Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc18.109 Carica papaya HOM05D004697 ORTHO05D006015 8.9e-122 440.3 220 100.0
TWI18G0273 Tripterygium wilfordii HOM05D004697 ORTHO05D006015 1.2e-73 280.4 166 84.3
MD17G1198700 Malus domestica HOM05D004697 ORTHO05D006015 2.6e-73 279.3 152 88.2
Cfa002045 Carpinus fangiana HOM05D004697 ORTHO05D006015 5.9e-73 278.1 152 90.1
MD09G1216600 Malus domestica HOM05D004697 ORTHO05D006015 2.2e-72 276.2 152 86.8
FAN02G0624 Fragaria x ananassa HOM05D004697 ORTHO05D006015 2.9e-72 275.8 152 88.2
Haze_16466 Corylus avellana HOM05D004697 ORTHO05D006015 5.0e-72 275.0 152 89.5
FAN09G1585 Fragaria x ananassa HOM05D004697 ORTHO05D006015 5.0e-72 275.0 152 86.8
FvH4_6g31270 Fragaria vesca HOM05D004697 ORTHO05D006015 6.5e-72 274.6 152 87.5
Dinv38068 Davidia involucrata HOM05D004697 ORTHO05D006015 8.5e-72 274.2 152 88.2
FAN05G1321 Fragaria x ananassa HOM05D004697 ORTHO05D006015 8.5e-72 274.2 152 87.5
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 8.5e-72 274.2 152 87.5
CiPaw.02G153000 Carya illinoinensis HOM05D004697 ORTHO05D006015 1.9e-71 273.1 151 86.8
Manes.11G050800 Manihot esculenta HOM05D004697 ORTHO05D006015 3.2e-71 272.3 152 87.5
Lsat_1_v5_gn_4_104321 Lactuca sativa HOM05D004697 ORTHO05D006015 5.5e-71 271.6 152 86.8
FAN14G5909 Fragaria x ananassa HOM05D004697 ORTHO05D006015 9.3e-71 270.8 152 86.8
Potri.001G177000 Populus trichocarpa HOM05D004697 ORTHO05D006015 1.6e-70 270.0 152 85.5
Prupe.3G075300 Prunus persica HOM05D004697 ORTHO05D006015 2.7e-70 269.2 152 84.9
TAR625G1470 Trochodendron aralioides HOM05D004697 ORTHO05D006015 2.7e-70 269.2 152 85.5
Sed0000376 Sechium edule HOM05D004697 ORTHO05D006015 3.6e-70 268.9 152 85.5
CSS0027866 Camellia sinensis var. sinensis HOM05D004697 ORTHO05D006015 4.6e-70 268.5 151 86.8
Thecc.06G081300 Theobroma cacao HOM05D004697 ORTHO05D006015 7.9e-70 267.7 152 85.5
Lalb_Chr04g0262581 Lupinus albus HOM05D004697 ORTHO05D006015 1.0e-69 267.3 152 85.5
Ca_20414_v3 Cicer arietinum L. HOM05D004697 ORTHO05D006015 1.3e-69 266.9 152 85.5
RcHm_v2.0_Chr2g0137261 Rosa chinensis HOM05D004697 ORTHO05D006015 1.3e-69 266.9 152 84.9
GSVIVG01017171001 Vitis vinifera HOM05D004697 ORTHO05D006015 1.3e-69 266.9 152 84.9
Oeu021953.1 Olea europaea HOM05D004697 ORTHO05D006015 1.8e-69 266.5 153 85.0
Actinidia08826 Actinidia chinensis HOM05D004697 ORTHO05D006015 3.0e-69 265.8 151 82.1
CsaV3_7G032920 Cucumis sativus L. HOM05D004697 ORTHO05D006015 5.1e-69 265.0 151 84.1
Migut.D01039 Erythranthe guttata HOM05D004697 ORTHO05D006015 5.1e-69 265.0 152 83.6
Hma1.2p1_0682F.1_g202560 Hydrangea macrophylla HOM05D004697 ORTHO05D006015 5.1e-69 265.0 152 84.2
CiPaw.01G241200 Carya illinoinensis HOM05D004697 ORTHO05D006015 8.7e-69 264.2 152 84.2
