Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.8e-114 416.0 225 100.0
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 3.7e-91 338.6 225 72.4
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.2e-89 333.6 222 72.5
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 3.9e-88 328.6 220 72.7
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 1.1e-87 327.0 219 75.8
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 1.1e-87 327.0 220 82.3
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 1.9e-87 326.2 225 69.8
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 1.6e-86 323.2 219 82.6
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 2.1e-86 322.8 216 81.0
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 2.8e-86 322.4 217 82.0
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 3.6e-86 322.0 218 72.9
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 6.2e-86 321.2 220 80.9
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 6.2e-86 321.2 219 82.2
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 6.2e-86 321.2 220 70.9
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 1.8e-85 319.7 214 71.0
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 2.3e-85 319.3 219 71.2
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 2.3e-85 319.3 225 69.8
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 6.8e-85 317.8 214 72.0
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 6.8e-85 317.8 210 72.4
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 8.9e-85 317.4 222 69.8
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.2e-84 317.0 219 79.9
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 1.5e-84 316.6 214 71.5
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 3.4e-84 315.5 212 73.1
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 1.3e-83 313.5 214 69.6
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 1.3e-83 313.5 214 69.6
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 1.7e-83 313.2 221 70.6
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 2.2e-83 312.8 210 71.0
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 2.2e-83 312.8 213 70.0
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 2.9e-83 312.4 220 80.5
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 4.9e-83 311.6 220 70.0
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 4.9e-83 311.6 217 79.7
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 8.3e-83 310.8 210 82.4
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.1e-82 310.5 220 78.2
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.4e-82 310.1 218 81.2
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 1.9e-82 309.7 222 68.0
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 3.2e-82 308.9 219 81.3
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 5.4e-82 308.1 219 71.7
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 9.2e-82 307.4 220 69.1
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.2e-81 307.0 215 69.3
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 1.6e-81 306.6 210 69.5
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 2.1e-81 306.2 210 69.0
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 2.1e-81 306.2 211 69.7
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 3.5e-81 305.4 210 69.0
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 3.5e-81 305.4 210 69.0
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 6.0e-81 304.7 225 68.0
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 6.0e-81 304.7 225 68.0
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 6.0e-81 304.7 225 68.0
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 6.0e-81 304.7 225 68.0
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 6.0e-81 304.7 225 68.0
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.0e-80 303.9 210 81.4
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 1.3e-80 303.5 218 71.1
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 1.3e-80 303.5 218 70.2
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 1.3e-80 303.5 220 67.3
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.0e-80 302.4 220 67.3
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 3.0e-80 302.4 218 79.8
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.9e-80 302.0 219 67.1
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 3.9e-80 302.0 222 75.2
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 5.1e-80 301.6 214 77.1
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 5.1e-80 301.6 214 77.1
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 5.1e-80 301.6 219 79.0
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 5.1e-80 301.6 214 67.8
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 6.6e-80 301.2 219 66.7
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 1.1e-79 300.4 211 68.7
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.1e-79 300.4 219 79.0
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 1.5e-79 300.1 222 68.5
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 2.5e-79 299.3 220 66.8
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.3e-79 298.9 219 66.7
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 4.3e-79 298.5 219 69.4
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 5.6e-79 298.1 216 68.1
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 9.5e-79 297.4 214 79.4
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 1.2e-78 297.0 215 68.8
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 1.6e-78 296.6 221 76.9
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.6e-78 296.6 220 65.9
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 2.8e-78 295.8 213 68.5
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 8.1e-78 294.3 218 78.4
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 1.1e-77 293.9 215 66.0
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 3.1e-77 292.4 218 67.9
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 6.8e-77 291.2 215 76.7
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.5e-76 290.0 219 63.9
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 2.0e-76 289.7 223 64.1
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 4.4e-76 288.5 218 66.1
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 4.4e-76 288.5 212 79.2
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 4.4e-76 288.5 214 65.4
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 5.8e-76 288.1 218 66.1
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 7.6e-76 287.7 215 65.6
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 7.6e-76 287.7 214 65.4
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 9.9e-76 287.3 217 65.0
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 3.7e-75 285.4 211 76.3
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 3.7e-75 285.4 211 68.2
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 4.9e-75 285.0 220 73.2
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 4.9e-75 285.0 220 73.2
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 3.2e-74 282.3 211 76.8
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 3.2e-74 282.3 212 78.3
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 9.2e-74 280.8 214 65.9
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 2.7e-73 279.3 211 66.8
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 3.5e-73 278.9 213 63.8
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 3.5e-73 278.9 211 67.8
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 1.0e-72 277.3 222 63.5
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 2.5e-71 272.7 213 63.8
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 5.2e-69 265.0 213 63.4
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.2e-68 263.8 211 62.1
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 2.6e-68 262.7 215 60.5
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 5.8e-68 261.5 215 61.4
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 2.9e-67 259.2 212 65.6
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 2.9e-67 259.2 212 65.6
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 6.4e-67 258.1 222 70.7
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 1.2e-65 253.8 218 61.0
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 2.7e-65 252.7 204 61.3
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 3.5e-65 252.3 215 60.0
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 7.8e-65 251.1 213 60.1
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.7e-64 250.0 219 60.3
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 4.3e-63 245.4 153 77.8
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 5.6e-63 245.0 212 67.5
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.1e-61 240.7 214 71.0
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 2.4e-61 239.6 178 66.9
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 9.0e-61 237.7 156 75.0
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 3.4e-60 235.7 154 72.7
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 9.9e-60 234.2 217 54.4
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 6.0e-57 224.9 129 78.3
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.9e-56 222.2 167 74.3
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 5.1e-56 221.9 213 53.5
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.1e-55 220.7 213 52.6
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 1.6e-54 216.9 211 53.1
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 3.6e-54 215.7 159 64.8
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 4.8e-54 215.3 217 64.5
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 5.3e-53 211.8 211 50.2
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 7.6e-52 208.0 213 49.3
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 9.9e-52 207.6 164 65.2
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 2.2e-51 206.5 138 72.5
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 5.5e-50 201.8 163 62.0
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 1.0e-48 197.6 212 59.9
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.5e-47 193.0 214 63.1
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 4.3e-47 192.2 140 67.9
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 1.4e-42 177.2 212 47.6
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 3.5e-41 172.6 130 65.4
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 2.4e-37 159.8 101 100.0
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 2.9e-35 152.9 89 80.9
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 7.9e-33 144.8 84 82.1
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 3.8e-11 72.8 212 29.7


User provided reference genes

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