 35.8
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 7.6e-83 311.6 651 35.0
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 2.9e-82 309.7 650 36.6
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.4e-81 307.4 645 35.3
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 7.1e-81 305.1 641 34.9
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 2.5e-78 296.6 646 37.6
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 4.3e-78 295.8 545 36.9
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.6e-77 293.9 654 33.3
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.8e-77 292.4 557 35.2
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 6.2e-77 292.0 651 34.3
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 6.2e-77 292.0 651 34.3
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 6.2e-77 292.0 651 34.3
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 1.4e-76 290.8 647 34.3
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.8e-76 290.4 658 34.3
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 3.1e-76 289.7 647 34.2
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 5.3e-76 288.9 646 34.4
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.2e-75 287.7 653 34.3
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.2e-75 287.7 648 33.3
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 2.0e-75 287.0 652 34.2
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 2.0e-75 287.0 642 32.2
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 4.5e-75 285.8 645 32.7
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.2e-74 283.5 642 32.1
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 5.0e-74 282.3 610 32.5
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 8.4e-74 281.6 602 34.1
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 8.4e-74 281.6 648 32.9
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 7.1e-73 278.5 660 35.6
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.1e-72 276.9 178 71.9
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 3.5e-72 276.2 651 33.6
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.0e-71 274.6 548 33.2
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 1.0e-71 274.6 607 32.1
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 2.3e-71 273.5 175 72.6
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 6.7e-71 271.9 551 33.2
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.5e-70 270.8 178 72.5
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.5e-70 270.8 178 72.5
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.9e-70 270.4 177 71.2
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 3.7e-69 266.2 565 33.5
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 1.1e-68 264.6 178 69.1
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.8e-68 263.8 176 68.2
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 2.4e-68 263.5 178 68.5
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.2e-67 261.2 659 33.8
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.2e-67 261.2 659 33.8
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 7.7e-67 258.5 612 32.4
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.0e-66 258.1 567 32.3
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.7e-66 257.3 651 31.8
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.7e-66 257.3 651 31.8
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.2e-65 252.7 667 31.2
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 5.5e-65 252.3 632 32.3
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.6e-64 250.8 176 69.3
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.7e-64 250.0 176 69.3
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 3.6e-64 249.6 617 30.8
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 6.1e-64 248.8 631 30.9
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 1.0e-63 248.1 182 68.7
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.0e-63 248.1 182 68.7
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.8e-63 247.3 574 31.7
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 2.3e-63 246.9 184 67.4
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 3.0e-63 246.5 176 65.3
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 3.0e-63 246.5 179 65.4
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 5.1e-63 245.7 599 31.6
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 1.5e-62 244.2 182 63.7
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 4.3e-62 242.7 179 67.0
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 7.4e-62 241.9 546 31.7
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 4.8e-61 239.2 639 30.8
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 8.2e-61 238.4 188 65.4
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.1e-60 238.0 177 63.8
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 1.8e-60 237.3 639 30.7
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 1.8e-60 237.3 639 30.7
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 2.4e-60 236.9 619 30.5
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 9.1e-60 235.0 176 61.4
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.5e-59 234.2 591 30.1
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 4.5e-59 232.6 602 30.6
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 7.7e-59 231.9 176 64.8
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 1.7e-58 230.7 176 63.6
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 1.7e-58 230.7 176 63.6
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 3.8e-58 229.6 169 63.3
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 5.0e-58 229.2 176 62.5
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 3.2e-57 226.5 172 62.8
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 4.2e-57 226.1 601 30.8
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 2.6e-54 216.9 624 29.8
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 4.8e-53 212.6 621 29.8
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.4e-52 211.1 167 61.7
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 3.1e-52 209.9 584 29.5
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 1.2e-51 208.0 157 65.0
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.5e-49 201.1 143 65.0
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 1.9e-49 200.7 659 26.4
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 3.2e-49 199.9 162 60.5
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.4e-47 194.5 161 58.4
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 2.0e-46 190.7 181 48.6
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 3.3e-46 189.9 162 57.4
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.7e-45 187.6 188 48.4
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.1e-44 184.9 427 30.9
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.8e-44 184.1 175 53.1
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 5.9e-43 179.1 569 27.4
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.0e-38 164.1 176 47.7
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 1.3e-37 161.4 123 62.6
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 4.1e-36 156.4 189 46.0
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.6e-35 154.5 491 28.5
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 1.4e-28 131.3 93 69.9
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 9.1e-28 128.6 128 59.4
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.6e-27 127.9 127 58.3
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 2.0e-27 127.5 164 48.8
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 3.8e-26 123.2 133 53.4
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 5.6e-25 119.4 189 37.6
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 7.2e-25 119.0 157 45.2
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 2.8e-24 117.1 182 40.1
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 1.8e-20 104.4 114 54.4
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 9.2e-20 102.1 89 58.4
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 2.0e-19 100.9 89 58.4
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.3e-18 98.2 68 60.3
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 3.9e-18 96.7 178 42.1
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 8.6e-18 95.5 121 42.1
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.9e-17 94.4 90 54.4
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 1.6e-11 74.7 38 86.8
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 6.8e-07 59.3 107 39.3


User provided reference genes

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