Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 3.1e-226 788.1 391 100.0
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 7.8e-161 570.9 386 73.8
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 1.3e-160 570.1 365 76.4
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 2.5e-159 565.8 370 76.2
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 4.3e-159 565.1 381 74.3
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 1.6e-158 563.1 380 73.4
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 6.2e-158 561.2 380 73.2
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 1.4e-157 560.1 369 74.0
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 4.4e-156 555.1 385 71.7
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.3e-155 553.5 364 73.9
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 1.7e-155 553.1 386 71.2
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 2.9e-155 552.4 401 69.6
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 3.7e-155 552.0 381 72.2
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 3.7e-155 552.0 380 72.1
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 5.4e-154 548.1 381 73.8
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 7.0e-154 547.7 384 70.8
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 7.0e-154 547.7 381 73.0
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 9.2e-154 547.4 370 73.5
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 2.0e-153 546.2 376 72.3
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 2.7e-153 545.8 361 74.0
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 3.5e-153 545.4 370 73.2
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 4.6e-153 545.0 380 71.3
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 7.8e-153 544.3 385 71.2
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 1.3e-152 543.5 386 71.5
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.3e-152 542.7 385 70.1
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 3.0e-152 542.3 398 70.1
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 8.6e-152 540.8 376 71.8
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 8.6e-152 540.8 379 71.8
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 1.5e-151 540.0 367 73.6
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.9e-151 539.7 380 70.8
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 3.3e-151 538.9 378 71.4
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 7.3e-151 537.7 384 70.6
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 4.7e-150 535.0 380 70.0
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.4e-149 533.5 395 68.6
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 1.8e-149 533.1 370 71.9
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.8e-149 533.1 381 70.9
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 4.0e-149 531.9 367 71.7
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.2e-148 530.4 367 71.4
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 4.4e-148 528.5 367 71.4
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 9.8e-148 527.3 367 70.8
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 4.9e-147 525.0 383 71.0
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 1.4e-146 523.5 366 71.3
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 1.9e-146 523.1 366 69.7
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 2.4e-146 522.7 367 68.9
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 3.2e-146 522.3 367 69.2
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.2e-146 522.3 389 67.4
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 4.1e-146 521.9 385 69.6
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 4.1e-146 521.9 383 70.2
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 5.4e-146 521.5 346 74.6
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 7.1e-146 521.2 366 70.2
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 9.2e-146 520.8 382 69.4
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 1.2e-145 520.4 387 69.5
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 2.1e-145 519.6 382 68.6
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 2.7e-145 519.2 379 66.8
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 6.0e-145 518.1 383 65.8
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 1.0e-144 517.3 377 69.2
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 1.7e-144 516.5 367 71.4
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 2.3e-144 516.2 356 71.6
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.1e-143 513.8 410 64.1
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 1.5e-143 513.5 357 72.3
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 1.9e-143 513.1 381 67.5
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 5.6e-143 511.5 395 66.3
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 5.6e-143 511.5 384 68.5
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 5.6e-143 511.5 369 66.9
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 7.3e-143 511.1 384 66.9
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 9.5e-143 510.8 385 68.3
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 1.2e-142 510.4 369 66.7
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 2.1e-142 509.6 356 71.3
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.1e-141 507.3 382 67.5
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 1.8e-141 506.5 370 67.3
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 4.0e-141 505.4 382 67.5
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 8.9e-141 504.2 369 66.4
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 1.5e-140 503.4 364 67.6
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 3.4e-140 502.3 366 68.6
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 4.4e-140 501.9 348 72.4
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 9.9e-140 500.7 357 70.6
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 1.3e-139 500.4 386 66.3
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 1.4e-138 496.9 357 69.7
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.9e-138 496.5 357 70.0
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 4.1e-138 495.4 383 65.5
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 1.2e-137 493.8 357 68.9
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.1e-135 487.3 352 68.8
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 2.5e-135 486.1 331 71.9
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 5.6e-135 485.0 367 65.7
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 2.1e-134 483.0 383 66.1
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 2.8e-134 482.6 356 68.5
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 2.8e-134 482.6 356 68.5
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 8.1e-134 481.1 367 67.8
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 2.7e-129 466.1 389 63.8
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 1.3e-128 463.8 406 60.8
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 3.3e-127 459.1 415 59.8
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 2.8e-126 456.1 325 68.0
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 5.3e-125 451.8 333 68.5
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 2.9e-123 446.0 342 67.0
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 3.0e-120 436.0 322 65.2
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 1.1e-117 427.6 380 60.0
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 2.3e-112 409.8 263 74.9
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 5.3e-109 398.7 327 60.6
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 3.9e-104 382.5 249 72.7
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.0e-100 370.2 307 62.2
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 7.4e-95 351.7 366 51.4
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.6e-94 350.5 265 66.8
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 5.3e-93 345.5 322 56.2
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 4.2e-90 335.9 202 79.7
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 2.2e-86 323.6 191 78.5
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.8e-85 320.5 262 61.5
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 3.7e-78 296.2 226 67.3
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.8e-77 293.9 163 83.4
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 8.0e-73 278.5 196 70.4
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 1.4e-69 267.7 281 47.3
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 9.8e-63 245.0 189 64.0
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 2.8e-62 243.4 220 58.2
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.9e-59 233.4 130 81.5
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 6.3e-54 215.7 219 49.8
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 3.3e-50 203.4 358 34.6
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 2.8e-49 200.3 113 78.8
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.4e-45 187.2 177 57.6
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 2.3e-43 180.6 119 74.8
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 4.0e-40 169.9 133 62.4
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 6.8e-40 169.1 131 62.6
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 4.4e-39 166.4 133 61.7
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 2.8e-33 147.1 146 54.1
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 1.1e-32 145.2 200 42.5
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.2e-31 141.7 146 54.8
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 4.4e-31 139.8 146 54.1
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 1.3e-30 138.3 240 35.8
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 2.1e-28 131.0 114 59.6
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 1.0e-27 128.6 85 76.5
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.1e-24 117.1 63 85.7
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 7.6e-23 112.5 72 75.0
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 1.7e-22 111.3 109 55.0
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 1.1e-21 108.6 75 64.0
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 2.8e-17 94.0 92 57.6
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 8.9e-16 89.0 65 66.2
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 1.3e-14 85.1 45 86.7
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 5.1e-11 73.2 45 73.3
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 2.4e-08 64.3 105 37.1
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 2.9e-06 57.4 34 70.6


User provided reference genes

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