Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc171.29 Carica papaya HOM05D000098 ORTHO05D000523 2.0e-46 188.7 94 100.0
MD09G1013000 Malus domestica HOM05D000098 ORTHO05D000523 9.4e-12 73.6 56 60.7
MD17G1013700 Malus domestica HOM05D000098 ORTHO05D000523 2.1e-11 72.4 56 58.9
Thecc.04G033800 Theobroma cacao HOM05D000098 ORTHO05D000523 3.6e-11 71.6 61 59.0
CiPaw.03G054100 Carya illinoinensis HOM05D000098 ORTHO05D000523 6.1e-11 70.9 54 61.1
Ciclev10016947m.g Citrus clementina HOM05D000098 ORTHO05D000523 6.1e-11 70.9 50 64.0
QL02p071678 Quercus lobata HOM05D000098 ORTHO05D000523 7.9e-11 70.5 52 65.4
Solyc02g094050.4 Solanum lycopersicum HOM05D000098 ORTHO05D000523 7.9e-11 70.5 53 58.5
Sopen02g038690 Solanum pennellii HOM05D000098 ORTHO05D000523 7.9e-11 70.5 53 58.5
ATR0561G220 Amborella trichopoda HOM05D000098 ORTHO05D000523 1.0e-10 70.1 54 55.6
CAN.G473.90 Capsicum annuum HOM05D000098 ORTHO05D000523 1.0e-10 70.1 59 59.3
Dinv25668 Davidia involucrata HOM05D000098 ORTHO05D000523 1.0e-10 70.1 62 59.7
Duzib147G1200 Durio zibethinus HOM05D000098 ORTHO05D000523 1.4e-10 69.7 55 58.2
Glyma.19G089200 Glycine max HOM05D000098 ORTHO05D000523 1.8e-10 69.3 56 60.7
Gohir.A07G227300 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.8e-10 69.3 48 64.6
Gohir.D07G234400 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.8e-10 69.3 48 64.6
Sabra16G0213100 Salix brachista HOM05D000098 ORTHO05D000523 1.8e-10 69.3 57 64.9
COL.COLO4_17173 Corchorus olitorius HOM05D000098 ORTHO05D000523 2.3e-10 68.9 43 72.1
Haze_14858 Corylus avellana HOM05D000098 ORTHO05D000523 2.3e-10 68.9 54 55.6
Gorai.001G270000 Gossypium raimondii HOM05D000098 ORTHO05D000523 2.3e-10 68.9 52 67.3
Potri.001G332200 Populus trichocarpa HOM05D000098 ORTHO05D000523 2.3e-10 68.9 50 64.0
TAR629G2880 Trochodendron aralioides HOM05D000098 ORTHO05D000523 2.3e-10 68.9 51 60.8
Cfa007242 Carpinus fangiana HOM05D000098 ORTHO05D000523 3.0e-10 68.6 58 55.2
Duzib264G0079 Durio zibethinus HOM05D000098 ORTHO05D000523 3.0e-10 68.6 61 57.4
Phvul.004G054700 Phaseolus vulgaris HOM05D000098 ORTHO05D000523 3.0e-10 68.6 50 64.0
Peaxi162Scf00692g00524 Petunia axillaris HOM05D000098 ORTHO05D000523 6.7e-10 67.4 52 57.7
EL10Ac2g02844 Beta vulgaris HOM05D000098 ORTHO05D000523 1.1e-09 66.6 48 64.6
Lju41A51T45 Lonicera japonica HOM05D000098 ORTHO05D000523 1.1e-09 66.6 52 59.6
Thhalv10005008m.g Eutrema salsugineum HOM05D000098 ORTHO05D000523 1.5e-09 66.2 52 55.8
FvH4_6g53210 Fragaria vesca HOM05D000098 ORTHO05D000523 1.5e-09 66.2 54 55.6
Medtr6g023760 Medicago truncatula HOM05D000098 ORTHO05D000523 1.5e-09 66.2 52 57.7
CARHR148410 Cardamine hirsuta HOM05D000098 ORTHO05D000523 2.0e-09 65.9 52 53.8
FAN05G1100 Fragaria x ananassa HOM05D000098 ORTHO05D000523 2.0e-09 65.9 54 55.6
FAN14G0530 Fragaria x ananassa HOM05D000098 ORTHO05D000523 2.0e-09 65.9 54 53.7
Glyma.05G076700 Glycine max HOM05D000098 ORTHO05D000523 2.0e-09 65.9 54 55.6
RcHm_v2.0_Chr2g0175271 Rosa chinensis HOM05D000098 ORTHO05D000523 2.0e-09 65.9 54 55.6
