Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 5.3e-287 990.3 504 100.0
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 9.2e-239 830.1 501 82.8
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 6.8e-234 813.9 490 83.3
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 6.8e-234 813.9 485 84.5
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.0e-233 812.4 499 81.0
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 7.5e-233 810.4 490 81.8
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 7.5e-233 810.4 495 82.2
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.7e-232 809.3 495 82.4
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.2e-232 808.9 489 82.4
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 2.2e-232 808.9 497 81.7
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 8.3e-232 807.0 492 81.5
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 8.3e-232 807.0 503 81.3
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.8e-231 805.8 499 81.8
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 2.4e-231 805.4 502 81.3
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.4e-231 804.3 499 81.6
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 7.0e-231 803.9 495 80.6
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.6e-230 802.7 503 80.7
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-229 800.0 499 81.6
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 5.0e-229 797.7 497 80.5
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.5e-228 796.2 497 80.3
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 2.5e-228 795.4 495 81.0
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 4.3e-228 794.7 490 79.8
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.2e-227 793.1 490 80.0
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.2e-227 793.1 503 79.5
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 1.0e-226 790.0 491 82.1
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.3e-226 788.9 499 79.0
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 2.3e-226 788.9 488 81.1
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 5.2e-226 787.7 504 80.0
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 6.8e-226 787.3 488 80.5
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.6e-225 785.4 488 80.3
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 3.4e-225 785.0 488 80.1
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 4.4e-225 784.6 499 80.0
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 1.7e-224 782.7 495 79.8
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.9e-224 781.9 488 79.9
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 3.7e-224 781.6 488 80.7
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.4e-223 779.6 500 78.2
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.4e-223 779.6 500 80.2
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.4e-223 779.6 500 80.2
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 4.1e-223 778.1 496 79.0
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 4.1e-223 778.1 499 77.4
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.6e-222 776.2 501 77.6
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 2.0e-222 775.8 499 79.6
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 4.6e-222 774.6 491 78.6
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 7.8e-222 773.9 486 79.8
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.7e-221 772.7 492 77.6
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.9e-221 771.5 497 78.1
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 8.6e-221 770.4 495 77.6
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 8.6e-221 770.4 497 77.9
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-220 770.0 496 78.8
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.1e-220 770.0 496 78.6
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 1.1e-220 770.0 492 77.4
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.5e-220 769.6 492 77.6
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.9e-220 769.2 500 78.4
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.9e-220 769.2 497 77.3
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 5.6e-220 767.7 497 78.1
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 7.3e-220 767.3 496 77.0
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 9.5e-220 766.9 497 77.1
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 9.5e-220 766.9 486 78.2
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.2e-219 766.5 497 77.1
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.6e-219 766.1 497 77.3
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.6e-219 766.1 508 76.8
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.8e-219 765.4 497 77.7
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 3.6e-219 765.0 482 79.7
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 8.1e-219 763.8 497 77.5
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 1.4e-218 763.1 532 75.0
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.4e-218 763.1 501 77.0
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.8e-218 762.7 497 77.3
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.8e-218 762.7 494 78.3
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.8e-218 762.7 498 76.5
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.8e-218 762.7 498 76.5
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 2.3e-218 762.3 498 76.5
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 4.0e-218 761.5 512 75.4
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 6.8e-218 760.8 495 77.0
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.2e-217 760.0 497 76.7
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 3.4e-217 758.4 482 79.7
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 3.4e-217 758.4 496 76.0
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 5.8e-217 757.7 496 77.0
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 7.5e-217 757.3 497 75.9
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.3e-216 756.5 508 75.4
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 2.2e-216 755.7 502 76.5
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.2e-216 755.7 497 77.1
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.9e-215 752.7 502 75.3
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 3.2e-215 751.9 494 76.7
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 7.1e-215 750.7 491 76.6
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 2.1e-214 749.2 508 74.8
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 7.8e-214 747.3 495 76.4
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.3e-213 746.5 488 77.5
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 2.3e-213 745.7 526 74.0
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 3.0e-213 745.3 500 75.0
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.0e-213 745.3 483 78.1
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 8.9e-210 733.8 500 74.4
