Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 2.6e-269 931.4 456 100.0
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.7e-82 310.8 335 51.9
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 2.9e-82 310.1 334 52.1
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 1.6e-80 304.3 329 50.5
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 7.8e-80 302.0 331 50.5
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 5.1e-79 299.3 328 49.7
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 8.7e-79 298.5 341 48.7
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 1.5e-78 297.7 329 50.2
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 2.5e-78 297.0 324 50.0
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.5e-78 297.0 328 50.3
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.5e-78 297.0 328 50.9
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.3e-78 296.6 317 52.1
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 1.6e-77 294.3 323 50.8
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 2.1e-77 293.9 330 50.6
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.1e-76 291.6 330 50.3
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 6.9e-76 288.9 333 50.8
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 2.0e-75 287.3 351 47.6
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 9.9e-75 285.0 341 46.3
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 1.3e-74 284.6 315 50.5
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 2.2e-74 283.9 353 46.2
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.9e-74 283.5 341 45.7
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 8.4e-74 282.0 338 48.8
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.1e-73 281.6 316 50.3
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 4.2e-73 279.6 316 50.3
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 5.4e-73 279.3 365 46.0
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 1.2e-72 278.1 350 47.1
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 1.2e-72 278.1 341 45.5
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 4.6e-72 276.2 341 45.5
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 6.0e-72 275.8 338 47.9
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 1.0e-71 275.0 352 45.7
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 1.3e-71 274.6 341 46.6
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.3e-71 274.6 341 45.5
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 1.3e-71 274.6 348 46.8
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 6.7e-71 272.3 316 49.7
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 8.7e-71 271.9 341 44.3
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 1.1e-70 271.6 341 44.6
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 1.5e-70 271.2 341 45.2
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.5e-70 271.2 341 45.2
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 2.1e-69 267.3 323 48.0
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.4e-68 264.6 342 44.7
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 1.4e-68 264.6 342 44.7
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 4.0e-68 263.1 341 44.3
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 1.5e-67 261.2 371 42.3
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 2.0e-67 260.8 334 46.7
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 2.6e-67 260.4 326 47.9
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 7.6e-67 258.8 323 47.7
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 3.8e-66 256.5 324 47.2
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 4.9e-66 256.1 316 48.7
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 1.4e-65 254.6 334 44.3
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 1.4e-65 254.6 334 44.0
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 2.4e-65 253.8 323 44.9
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 4.2e-65 253.1 342 43.0
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 5.5e-65 252.7 337 45.4
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 7.1e-65 252.3 342 43.3
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 9.3e-65 251.9 360 43.3
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-64 251.5 281 50.5
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 1.2e-64 251.5 299 48.5
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 1.2e-64 251.5 356 44.4
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.6e-64 251.1 342 43.9
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 2.7e-64 250.4 323 46.7
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 4.6e-64 249.6 324 44.8
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 4.6e-64 249.6 334 44.6
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 7.9e-64 248.8 330 44.5
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 5.6e-62 242.7 351 44.4
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 1.3e-61 241.5 328 43.9
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.6e-61 241.1 345 43.5
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 8.2e-61 238.8 330 44.2
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.2e-59 235.0 327 41.9
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 2.6e-59 233.8 333 41.4
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 4.5e-59 233.0 333 42.0
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 5.8e-59 232.6 331 41.7
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.3e-58 231.5 327 41.3
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 6.5e-58 229.2 331 42.6
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.1e-57 228.4 336 41.4
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.4e-57 228.0 322 43.5
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 4.2e-57 226.5 357 42.0
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.5e-56 223.4 380 37.6
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 4.6e-56 223.0 326 40.2
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.0e-55 221.9 324 42.9
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 1.3e-55 221.5 327 41.3
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.1e-54 218.4 342 39.2
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.1e-54 218.4 344 39.2
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 2.5e-54 217.2 330 40.0
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 2.5e-54 217.2 277 46.2
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 9.7e-54 215.3 335 41.2
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 1.1e-52 211.8 306 40.8
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 4.1e-52 209.9 329 38.9
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 4.1e-52 209.9 350 37.7
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 1.2e-51 208.4 403 36.5
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 3.4e-51 206.8 328 40.2
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 4.5e-51 206.5 260 45.8
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 5.9e-51 206.1 268 43.7
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 1.3e-50 204.9 319 40.4
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 5.0e-50 203.0 318 39.0
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 3.2e-49 200.3 319 39.2
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 5.5e-49 199.5 324 39.8
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 2.1e-48 197.6 330 37.0
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 2.3e-47 194.1 323 38.7
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 6.3e-45 186.0 344 34.9
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 1.2e-43 181.8 325 37.5
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.5e-43 181.4 344 35.2
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 2.6e-43 180.6 325 37.5
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 6.3e-37 159.5 300 35.3
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.2e-35 155.2 228 40.4
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 5.9e-35 152.9 281 35.9
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 1.3e-34 151.8 221 40.7
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 2.2e-34 151.0 324 31.2
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 3.8e-34 150.2 337 31.5
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 7.2e-33 146.0 329 31.6
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-32 145.2 123 63.4
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 1.7e-29 134.8 170 49.4
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 3.7e-29 133.7 170 49.4
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 6.3e-29 132.9 141 54.6
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.1e-24 117.9 122 52.5
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 2.7e-24 117.5 314 29.6
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 7.5e-22 109.4 346 26.6
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.8e-20 104.8 93 60.2
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 2.9e-18 97.4 64 70.3
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-17 95.5 64 68.8
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.5e-14 85.1 58 65.5
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.5e-14 85.1 135 43.0
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 4.8e-13 80.1 147 42.2
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 1.2e-08 65.5 44 61.4
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 1.0e-07 62.4 167 28.7
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 6.8e-07 59.7 142 24.6


User provided reference genes

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