DCAR_016232 Daucus carota HOM05D004697 ORTHO05D006015 8.7e-69 264.2 152 82.2
Medtr4g011820 Medicago truncatula HOM05D004697 ORTHO05D006015 1.1e-68 263.8 152 82.9
Gohir.D05G127800 Gossypium hirsutum HOM05D004697 ORTHO05D006015 1.5e-68 263.5 152 84.2
ECA232G0480 Erigeron canadensis HOM05D004697 ORTHO05D006015 1.9e-68 263.1 152 83.6
Lj5A64T48 Lonicera japonica HOM05D004697 ORTHO05D006015 2.5e-68 262.7 147 85.7
Lj3g0021181 Lotus japonicus HOM05D004697 ORTHO05D006015 2.5e-68 262.7 151 84.1
Manes.04G120500 Manihot esculenta HOM05D004697 ORTHO05D006015 2.5e-68 262.7 152 84.9
Ciclev10025775m.g Citrus clementina HOM05D004697 ORTHO05D006015 3.3e-68 262.3 152 82.9
Gorai.009G132000 Gossypium raimondii HOM05D004697 ORTHO05D006015 3.3e-68 262.3 152 84.9
TAR626G0416 Trochodendron aralioides HOM05D004697 ORTHO05D006015 3.3e-68 262.3 152 82.9
PGR102G0607 Punica granatum HOM05D004697 ORTHO05D006015 7.4e-68 261.2 152 81.6
Lj9C505T11 Lonicera japonica HOM05D004697 ORTHO05D006015 9.7e-68 260.8 152 82.2
Eucgr.F02571 Eucalyptus grandis HOM05D004697 ORTHO05D006015 1.3e-67 260.4 152 82.2
Gohir.A05G126900 Gossypium hirsutum HOM05D004697 ORTHO05D006015 1.3e-67 260.4 152 83.6
Rhsim12G0195700 Rhododendron simsii HOM05D004697 ORTHO05D006015 1.3e-67 260.4 152 84.2
COL.COLO4_30318 Corchorus olitorius HOM05D004697 ORTHO05D006015 1.6e-67 260.0 152 83.6
CANSAT35G0283 Cannabis sativa HOM05D004697 ORTHO05D006015 2.2e-67 259.6 152 81.6
Psat7g253520 Pisum sativum HOM05D004697 ORTHO05D006015 2.8e-67 259.2 151 81.5
Lalb_Chr25g0279581 Lupinus albus HOM05D004697 ORTHO05D006015 3.7e-67 258.8 152 82.2
TAR383G0670 Trochodendron aralioides HOM05D004697 ORTHO05D006015 3.7e-67 258.8 153 81.7
Peaxi162Scf00015g00230 Petunia axillaris HOM05D004697 ORTHO05D006015 1.8e-66 256.5 152 82.2
AUR62011602 Chenopodium quinoa HOM05D004697 ORTHO05D006015 2.4e-66 256.1 152 81.6
AUR62016417 Chenopodium quinoa HOM05D004697 ORTHO05D006015 2.4e-66 256.1 152 81.6
Cc04_g03660 Coffea canephora HOM05D004697 ORTHO05D006015 2.4e-66 256.1 152 82.2
HanXRQChr16g0500731 Helianthus annuus HOM05D004697 ORTHO05D006015 2.4e-66 256.1 152 80.9
Glyma.13G361500 Glycine max HOM05D004697 ORTHO05D006015 3.1e-66 255.8 152 82.9
SGA_v2.0_scaffold279G46822 Striga asiatica HOM05D004697 ORTHO05D006015 6.9e-66 254.6 152 81.6
QL05p025707 Quercus lobata HOM05D004697 ORTHO05D006015 1.5e-65 253.4 152 80.3
Solyc03g120450.4 Solanum lycopersicum HOM05D004697 ORTHO05D006015 1.5e-65 253.4 152 80.9
Sopen03g039330 Solanum pennellii HOM05D004697 ORTHO05D006015 1.5e-65 253.4 152 80.9
Duzib235G0952 Durio zibethinus HOM05D004697 ORTHO05D006015 2.6e-65 252.7 180 72.8
Ah.01g021080 Amaranthus hybridus HOM05D004697 ORTHO05D006015 3.4e-65 252.3 152 79.6
Nitab4.5_0002424g0030 Nicotiana tabacum HOM05D004697 ORTHO05D006015 3.4e-65 252.3 152 80.3