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 8.9e-210 733.8 500 74.4
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 7.6e-209 730.7 503 74.4
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 3.2e-207 725.3 491 72.1
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.2e-206 723.4 493 72.8
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.7e-205 719.5 482 76.3
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 3.3e-204 715.3 495 73.9
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 3.3e-204 715.3 489 72.4
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 4.7e-203 711.4 458 77.1
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 2.4e-202 709.1 488 73.6
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 8.9e-202 707.2 503 71.0
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 2.4e-199 699.1 514 70.0
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 4.2e-199 698.4 500 72.4
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.6e-198 696.4 525 69.7
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 4.6e-198 694.9 480 72.5
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 3.3e-196 688.7 488 71.9
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.3e-195 686.8 498 68.9
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.8e-195 685.6 490 69.6
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.8e-195 684.9 585 60.9
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 2.6e-193 679.1 491 69.7
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.3e-192 676.8 495 68.5
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 6.0e-190 667.9 497 68.6
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 7.9e-190 667.5 489 68.3
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.5e-188 663.3 501 69.7
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.9e-188 662.9 569 62.7
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 9.6e-188 660.6 492 70.1
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 1.6e-187 659.8 487 69.2
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.1e-187 659.4 489 69.1
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 3.6e-187 658.7 498 64.7
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 6.9e-186 654.4 483 71.2
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 5.5e-183 644.8 507 63.3
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 5.1e-181 638.3 496 65.1
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.5e-180 636.7 402 77.9
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.1e-178 630.6 508 66.7
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.7e-176 623.2 494 65.4
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 6.9e-162 574.7 527 56.9
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 5.9e-161 571.6 457 62.1
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 1.3e-160 570.5 377 76.9
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.9e-159 566.6 358 79.9
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 9.4e-159 564.3 549 57.0
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.1e-158 563.1 349 81.9
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.0e-157 559.3 401 73.1
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.3e-155 553.9 490 58.2
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.8e-155 552.7 361 78.4
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 2.9e-152 542.7 400 69.0
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.5e-148 530.4 368 75.0
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.8e-147 526.2 392 69.6
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 2.6e-140 503.1 358 73.2
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.0e-132 476.9 309 79.3
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.4e-132 476.1 409 64.1
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.3e-128 463.4 282 83.3
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 3.2e-127 459.5 464 52.2
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-122 444.5 274 82.1
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-122 444.1 344 65.7
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 3.6e-118 429.5 275 77.5
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.7e-94 349.4 233 73.4
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.3e-88 330.5 252 73.0
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-82 310.8 183 83.1
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.2e-82 309.7 191 80.1
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 7.8e-81 305.4 491 38.3
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.1e-74 285.0 204 71.6
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 3.8e-67 260.0 200 64.5
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 6.5e-59 232.6 137 83.2
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 9.3e-58 228.8 233 57.1
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.8e-56 224.6 327 45.0
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.9e-55 221.1 132 81.8
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.2e-54 217.6 153 75.2
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 4.5e-52 209.9 139 75.5
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.9e-51 207.2 296 48.6
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.8e-51 206.8 127 79.5
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 8.2e-46 189.1 114 79.8
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 6.7e-40 169.5 114 72.8
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 3.3e-39 167.2 139 59.7
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 4.4e-39 166.8 97 81.4
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 4.4e-39 166.8 97 81.4
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 2.7e-33 147.5 167 50.3
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 1.6e-25 121.7 69 85.5
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 2.7e-25 120.9 72 81.9
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 1.8e-24 118.2 63 88.9
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 4.0e-24 117.1 97 64.9
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 8.8e-24 115.9 74 74.3
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 8.2e-22 109.4 103 61.2
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 1.4e-21 108.6 67 76.1
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.7e-20 102.8 65 76.9
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.3e-19 102.1 65 81.5
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.7e-19 101.7 189 37.6
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 6.5e-19 99.8 65 73.8
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.9e-18 98.2 65 72.3
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.2e-16 90.1 77 62.3
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.1e-13 82.4 46 76.1
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 4.2e-10 70.5 38 81.6
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 8.0e-09 66.2 48 75.0


User provided reference genes

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