GSVIVG01001807001 Vitis vinifera HOM05D000098 ORTHO05D000523 2.0e-09 65.9 61 54.1
Aa31LG2G5210 Aethionema arabicum HOM05D000098 ORTHO05D000523 2.5e-09 65.5 51 56.9
arahy.Tifrunner.gnm1.ann1.5MI3H4 Arachis hypogaea HOM05D000098 ORTHO05D000523 2.5e-09 65.5 65 49.2
Atru.chr6.2537 Acer truncatum HOM05D000098 ORTHO05D000523 3.3e-09 65.1 50 58.0
Actinidia36188 Actinidia chinensis HOM05D000098 ORTHO05D000523 3.3e-09 65.1 53 56.6
Ca_04430_v3 Cicer arietinum L. HOM05D000098 ORTHO05D000523 3.3e-09 65.1 54 57.4
MSTRG.24088 Avicennia marina HOM05D000098 ORTHO05D000523 4.3e-09 64.7 64 51.6
Carub.0005s0543 Capsella rubella HOM05D000098 ORTHO05D000523 4.3e-09 64.7 52 53.8
AUR62026833 Chenopodium quinoa HOM05D000098 ORTHO05D000523 4.3e-09 64.7 53 54.7
Prupe.3G304200 Prunus persica HOM05D000098 ORTHO05D000523 4.3e-09 64.7 56 55.4
arahy.Tifrunner.gnm1.ann1.19LA55 Arachis hypogaea HOM05D000098 ORTHO05D000523 5.7e-09 64.3 54 55.6
Cc07_g00690 Coffea canephora HOM05D000098 ORTHO05D000523 5.7e-09 64.3 51 56.9
Manes.17G103900 Manihot esculenta HOM05D000098 ORTHO05D000523 5.7e-09 64.3 62 58.1
AL5G16320 Arabidopsis lyrata HOM05D000098 ORTHO05D000523 7.4e-09 63.9 52 51.9
BcaC03g17436 Brassica carinata HOM05D000098 ORTHO05D000523 7.4e-09 63.9 53 54.7
C02p53840 Brassica napus HOM05D000098 ORTHO05D000523 7.4e-09 63.9 53 54.7
BolC2t11452H Brassica oleracea HOM05D000098 ORTHO05D000523 7.4e-09 63.9 53 54.7
FAN09G1347 Fragaria x ananassa HOM05D000098 ORTHO05D000523 7.4e-09 63.9 54 53.7
FAN02G2652 Fragaria x ananassa HOM05D000098 ORTHO05D000523 9.7e-09 63.5 51 56.9
Lj2g0016183 Lotus japonicus HOM05D000098 ORTHO05D000523 9.7e-09 63.5 54 57.4
VMungo0464G0786 Vigna mungo HOM05D000098 ORTHO05D000523 9.7e-09 63.5 54 55.6
Eucgr.I01655 Eucalyptus grandis HOM05D000098 ORTHO05D000523 1.3e-08 63.2 64 48.4
C07p36250 Brassica napus HOM05D000098 ORTHO05D000523 1.7e-08 62.8 54 48.1
BolC7t44139H Brassica oleracea HOM05D000098 ORTHO05D000523 1.7e-08 62.8 54 48.1
BraA06t27066Z Brassica rapa HOM05D000098 ORTHO05D000523 1.7e-08 62.8 54 48.1
Lalb_Chr02g0157751 Lupinus albus HOM05D000098 ORTHO05D000523 1.7e-08 62.8 54 51.9
PGR142G3943 Punica granatum HOM05D000098 ORTHO05D000523 1.7e-08 62.8 60 50.0
THA.LOC104805333 Tarenaya hassleriana HOM05D000098 ORTHO05D000523 2.2e-08 62.4 52 53.8
TPR.G28878 Trifolium pratense HOM05D000098 ORTHO05D000523 2.8e-08 62.0 52 57.7
AT3G27200 Arabidopsis thaliana HOM05D000098 ORTHO05D000523 3.7e-08 61.6 52 48.1
Psat0s1551g0240 Pisum sativum HOM05D000098 ORTHO05D000523 3.7e-08 61.6 53 49.1
SalBow4G1536 Salvia bowleyana HOM05D000098 ORTHO05D000523 3.7e-08 61.6 54 50.0
SalBow4G2319 Salvia bowleyana HOM05D000098 ORTHO05D000523 3.7e-08 61.6 54 50.0
A06p41410 Brassica napus HOM05D000098 ORTHO05D000523 4.8e-08 61.2 54 48.1
CANSAT64G2237 Cannabis sativa HOM05D000098 ORTHO05D000523 4.8e-08 61.2 59 45.8
Glyma.19G071032 Glycine max HOM05D000098 ORTHO05D000523 4.8e-08 61.2 52 57.7