SalBow2G0681 Salvia bowleyana HOM05D004697 ORTHO05D006015 3.4e-65 252.3 152 78.9
HPP92_000674 Vanilla planifolia HOM05D004697 ORTHO05D006015 5.9e-65 251.5 151 79.5
Os01g0178000 Oryza sativa ssp. japonica HOM05D004697 ORTHO05D006015 1.0e-64 250.8 151 76.8
arahy.Tifrunner.gnm1.ann1.3I1ZSD Arachis hypogaea HOM05D004697 ORTHO05D006015 1.3e-64 250.4 152 79.6
arahy.Tifrunner.gnm1.ann1.UVA1XC Arachis hypogaea HOM05D004697 ORTHO05D006015 1.3e-64 250.4 152 79.6
Glyma.15G012300 Glycine max HOM05D004697 ORTHO05D006015 1.7e-64 250.0 152 81.6
Nitab4.5_0005784g0020 Nicotiana tabacum HOM05D004697 ORTHO05D006015 1.7e-64 250.0 152 80.3
MSTRG.4725 Avicennia marina HOM05D004697 ORTHO05D006015 2.2e-64 249.6 152 80.9
ClCG09G002390 Citrullus lanatus HOM05D004697 ORTHO05D006015 2.9e-64 249.2 184 68.5
Hund00582 Selenicereus undatus HOM05D004697 ORTHO05D006015 2.9e-64 249.2 152 78.3
MBI04_g11925_MAGBIO Magnolia biondii HOM05D004697 ORTHO05D006015 3.8e-64 248.8 152 79.6
Hund06596 Selenicereus undatus HOM05D004697 ORTHO05D006015 3.8e-64 248.8 154 79.9
vmacro16936 Vaccinium macrocarpon HOM05D004697 ORTHO05D006015 8.5e-64 247.7 161 77.6
Zm00001eb336900 Zea mays HOM05D004697 ORTHO05D006015 2.5e-63 246.1 151 78.1
Aqoxy7G01886 Aquilegia oxysepala HOM05D004697 ORTHO05D006015 3.2e-63 245.7 152 77.6
VMungo1080G0743 Vigna mungo HOM05D004697 ORTHO05D006015 3.2e-63 245.7 152 78.9
Zm00001eb122460 Zea mays HOM05D004697 ORTHO05D006015 5.5e-63 245.0 151 78.1
Aa31LG4G630 Aethionema arabicum HOM05D004697 ORTHO05D006015 7.2e-63 244.6 153 75.8
Phvul.005G173300 Phaseolus vulgaris HOM05D004697 ORTHO05D006015 7.2e-63 244.6 152 78.9
THA.LOC104808212 Tarenaya hassleriana HOM05D004697 ORTHO05D006015 1.6e-62 243.4 152 76.3
PSO782G4365 Papaver somniferum HOM05D004697 ORTHO05D006015 4.6e-62 241.9 152 77.0
PSO063G6298 Papaver somniferum HOM05D004697 ORTHO05D006015 1.0e-61 240.7 152 76.3
Thhalv10018674m.g Eutrema salsugineum HOM05D004697 ORTHO05D006015 1.4e-61 240.4 152 75.0
Sp5g35450 Schrenkiella parvula HOM05D004697 ORTHO05D006015 1.4e-61 240.4 152 73.7
ATR0071G006 Amborella trichopoda HOM05D004697 ORTHO05D006015 3.9e-61 238.8 151 76.2
AT1G80360 Arabidopsis thaliana HOM05D004697 ORTHO05D006015 3.9e-61 238.8 152 75.0
BcaC08g45305 Brassica carinata HOM05D004697 ORTHO05D006015 3.9e-61 238.8 152 75.7
C06p29100 Brassica napus HOM05D004697 ORTHO05D006015 3.9e-61 238.8 152 75.7
BolC6t38073H Brassica oleracea HOM05D004697 ORTHO05D006015 3.9e-61 238.8 152 75.7
Actinidia16015 Actinidia chinensis HOM05D004697 ORTHO05D006015 1.1e-60 237.3 144 79.9
A02p23620 Brassica napus HOM05D004697 ORTHO05D006015 1.5e-60 236.9 152 73.7
BraA02t07355Z Brassica rapa HOM05D004697 ORTHO05D006015 1.5e-60 236.9 152 73.7
CARHR074150 Cardamine hirsuta HOM05D004697 ORTHO05D006015 1.5e-60 236.9 152 75.0
