Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 5.4e-182 641.0 347 100.0
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 2.6e-128 462.6 351 73.2
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 4.4e-123 445.3 351 70.9
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 8.2e-122 441.0 349 70.5
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.6e-117 426.8 350 69.7
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 2.7e-117 426.0 352 70.2
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.6e-117 425.6 351 68.9
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.1e-117 424.9 351 68.9
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 8.0e-117 424.5 352 69.0
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.5e-115 420.2 350 68.3
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 3.7e-114 415.6 354 67.5
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.4e-113 412.9 351 68.7
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 2.4e-113 412.9 350 67.4
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 4.1e-113 412.1 351 68.4
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 7.0e-113 411.4 352 67.6
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 1.6e-112 410.2 352 66.8
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 2.7e-112 409.5 352 66.8
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 2.7e-112 409.5 348 67.5
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 2.7e-112 409.5 350 67.1
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 5.9e-112 408.3 352 67.0
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 7.7e-112 407.9 351 66.4
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.0e-111 407.5 349 65.3
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 2.2e-111 406.4 349 65.0
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 2.9e-111 406.0 349 64.5
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 1.9e-110 403.3 352 66.8
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 4.2e-110 402.1 351 68.7
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 7.2e-110 401.4 349 63.9
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 7.2e-110 401.4 352 67.3
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.6e-109 400.2 352 65.6
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 1.6e-109 400.2 348 67.0
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 1.6e-109 400.2 349 63.9
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 6.1e-109 398.3 349 66.2
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 8.0e-109 397.9 349 64.2
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.4e-108 397.1 352 62.8
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 4.0e-108 395.6 361 63.2
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 8.8e-108 394.4 350 65.4
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 2.2e-106 389.8 349 63.3
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 2.2e-106 389.8 349 63.3
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 4.8e-106 388.7 364 64.0
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 1.1e-105 387.5 353 64.9
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.4e-105 386.3 352 65.6
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 1.2e-104 384.0 353 66.3
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.6e-104 383.6 349 62.8
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 1.6e-104 383.6 352 62.2
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.7e-104 382.9 352 63.6
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.7e-104 382.9 352 63.6
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 3.5e-104 382.5 350 64.3
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 4.5e-104 382.1 350 62.9
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 4.5e-104 382.1 349 62.5
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 4.5e-104 382.1 350 62.9
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 4.5e-104 382.1 351 65.5
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.3e-103 380.6 353 64.3
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 1.7e-103 380.2 352 61.9
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 2.3e-103 379.8 352 61.9
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 6.6e-103 378.3 359 63.2
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 8.6e-103 377.9 354 62.4
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 8.6e-103 377.9 349 62.2
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 1.1e-102 377.5 353 63.5
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 5.5e-102 375.2 349 61.9
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 5.5e-102 375.2 355 62.0
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 2.1e-101 373.2 349 61.6
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 2.8e-101 372.9 420 54.5
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 1.0e-100 370.9 356 62.9
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.0e-100 370.9 352 60.5
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.0e-100 370.9 352 60.2
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 3.0e-100 369.4 353 63.5
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 3.0e-100 369.4 353 61.2
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.5e-99 367.1 351 62.4
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 3.7e-98 362.5 345 62.9
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 3.7e-98 362.5 352 60.8
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 6.3e-98 361.7 367 60.2
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 4.1e-97 359.0 350 62.9
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 1.2e-96 357.5 352 60.5
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.2e-96 357.5 356 61.0
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 3.5e-96 355.9 351 60.7
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 4.5e-96 355.5 401 55.6
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 1.3e-95 354.0 350 62.9
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 6.6e-95 351.7 352 59.7
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 3.3e-94 349.4 352 61.4
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.6e-93 347.1 335 60.0
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 3.6e-93 345.9 365 57.8
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 6.1e-93 345.1 353 60.3
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 5.2e-92 342.0 352 59.4
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.5e-91 340.5 351 60.1
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 3.4e-91 339.3 351 61.3
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.3e-90 337.4 355 57.7
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 2.2e-90 336.7 301 64.8
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 3.7e-90 335.9 341 58.9
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 1.1e-86 324.3 373 57.4
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 3.3e-86 322.8 342 57.9
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 6.2e-85 318.5 346 56.9
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 5.8e-83 312.0 333 57.4
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 1.0e-79 301.2 358 53.6
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.9e-78 297.0 252 67.5
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 2.5e-78 296.6 379 49.6
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.2e-77 294.3 352 54.5
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 3.2e-73 279.6 351 51.0
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.1e-65 254.6 353 49.6
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 4.8e-61 239.2 232 60.8
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 2.0e-59 233.8 331 45.9
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 3.8e-58 229.6 317 49.2
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.9e-57 227.3 201 66.2
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 4.6e-56 222.6 235 59.1
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 2.1e-53 213.8 214 61.2
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 2.2e-50 203.8 229 56.3
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 2.5e-46 190.3 182 64.3
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 1.6e-45 187.6 141 74.5
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 1.1e-38 164.9 197 53.8
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 1.3e-37 161.4 376 36.7
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 2.1e-37 160.6 230 46.5
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.1e-37 160.6 235 45.5
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 4.8e-37 159.5 301 37.2
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 3.1e-36 156.8 237 43.5
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 4.1e-36 156.4 130 66.9
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 9.3e-33 145.2 105 76.2
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 2.7e-32 143.7 306 36.6
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 3.1e-28 130.2 226 42.9
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 3.4e-27 126.7 96 70.8
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 1.0e-26 125.2 370 32.2
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 1.4e-23 114.8 324 31.8
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 1.1e-20 105.1 71 77.5
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.8e-20 104.4 306 33.0
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 4.1e-20 103.2 101 56.4
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 2.5e-17 94.0 123 48.0
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 7.9e-16 89.0 92 55.4
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.3e-13 81.6 95 46.3
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 4.8e-13 79.7 77 61.0
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 6.3e-13 79.3 182 36.8
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 8.2e-13 79.0 86 57.0
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 5.9e-11 72.8 122 42.6
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 1.8e-07 61.2 135 36.3
Sopen03g009730 Solanum pennellii HOM05D005714 ORTHO05D006812 1.5e-06 58.2 90 41.1
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.5e-06 58.2 44 72.7
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 4.4e-06 56.6 103 42.7


User provided reference genes

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