Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.0e-82 310.1 162 100.0
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 2.4e-68 262.3 159 84.9
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 4.6e-67 258.1 161 80.1
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 6.0e-67 257.7 163 79.1
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.3e-66 256.5 163 79.1
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 8.7e-66 253.8 163 78.5
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 8.7e-66 253.8 163 78.5
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 3.3e-65 251.9 159 80.5
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 5.6e-65 251.1 160 81.2
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 1.6e-64 249.6 159 81.8
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.8e-64 248.8 159 80.5
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 2.8e-64 248.8 161 78.9
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 3.7e-64 248.4 159 79.9
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.4e-63 246.5 159 78.6
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.8e-63 246.1 159 80.5
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 2.4e-63 245.7 159 81.1
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 4.0e-63 245.0 159 78.6
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 3.4e-62 241.9 159 79.9
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 5.8e-62 241.1 155 81.9
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 1.0e-61 240.4 158 77.2
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 1.3e-61 240.0 163 76.1
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 1.3e-61 240.0 160 79.4
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.3e-61 240.0 159 78.0
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 2.2e-61 239.2 163 76.1
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 2.2e-61 239.2 160 78.8
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 3.8e-61 238.4 162 77.8
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 6.5e-61 237.7 160 78.1
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 6.5e-61 237.7 160 78.1
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 1.4e-60 236.5 160 78.1
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.4e-60 236.5 159 76.7
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 3.2e-60 235.3 158 77.2
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 4.2e-60 235.0 162 76.5
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 9.3e-60 233.8 158 76.6
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 9.3e-60 233.8 158 76.6
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 9.3e-60 233.8 160 75.6
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 2.1e-59 232.6 157 77.1
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 2.1e-59 232.6 160 76.2
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 2.7e-59 232.3 163 73.6
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.5e-59 231.9 160 76.2
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 4.6e-59 231.5 158 76.6
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 4.6e-59 231.5 162 72.8
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 4.6e-59 231.5 163 76.1
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 1.0e-58 230.3 162 73.5
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 1.3e-58 229.9 162 74.7
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.8e-58 229.6 163 74.8
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.3e-58 229.2 157 76.4
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 2.3e-58 229.2 160 74.4
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 2.3e-58 229.2 160 74.4
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 3.9e-58 228.4 147 77.6
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 8.7e-58 227.3 162 72.8
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.1e-57 226.9 159 72.3
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.9e-57 226.1 164 72.0
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 3.3e-57 225.3 160 75.0
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 3.3e-57 225.3 160 75.0
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 7.4e-57 224.2 163 71.8
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 9.6e-57 223.8 157 76.4
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 9.6e-57 223.8 162 72.2
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 1.3e-56 223.4 160 74.4
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.6e-56 223.0 146 79.5
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 1.6e-56 223.0 163 72.4
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 2.8e-56 222.2 147 78.2
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 3.7e-56 221.9 160 74.4
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 8.2e-56 220.7 160 71.2
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.4e-55 219.2 153 77.1
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 2.4e-55 219.2 161 73.9
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.1e-55 218.8 156 73.7
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 6.9e-55 217.6 187 64.7
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 6.9e-55 217.6 156 73.7
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 6.9e-55 217.6 193 63.7
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 9.0e-55 217.2 156 73.1
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 1.2e-54 216.9 159 71.1
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 2.0e-54 216.1 156 72.4
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.6e-54 215.7 150 76.7
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 4.5e-54 214.9 156 71.8
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 5.9e-54 214.5 160 70.0
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 5.9e-54 214.5 160 69.4
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 7.6e-54 214.2 142 76.1
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 1.7e-53 213.0 143 74.8
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.9e-53 212.2 151 72.2
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 2.9e-53 212.2 158 72.8
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 3.8e-53 211.8 158 70.9
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 5.0e-53 211.5 147 73.5
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 6.5e-53 211.1 164 68.3
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.1e-52 210.3 158 70.3
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 3.2e-52 208.8 142 74.6
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 9.3e-52 207.2 154 69.5
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.2e-51 206.8 162 65.4
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 1.2e-51 206.8 158 70.3
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 1.6e-51 206.5 141 75.2
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 1.6e-51 206.5 163 66.9
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 4.6e-51 204.9 141 75.9
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 6.1e-51 204.5 142 71.1
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 1.8e-50 203.0 154 67.5
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.3e-50 202.6 148 73.0
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 6.7e-50 201.1 159 66.7
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.5e-49 199.9 144 69.4
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 4.3e-49 198.4 144 70.1
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 1.3e-48 196.8 130 80.8
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.6e-48 196.4 158 65.8
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 4.8e-48 194.9 130 80.0
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 5.3e-47 191.4 188 56.9
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 2.6e-46 189.1 125 76.8
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 2.6e-46 189.1 124 75.0
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 7.7e-46 187.6 132 72.0
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.9e-45 185.7 118 80.5
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 5.5e-44 181.4 157 63.1
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.4e-42 176.8 108 83.3
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.4e-42 176.8 156 59.0
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.7e-40 169.9 99 86.9
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 6.3e-40 167.9 103 83.5
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 9.1e-39 164.1 104 80.8
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 2.0e-38 162.9 109 78.0
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 3.4e-38 162.2 103 78.6
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 7.7e-38 161.0 101 80.2
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 2.2e-37 159.5 108 75.0
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 7.2e-36 154.5 108 76.9
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.2e-35 153.7 117 65.8
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.5e-33 146.7 113 66.4
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 3.3e-33 145.6 118 62.7
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 9.7e-33 144.1 110 69.1
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 1.3e-32 143.7 84 82.1
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.3e-32 143.7 142 55.6
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 5.3e-31 138.3 150 46.0
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 3.8e-29 132.1 95 73.7
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 4.2e-28 128.6 79 82.3
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.7e-21 106.7 107 55.1
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 3.8e-21 105.5 113 52.2
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 6.1e-19 98.2 124 46.8
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 8.8e-18 94.4 124 42.7
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 7.5e-17 91.3 55 85.5
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 5.4e-15 85.1 120 41.7
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 3.5e-14 82.4 66 63.6
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.7e-11 72.8 54 66.7
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 1.8e-10 70.1 52 67.3
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 1.5e-09 67.0 39 82.1
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 1.3e-08 63.9 48 66.7
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 1.3e-08 63.9 48 66.7
Glyma.08G224900 Glycine max HOM05D005569 ORTHO05D007052 9.2e-07 57.8 31 80.6
Aqoxy4G02387 Aquilegia oxysepala HOM05D000289 ORTHO05D000208 7.7e-06 54.7 126 31.0


User provided reference genes

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