Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 5.8e-244 847.4 527 100.0
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 2.9e-163 579.3 538 72.9
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.6e-159 566.2 527 72.1
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.7e-158 563.5 528 72.3
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 3.7e-158 562.4 551 69.1
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.8e-157 560.1 530 69.8
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 7.8e-156 554.7 535 68.8
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 1.3e-155 553.9 446 74.7
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.7e-155 553.5 436 75.7
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 1.7e-155 553.5 441 80.0
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 5.0e-155 552.0 470 75.5
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 5.0e-155 552.0 476 75.4
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 6.6e-155 551.6 531 69.9
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.1e-154 550.8 531 71.0
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 1.2e-153 547.4 480 70.6
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.2e-153 547.4 544 65.6
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 1.2e-153 547.4 498 71.9
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 2.1e-153 546.6 535 65.2
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 3.1e-152 542.7 458 75.8
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 4.0e-152 542.3 434 74.4
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 5.2e-152 542.0 526 65.6
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 6.8e-152 541.6 462 76.6
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 2.0e-151 540.0 451 78.0
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 2.6e-151 539.7 569 66.6
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 4.4e-151 538.9 447 77.0
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 7.5e-151 538.1 529 65.8
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 9.8e-151 537.7 552 62.0
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 1.3e-150 537.3 468 70.5
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 2.2e-150 536.6 439 77.7
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 2.2e-150 536.6 439 77.7
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 2.2e-150 536.6 447 76.7
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 2.2e-150 536.6 446 71.7
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 2.9e-150 536.2 539 68.5
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.7e-150 535.8 528 69.5
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 6.4e-150 535.0 533 64.7
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 6.4e-150 535.0 435 73.8
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 8.3e-150 534.6 446 76.2
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.1e-149 534.3 438 76.7
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.9e-149 533.5 481 72.6
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.9e-149 533.5 446 76.0
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.4e-149 533.1 447 76.1
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 9.2e-149 531.2 445 70.8
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 9.2e-149 531.2 434 77.6
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.2e-148 530.8 526 70.2
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 1.6e-148 530.4 443 77.0
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.6e-148 530.4 543 67.4
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 2.0e-148 530.0 440 76.6
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 3.5e-148 529.3 553 62.6
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 4.6e-148 528.9 553 62.6
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.0e-148 528.5 528 68.8
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.0e-147 527.7 427 78.0
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.5e-146 523.9 453 63.6
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 3.3e-146 522.7 471 72.0
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 4.3e-146 522.3 554 66.4
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.3e-146 522.3 560 61.2
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 5.6e-146 521.9 548 67.2
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 5.6e-146 521.9 550 62.4
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 5.6e-146 521.9 557 60.7
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.6e-145 519.2 435 77.9
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 5.2e-144 515.4 437 76.4
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.9e-144 514.6 435 77.2
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 2.6e-143 513.1 527 65.3
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.3e-142 510.8 438 70.3
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.3e-142 510.8 482 73.0
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 2.2e-142 510.0 435 75.6
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 2.2e-142 510.0 435 75.6
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 2.9e-142 509.6 394 83.8
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 4.9e-142 508.8 536 65.3
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 1.1e-141 507.7 400 77.0
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 1.1e-141 507.7 427 73.5
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.9e-141 506.9 446 73.3
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 4.1e-141 505.8 438 70.1
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 9.2e-141 504.6 451 68.7
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.2e-140 504.2 427 71.2
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.6e-140 503.8 529 66.7
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 3.5e-140 502.7 563 64.1
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 4.6e-140 502.3 541 64.0
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 6.0e-140 501.9 489 68.3
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 6.0e-140 501.9 463 71.7
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 7.8e-140 501.5 450 72.9
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 1.3e-139 500.7 528 63.6
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.3e-139 500.7 527 66.4
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.1e-139 498.8 433 75.8
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 1.1e-138 497.7 617 50.9
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.2e-137 491.9 544 64.3
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 1.1e-136 491.1 514 66.1
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 3.1e-136 489.6 578 54.3
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 8.9e-136 488.0 445 69.4
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 2.6e-135 486.5 454 66.1
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 7.1e-133 478.4 450 67.1
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 1.2e-132 477.6 410 71.0
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 4.6e-132 475.7 468 64.5
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 5.1e-131 472.2 439 71.1
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 9.6e-130 468.0 530 65.7
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 1.6e-129 467.2 491 67.0
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 2.1e-129 466.8 528 64.2
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 6.8e-128 461.8 443 70.7
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.5e-127 460.7 402 70.6
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 7.6e-127 458.4 381 72.4
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 1.3e-126 457.6 529 61.2
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 1.4e-125 454.1 551 51.7
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 5.4e-125 452.2 437 65.9
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 7.8e-124 448.4 410 73.2
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 5.1e-123 445.7 462 63.0
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.6e-121 440.7 445 69.7
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 1.6e-121 440.7 355 69.0
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 3.4e-119 433.0 421 69.8
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.2e-116 424.5 442 67.6
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 4.3e-114 416.0 449 59.7
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 2.1e-113 413.7 473 63.2
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 4.0e-112 409.5 519 59.2
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 6.9e-112 408.7 438 61.4
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.0e-111 407.1 420 69.3
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 5.8e-111 405.6 430 69.1
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 4.3e-106 389.4 406 63.8
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 2.2e-102 377.1 480 49.6
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 5.5e-101 372.5 432 59.5
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 2.7e-100 370.2 394 65.0
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.9e-94 350.1 352 64.8
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 6.1e-92 342.4 419 53.5
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 1.8e-91 340.9 328 64.6
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 6.3e-89 332.4 392 58.7
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 1.2e-84 318.2 343 70.3
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 5.1e-83 312.8 383 63.7
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 2.2e-78 297.4 239 67.4
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 3.6e-76 290.0 386 54.7
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 4.7e-76 289.7 278 55.0
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.3e-73 281.6 605 40.8
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 1.5e-69 268.1 287 72.8
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 5.5e-69 266.2 474 45.8
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 7.2e-53 212.6 377 37.4
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.6e-52 210.3 152 69.7
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-48 198.4 141 70.2
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.0e-48 196.1 141 69.5
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.2e-47 195.3 141 67.4
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 3.8e-46 190.3 182 58.8
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 1.2e-44 185.3 130 73.1
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.8e-43 179.5 168 58.3
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.4e-42 177.2 144 62.5
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.9e-41 173.3 134 64.2
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.0e-35 155.6 171 52.6
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.9e-35 152.5 128 61.7
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.2e-33 147.9 89 82.0
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.8e-28 131.0 106 63.2
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.5e-26 122.9 73 78.1
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 3.7e-25 120.6 93 64.5
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 5.2e-19 100.1 209 34.0
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 1.1e-16 92.4 55 78.2
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 1.2e-15 89.0 58 72.4
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 6.0e-15 86.7 308 27.9
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 4.0e-11 73.9 71 62.0
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.0e-10 71.6 52 73.1
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 5.8e-10 70.1 82 51.2
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 2.1e-07 61.6 67 52.2


User provided reference genes

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