Sabra01G0149200 Salix brachista HOM05D004697 ORTHO05D006015 2.6e-60 236.1 134 82.8
Carub.0002s2721 Capsella rubella HOM05D004697 ORTHO05D006015 3.3e-60 235.7 152 72.4
BcaC03g15980 Brassica carinata HOM05D004697 ORTHO05D006015 4.4e-60 235.3 152 73.0
C02p37380 Brassica napus HOM05D004697 ORTHO05D006015 4.4e-60 235.3 152 73.0
AL2G41140 Arabidopsis lyrata HOM05D004697 ORTHO05D006015 9.7e-60 234.2 152 73.0
A07p26630 Brassica napus HOM05D004697 ORTHO05D006015 9.7e-60 234.2 152 75.0
BraA07t30306Z Brassica rapa HOM05D004697 ORTHO05D006015 9.7e-60 234.2 152 75.0
CDE01G0614 Ceratophyllum demersum HOM05D004697 ORTHO05D006015 1.3e-59 233.8 152 74.3
BolC2t09749H Brassica oleracea HOM05D004697 ORTHO05D006015 2.2e-59 233.0 152 72.4
BcaB05g25274 Brassica carinata HOM05D004697 ORTHO05D006015 2.8e-59 232.6 153 73.2
BcaB02g07280 Brassica carinata HOM05D004697 ORTHO05D006015 3.1e-58 229.2 152 73.0
BcaB02g08691 Brassica carinata HOM05D004697 ORTHO05D006015 6.9e-58 228.0 152 72.4
BcaC08g47581 Brassica carinata HOM05D004697 ORTHO05D006015 9.1e-58 227.6 152 71.7
BolC6t40428H Brassica oleracea HOM05D004697 ORTHO05D006015 9.1e-58 227.6 152 71.7
Nn2g11851 Nelumbo nucifera HOM05D004697 ORTHO05D006015 9.1e-58 227.6 152 75.7
A07p45300 Brassica napus HOM05D004697 ORTHO05D006015 2.6e-57 226.1 151 71.5
BraA07t32034Z Brassica rapa HOM05D004697 ORTHO05D006015 3.4e-57 225.7 152 70.4
Thecc.09G144900 Theobroma cacao HOM05D004697 ORTHO05D006015 1.1e-55 220.7 152 67.8
C06p54160 Brassica napus HOM05D004697 ORTHO05D006015 1.0e-53 214.2 178 61.8
GSVIVG01035717001 Vitis vinifera HOM05D004697 ORTHO05D006015 1.4e-53 213.8 152 67.8
vmacro16938 Vaccinium macrocarpon HOM05D004697 ORTHO05D006015 1.8e-53 213.4 115 87.8
CSS0021419 Camellia sinensis var. sinensis HOM05D004697 ORTHO05D006015 5.2e-53 211.8 152 67.8
Dinv30207 Davidia involucrata HOM05D004697 ORTHO05D006015 8.8e-53 211.1 152 66.4
EL10Ac9g21973 Beta vulgaris HOM05D004697 ORTHO05D006015 2.6e-52 209.5 154 70.8
Sc10g0005480 Simmondsia chinensis HOM05D004697 ORTHO05D006015 9.7e-52 207.6 120 83.3
Pp3c20_8270 Physcomitrium patens HOM05D004697 ORTHO05D006015 1.3e-51 207.2 146 68.5
SMO196G0040 Selaginella moellendorffii HOM05D004697 ORTHO05D006015 4.8e-51 205.3 144 67.4
unitig_62.g23774 Utricularia gibba HOM05D004697 ORTHO05D006015 1.8e-50 203.4 152 64.5
CANSAT25G3819 Cannabis sativa HOM05D004697 ORTHO05D006015 9.1e-50 201.1 145 65.5
Dinv30209 Davidia involucrata HOM05D004697 ORTHO05D006015 1.6e-49 200.3 149 65.8
Mapoly0192s0009 Marchantia polymorpha HOM05D004697 ORTHO05D006015 4.5e-49 198.7 147 65.3
CAN.G438.43 Capsicum annuum HOM05D004697 ORTHO05D006015 4.2e-47 192.2 115 80.0
Rhsim06G0149600 Rhododendron simsii HOM05D004697 ORTHO05D000003 1.4e-45 187.2 134 67.2
