Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 6.4e-55 217.2 115 100.0
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 4.5e-16 88.2 71 69.0
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 3.9e-12 75.1 69 62.3
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.5e-11 73.2 64 64.1
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 2.5e-11 72.4 65 60.0
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 2.5e-11 72.4 69 58.0
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 2.5e-11 72.4 69 59.4
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 3.3e-11 72.0 56 71.4
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 1.3e-10 70.1 75 60.0
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 1.3e-10 70.1 59 67.8
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 8.2e-10 67.4 62 64.5
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 1.1e-09 67.0 72 55.6
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 1.1e-09 67.0 69 58.0
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.8e-09 66.2 67 62.7
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 1.8e-09 66.2 63 58.7
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 1.8e-09 66.2 57 66.7
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.8e-09 66.2 64 54.7
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 2.4e-09 65.9 85 48.2
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 2.4e-09 65.9 71 57.7
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.4e-09 65.9 56 67.9
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 2.4e-09 65.9 64 57.8
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.1e-09 65.5 71 59.2
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.1e-09 65.5 71 59.2
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.3e-09 64.7 63 55.6
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.3e-09 64.7 63 55.6
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.3e-09 64.7 63 55.6
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.3e-09 64.7 63 55.6
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 5.3e-09 64.7 56 66.1
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 6.9e-09 64.3 54 66.7
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 6.9e-09 64.3 71 57.7
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 6.9e-09 64.3 71 57.7
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 6.9e-09 64.3 71 57.7
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 6.9e-09 64.3 63 55.6
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 6.9e-09 64.3 69 56.5
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 9.1e-09 63.9 66 60.6
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.1e-09 63.9 63 54.0
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 1.2e-08 63.5 62 58.1
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.5e-08 63.2 85 47.1
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 1.5e-08 63.2 63 55.6
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 1.5e-08 63.2 66 56.1
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 2.6e-08 62.4 64 60.9
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 3.4e-08 62.0 71 56.3
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 4.5e-08 61.6 71 54.9
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 4.5e-08 61.6 56 64.3
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 4.5e-08 61.6 71 56.3
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 7.7e-08 60.8 85 45.9
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.0e-07 60.5 69 56.5
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 1.0e-07 60.5 55 61.8
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 1.0e-07 60.5 55 61.8
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 1.0e-07 60.5 55 63.6
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.3e-07 60.1 85 49.4
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 1.7e-07 59.7 63 54.0
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 1.7e-07 59.7 62 53.2
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 2.2e-07 59.3 63 52.4
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 2.2e-07 59.3 85 50.6
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 2.9e-07 58.9 57 57.9
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 3.8e-07 58.5 69 55.1
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 3.8e-07 58.5 73 52.1
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.8e-07 58.5 63 54.0
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.8e-07 58.5 63 54.0
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 3.8e-07 58.5 63 54.0
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 5.0e-07 58.2 69 52.2
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 5.0e-07 58.2 41 78.0
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 5.0e-07 58.2 59 54.2
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 5.0e-07 58.2 62 53.2
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 5.0e-07 58.2 60 58.3
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 6.5e-07 57.8 71 50.7
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 6.5e-07 57.8 72 54.2
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 6.5e-07 57.8 44 68.2
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 6.5e-07 57.8 50 64.0
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 6.5e-07 57.8 50 64.0
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 6.5e-07 57.8 62 53.2
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 8.5e-07 57.4 66 57.6
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 1.1e-06 57.0 72 52.8
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.1e-06 57.0 72 52.8
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 1.4e-06 56.6 72 52.8
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 1.4e-06 56.6 85 47.1
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.4e-06 56.6 70 54.3
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 2.5e-06 55.8 47 68.1
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 2.5e-06 55.8 55 60.0
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 2.5e-06 55.8 69 47.8
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 3.2e-06 55.5 78 52.6
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 3.2e-06 55.5 78 52.6
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 3.2e-06 55.5 72 51.4
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 3.2e-06 55.5 71 49.3
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 3.2e-06 55.5 55 60.0
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 4.2e-06 55.1 55 54.5
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 5.5e-06 54.7 54 61.1
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 7.2e-06 54.3 80 46.2
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 7.2e-06 54.3 56 50.0
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 9.4e-06 53.9 48 62.5
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 9.4e-06 53.9 60 51.7
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 9.4e-06 53.9 73 50.7
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 9.4e-06 53.9 64 54.7
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 9.4e-06 53.9 69 49.3


User provided reference genes

Program Settings