Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 2153.6 1075 100.0
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1760.7 1087 79.3
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1753.4 1085 79.4
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1751.1 1085 79.4
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1750.7 1077 79.8
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1743.8 1090 78.0
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1738.0 1090 78.5
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1736.1 1079 78.7
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1736.1 1090 79.3
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1732.6 1091 78.1
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1730.3 1083 78.7
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1729.5 1077 79.0
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1728.0 1091 77.8
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1727.6 1085 78.4
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1721.4 1083 77.7
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1721.4 1079 79.1
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1718.4 1087 77.6
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1712.2 1085 78.1
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1709.9 1085 78.1
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1708.3 1068 78.3
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1707.6 1084 77.9
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1704.9 1075 76.8
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1702.6 1076 77.0
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1702.6 1083 76.5
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1701.4 1081 77.9
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1701.0 1085 77.2
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1700.6 1075 76.9
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1698.7 1085 77.4
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1698.3 1072 76.9
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1696.4 1084 77.2
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1696.4 1084 76.8
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1695.6 1075 76.7
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1695.2 1080 77.5
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1694.9 1085 77.5
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1693.7 1080 77.3
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1692.9 1085 77.2
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1692.6 1075 76.7
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1687.9 1088 75.6
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1687.5 1085 77.0
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1686.4 1088 77.1
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1686.0 1088 75.9
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1684.8 1087 75.6
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1683.3 1075 76.2
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1681.8 1099 74.4
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1681.4 1075 76.2
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1679.8 1075 76.1
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1679.8 1078 76.0
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1679.1 1088 75.6
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1678.7 1079 75.8
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1677.9 1085 76.5
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1676.4 1076 76.2
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1676.4 1076 76.2
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1674.1 1075 76.3
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1673.3 1065 76.6
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1672.1 1083 75.6
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1672.1 1076 76.0
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1671.8 1075 75.8
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1671.0 1076 75.9
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1670.2 1088 74.8
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1669.8 1076 75.9
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1669.4 1079 75.8
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1669.1 1088 75.7
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1661.0 1111 74.3
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1659.4 1106 73.1
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1654.4 1169 71.2
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1651.7 1082 75.2
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1649.0 1082 74.7
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1649.0 1082 74.7
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1648.6 1169 71.1
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1629.8 1085 75.6
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1629.0 1084 73.4
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1628.2 1075 74.5
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1626.3 1077 73.6
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1625.5 1079 74.8
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1621.3 1090 73.3
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1620.5 1081 74.2
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1619.4 1093 73.3
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1619.0 1089 73.8
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1612.8 1078 73.8
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1611.3 1078 74.0
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1606.7 1073 72.9
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1597.4 1084 72.1
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1595.5 1105 71.9
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1589.3 1092 72.1
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1587.0 1088 71.4
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1583.2 1085 72.5
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1581.2 1080 71.4
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1576.6 1020 76.3
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1085 72.4
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1574.3 1077 72.8
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1570.4 1146 68.4
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1568.1 1078 70.6
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1557.7 1070 70.5
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1550.8 1076 69.7
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1549.6 1084 70.6
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1548.9 1080 71.0
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1548.5 1103 71.4
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1547.3 1078 70.6
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1546.9 1076 70.6
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1541.9 994 76.1
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1539.2 1102 68.3
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1533.9 1084 69.6
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1522.3 998 75.4
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1507.7 1049 70.7
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1492.2 1098 67.2
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1491.5 1079 70.6
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1474.5 1074 67.7
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1471.4 1076 69.1
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1468.0 981 73.3
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1421.4 1096 64.2
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1389.0 1076 67.1
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1311.2 788 82.0
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1196.8 1079 55.0
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1189.5 717 81.9
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1181.0 689 84.2
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1172.1 1073 54.1
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1168.7 671 84.4
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1152.9 1079 53.1
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1151.7 1115 52.0
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1147.5 1080 53.5
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1095.5 754 71.6
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 1.1e-302 1043.5 834 61.4
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 2.9e-282 975.7 610 79.5
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 6.0e-280 968.0 817 61.9
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.4e-252 876.3 948 48.2
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 3.4e-251 872.5 629 71.4
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 2.5e-238 829.7 499 80.8
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.1e-232 810.1 631 63.5
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.8e-215 753.8 977 46.8
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 9.2e-180 635.2 603 55.1
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.8e-163 578.9 430 68.1
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 9.0e-151 538.9 305 84.6
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 5.3e-127 459.9 310 73.5
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 6.9e-127 459.5 384 63.0
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 6.1e-83 313.5 244 64.3
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 9.2e-79 299.7 289 54.7
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.8e-66 258.8 205 62.9
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 4.9e-64 250.8 136 83.8
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.6e-46 192.6 138 63.8
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 5.6e-36 157.5 162 54.3
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 1.3e-35 156.4 133 59.4
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 7.6e-33 147.1 108 63.0
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.1e-31 143.3 156 50.0
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 2.3e-29 135.6 73 84.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.3e-27 129.8 88 69.3
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 4.0e-26 124.8 97 66.0
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 2.7e-14 85.5 143 36.4
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.4e-13 83.2 47 78.7
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 2.3e-13 82.4 49 73.5
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 4.1e-10 71.6 76 44.7
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.5e-09 69.7 33 97.0
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 1.4e-07 63.2 39 74.4


User provided reference genes

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