vmacro05442 Vaccinium macrocarpon HOM05D004697 ORTHO05D006015 7.0e-42 174.9 115 70.4
Oeu006803.1 Olea europaea HOM05D004697 ORTHO05D006015 1.4e-37 160.6 103 76.7
MELO3C001121.2 Cucumis melo HOM05D004697 ORTHO05D006015 4.2e-31 139.0 74 90.5
arahy.Tifrunner.gnm1.ann1.08G0EU Arachis hypogaea HOM05D004697 ORTHO05D006015 1.8e-26 123.6 84 69.0
MELO3C023373.2 Cucumis melo HOM05D004697 ORTHO05D006015 7.0e-26 121.7 59 96.6
Cre01.g051800 Chlamydomonas reinhardtii HOM05D004697 ORTHO05D006015 2.0e-25 120.2 147 44.9
Sed0004608 Sechium edule HOM05D004697 ORTHO05D006015 2.7e-25 119.8 60 95.0
SHI09701 Sapria himalayana HOM05D000105 ORTHO05D000023 5.2e-21 105.5 88 55.7
VMungo1127G2122 Vigna mungo HOM05D004697 ORTHO05D004810 6.8e-21 105.1 66 77.3
PGSC0003DMG400041984 Solanum tuberosum HOM05D004697 ORTHO05D006015 5.7e-20 102.1 63 71.4
BcaC05g29157 Brassica carinata HOM05D004697 ORTHO05D002680 2.9e-19 99.8 110 50.0
BolC5t34080H Brassica oleracea HOM05D004697 ORTHO05D002680 2.9e-19 99.8 110 50.0
BolC3t14325H Brassica oleracea HOM05D004697 ORTHO05D002680 1.4e-18 97.4 109 51.4
SEGI_40049 Sequoiadendron giganteum HOM05D004697 ORTHO05D006015 1.8e-18 97.1 56 80.4
MBI04_g47371_MAGBIO Magnolia biondii HOM05D004697 ORTHO05D006015 1.1e-15 87.8 72 66.7
C05p54140 Brassica napus HOM05D004697 ORTHO05D002680 1.5e-12 77.4 98 49.0
C02p30770 Brassica napus HOM05D004697 ORTHO05D006015 4.4e-12 75.9 98 45.9
Dinv30538 Davidia involucrata HOM05D004697 ORTHO05D006015 1.3e-11 74.3 35 94.3
TPR.G27507 Trifolium pratense HOM05D004697 ORTHO05D006015 3.9e-08 62.8 39 74.4
CARHR231470 Cardamine hirsuta HOM05D003605 ORTHO05D004292 1.2e-06 57.8 81 32.1
AL4G11730 Arabidopsis lyrata HOM05D003605 ORTHO05D004292 1.6e-06 57.4 118 28.0
Thhalv10000093m.g Eutrema salsugineum HOM05D003605 ORTHO05D004292 1.6e-06 57.4 118 28.0
AT2G22250 Arabidopsis thaliana HOM05D003605 ORTHO05D004292 2.1e-06 57.0 118 28.0
Carub.0004s0139 Capsella rubella HOM05D003605 ORTHO05D004292 2.1e-06 57.0 118 28.0
PRCOL_00005023 Prasinoderma coloniale HOM05D003605 ORTHO05D004292 2.1e-06 57.0 141 27.7
BcaC07g41087 Brassica carinata HOM05D003605 ORTHO05D004292 2.8e-06 56.6 118 26.3
CARHR113480 Cardamine hirsuta HOM05D003605 ORTHO05D004292 2.8e-06 56.6 118 28.0
AL5G13060 Arabidopsis lyrata HOM05D004697 ORTHO05D006015 3.6e-06 56.2 45 60.0
CAN.G878.8 Capsicum annuum HOM05D003605 ORTHO05D004292 3.6e-06 56.2 122 29.5
BcaB08g35052 Brassica carinata HOM05D003605 ORTHO05D004292 4.7e-06 55.8 118 26.3
ECA232G4497 Erigeron canadensis HOM05D003605 ORTHO05D004292 4.7e-06 55.8 118 29.7
Sp4g01300 Schrenkiella parvula HOM05D003605 ORTHO05D004292 8.1e-06 55.1 118 27.1
SMO351G0219 Selaginella moellendorffii HOM05D003605 ORTHO05D004292 8.1e-06 55.1 110 30.0


User provided reference genes

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