Lalb_Chr21g0317521 Lupinus albus HOM05D000098 ORTHO05D000523 4.8e-08 61.2 54 50.0
Phvul.001G095100 Phaseolus vulgaris HOM05D000098 ORTHO05D000523 4.8e-08 61.2 56 51.8
HanXRQChr09g0256161 Helianthus annuus HOM05D000098 ORTHO05D000523 6.3e-08 60.8 56 57.1
MBI11_g07449_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D000523 6.3e-08 60.8 63 44.4
Nn4g22359 Nelumbo nucifera HOM05D000098 ORTHO05D000523 6.3e-08 60.8 49 57.1
Sp2g16330 Schrenkiella parvula HOM05D000098 ORTHO05D000523 6.3e-08 60.8 52 50.0
MELO3C008198.2 Cucumis melo HOM05D000098 ORTHO05D000523 8.2e-08 60.5 52 50.0
Sc07g0004130 Simmondsia chinensis HOM05D000098 ORTHO05D000523 8.2e-08 60.5 52 51.9
VMungo1383G1312 Vigna mungo HOM05D000098 ORTHO05D000523 8.2e-08 60.5 54 51.9
DCAR_002951 Daucus carota HOM05D000098 ORTHO05D000523 1.1e-07 60.1 61 44.3
Lsat_1_v5_gn_4_185141 Lactuca sativa HOM05D000098 ORTHO05D000523 1.4e-07 59.7 70 42.9
AUR62037219 Chenopodium quinoa HOM05D000098 ORTHO05D000523 1.8e-07 59.3 50 52.0
Rhsim10G0007300 Rhododendron simsii HOM05D000098 ORTHO05D000523 1.8e-07 59.3 71 42.3
BcaC06g33844 Brassica carinata HOM05D000098 ORTHO05D000523 2.4e-07 58.9 54 44.4
BcaC06g33847 Brassica carinata HOM05D000098 ORTHO05D000523 2.4e-07 58.9 62 45.2
CsaV3_2G034170 Cucumis sativus L. HOM05D000098 ORTHO05D000523 2.4e-07 58.9 34 70.6
Migut.F00075 Erythranthe guttata HOM05D000098 ORTHO05D000523 3.1e-07 58.5 52 48.1
QL04p029975 Quercus lobata HOM05D000098 ORTHO05D000523 3.1e-07 58.5 47 53.2
ECA232G2595 Erigeron canadensis HOM05D000172 ORTHO05D000781 4.1e-07 58.2 34 70.6
HanXRQChr15g0486951 Helianthus annuus HOM05D000098 ORTHO05D000523 4.1e-07 58.2 57 47.4
Sed0011368 Sechium edule HOM05D000098 ORTHO05D000523 4.1e-07 58.2 40 62.5
SGA_v2.0_scaffold18G08529 Striga asiatica HOM05D000098 ORTHO05D000523 4.1e-07 58.2 53 52.8
HPP92_001534 Vanilla planifolia HOM05D000098 ORTHO05D000523 4.1e-07 58.2 77 36.4
vmacro05948 Vaccinium macrocarpon HOM05D000098 ORTHO05D000523 5.3e-07 57.8 48 47.9
QL07p006007 Quercus lobata HOM05D000098 ORTHO05D000523 6.9e-07 57.4 47 51.1
Hma1.2p1_0279F.1_g112620 Hydrangea macrophylla HOM05D000098 ORTHO05D000523 1.2e-06 56.6 53 47.2
CiPaw.13G025500 Carya illinoinensis HOM05D000098 ORTHO05D000523 1.5e-06 56.2 58 46.6
RcHm_v2.0_Chr1g0348051 Rosa chinensis HOM05D000098 ORTHO05D000523 1.5e-06 56.2 54 44.4
Lj3g0023008 Lotus japonicus HOM05D000098 ORTHO05D000523 2.6e-06 55.5 52 53.8
Lalb_Chr07g0195361 Lupinus albus HOM05D000098 ORTHO05D000523 2.6e-06 55.5 60 41.7
TWI36G1629 Tripterygium wilfordii HOM05D000098 ORTHO05D000523 2.6e-06 55.5 51 49.0
GSVIVG01018292001 Vitis vinifera HOM05D000098 ORTHO05D000523 2.6e-06 55.5 50 46.0
Actinidia05913 Actinidia chinensis HOM05D000098 ORTHO05D000523 5.9e-06 54.3 62 46.8
PGR004G2548 Punica granatum HOM05D000098 ORTHO05D000523 5.9e-06 54.3 57 43.9
CARHR148400 Cardamine hirsuta HOM05D000098 ORTHO05D000523 7.7e-06 53.9 52 46.2


User provided reference genes

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