Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 6.2e-70 267.3 131 100.0
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 7.8e-57 223.8 131 81.7
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 1.7e-56 222.6 131 80.9
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 1.7e-56 222.6 131 78.6
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 5.1e-56 221.1 131 82.4
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 6.6e-56 220.7 131 78.6
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 8.6e-56 220.3 131 79.4
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 1.9e-55 219.2 131 80.2
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 3.3e-55 218.4 131 78.6
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 3.3e-55 218.4 131 78.6
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 4.3e-55 218.0 131 77.9
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 9.5e-55 216.9 131 77.9
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 2.1e-54 215.7 131 75.6
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 2.1e-54 215.7 131 77.1
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 3.6e-54 214.9 133 79.7
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 3.6e-54 214.9 133 79.7
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 3.6e-54 214.9 128 79.7
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 4.7e-54 214.5 120 84.2
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 1.8e-53 212.6 133 77.4
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 2.3e-53 212.2 131 74.0
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 2.3e-53 212.2 131 78.6
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 5.2e-53 211.1 131 75.6
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 8.9e-53 210.3 130 76.9
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 8.9e-53 210.3 134 77.6
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 2.6e-52 208.8 131 74.8
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 7.6e-52 207.2 131 74.0
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 9.9e-52 206.8 131 74.8
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 9.9e-52 206.8 122 78.7
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 1.3e-51 206.5 132 75.8
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 6.4e-51 204.1 131 74.0
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 6.4e-51 204.1 131 74.0
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 8.4e-51 203.8 124 80.6
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 1.1e-50 203.4 130 74.6
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 1.1e-50 203.4 131 72.5
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 1.9e-50 202.6 129 73.6
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 2.4e-50 202.2 131 72.5
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 2.4e-50 202.2 128 75.0
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 3.2e-50 201.8 131 72.5
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 3.2e-50 201.8 131 75.6
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 4.1e-50 201.4 129 74.4
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 7.1e-50 200.7 158 63.9
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 9.2e-50 200.3 119 79.0
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 9.2e-50 200.3 128 74.2
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 1.6e-49 199.5 129 72.9
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 1.6e-49 199.5 129 74.4
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 3.5e-49 198.4 129 73.6
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 3.5e-49 198.4 129 72.9
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 3.5e-49 198.4 122 74.6
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 4.6e-49 198.0 122 77.0
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 4.6e-49 198.0 131 71.0
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 6.0e-49 197.6 132 69.7
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 7.8e-49 197.2 131 71.8
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 7.8e-49 197.2 133 69.9
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 7.8e-49 197.2 133 69.9
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 1.7e-48 196.1 131 69.5
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 3.0e-48 195.3 128 73.4
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 3.9e-48 194.9 134 72.4
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 5.1e-48 194.5 126 73.0
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 6.6e-48 194.1 131 74.8
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 1.1e-47 193.4 133 69.2
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 1.1e-47 193.4 131 71.0
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 1.5e-47 193.0 122 73.8
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.5e-47 193.0 122 73.8
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 1.5e-47 193.0 132 68.2
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 1.9e-47 192.6 122 74.6
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 3.3e-47 191.8 123 74.8
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 3.3e-47 191.8 123 74.8
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 4.3e-47 191.4 122 73.0
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 5.6e-47 191.0 134 70.1
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 1.2e-46 189.9 119 75.6
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 1.2e-46 189.9 119 75.6
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 1.2e-46 189.9 132 67.4
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 1.2e-46 189.9 132 67.4
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 2.1e-46 189.1 132 71.2
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 4.7e-46 188.0 119 74.8
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 4.7e-46 188.0 120 74.2
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 6.2e-46 187.6 134 70.1
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 6.2e-46 187.6 125 71.2
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 1.8e-45 186.0 128 67.2
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 1.8e-45 186.0 131 71.0
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 1.8e-45 186.0 162 60.5
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 1.8e-45 186.0 133 68.4
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 2.4e-45 185.7 132 71.2
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 6.8e-45 184.1 132 65.9
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 2.0e-44 182.6 132 68.2
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 3.4e-44 181.8 130 68.5
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 1.7e-43 179.5 130 67.7
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 4.9e-43 177.9 130 70.0
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 6.4e-43 177.6 131 68.7
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 6.4e-43 177.6 134 67.2
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 1.1e-42 176.8 132 65.2
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 9.3e-42 173.7 134 62.7
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 2.7e-41 172.2 119 68.9
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 6.0e-41 171.0 120 66.7
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 2.3e-40 169.1 122 65.6
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 9.6e-39 163.7 102 75.5
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 3.8e-35 151.8 119 57.1
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 1.2e-33 146.7 121 60.3
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 7.9e-33 144.1 119 54.6
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 5.6e-31 137.9 119 53.8
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 9.6e-31 137.1 131 55.7
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 2.4e-29 132.5 120 50.8
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 2.0e-28 129.4 69 87.0
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 2.6e-28 129.0 67 86.6
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 4.9e-27 124.8 68 82.4
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 6.0e-25 117.9 86 62.8
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 4.9e-19 98.2 63 73.0
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 1.4e-13 80.1 107 38.3
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 5.5e-10 68.2 51 62.7
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 3.5e-09 65.5 46 63.0
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 5.7e-07 58.2 59 42.4


User provided reference genes

Program Settings