Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 1.1e-96 356.7 183 100.0
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 3.7e-73 278.5 178 77.5
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 1.4e-72 276.6 179 78.2
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 2.0e-71 272.7 180 75.6
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 2.0e-71 272.7 183 74.9
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 7.8e-71 270.8 177 76.3
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 7.8e-71 270.8 178 76.4
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 5.0e-70 268.1 177 75.7
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 5.0e-70 268.1 178 74.2
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 6.6e-70 267.7 177 76.3
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 3.3e-69 265.4 178 75.3
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 1.2e-68 263.5 184 73.9
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 3.6e-68 261.9 183 71.6
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 3.6e-68 261.9 174 74.1
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 6.2e-68 261.2 179 70.4
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 6.2e-68 261.2 178 73.0
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 2.3e-67 259.2 180 72.2
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 4.0e-67 258.5 173 74.6
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 5.2e-67 258.1 178 71.9
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 2.0e-66 256.1 175 72.6
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 3.4e-66 255.4 177 73.4
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 3.4e-66 255.4 183 71.0
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 1.3e-65 253.4 176 69.9
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 2.2e-65 252.7 184 69.6
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.7e-65 251.9 186 66.7
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 4.9e-65 251.5 171 72.5
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 4.9e-65 251.5 192 67.2
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 6.4e-65 251.1 177 71.2
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 6.4e-65 251.1 176 70.5
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 8.3e-65 250.8 173 73.4
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 1.1e-64 250.4 180 68.3
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 1.9e-64 249.6 178 69.7
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 2.4e-64 249.2 181 69.1
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 2.4e-64 249.2 178 69.7
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 5.4e-64 248.1 183 67.8
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 1.2e-63 246.9 174 70.7
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 2.0e-63 246.1 179 69.8
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 2.7e-63 245.7 174 71.8
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 4.6e-63 245.0 174 70.7
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 4.6e-63 245.0 176 69.3
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 4.6e-63 245.0 175 67.4
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 6.0e-63 244.6 179 66.5
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 7.8e-63 244.2 178 68.0
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 1.7e-62 243.0 175 68.0
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 3.0e-62 242.3 183 66.7
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 3.0e-62 242.3 186 67.2
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 5.0e-62 241.5 174 65.5
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 6.6e-62 241.1 180 67.8
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 6.6e-62 241.1 180 67.2
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 8.6e-62 240.7 175 67.4
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 1.1e-61 240.4 179 67.0
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 1.5e-61 240.0 176 67.0
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 1.5e-61 240.0 167 72.5
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 1.5e-61 240.0 176 67.6
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 4.3e-61 238.4 183 65.0
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 9.5e-61 237.3 182 65.9
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 1.6e-60 236.5 181 67.4
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 1.6e-60 236.5 181 67.4
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 2.1e-60 236.1 181 66.9
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 2.1e-60 236.1 181 66.9
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 2.1e-60 236.1 180 65.0
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 2.8e-60 235.7 170 68.8
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 2.8e-60 235.7 175 66.9
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 2.8e-60 235.7 180 65.6
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 1.4e-59 233.4 175 67.4
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 2.3e-59 232.6 180 65.6
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 1.2e-58 230.3 170 66.5
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 2.0e-58 229.6 173 67.6
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 7.5e-58 227.6 144 77.8
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 1.3e-57 226.9 177 64.4
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 3.7e-57 225.3 143 78.3
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 4.9e-57 224.9 146 76.0
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 1.9e-56 223.0 165 69.7
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 4.1e-56 221.9 177 62.7
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 7.1e-56 221.1 254 52.4
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 1.6e-55 219.9 170 63.5
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 2.1e-55 219.5 166 66.3
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 4.6e-55 218.4 177 62.7
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 7.8e-55 217.6 141 76.6
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 1.1e-53 213.8 140 77.1
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 2.5e-53 212.6 174 63.8
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 3.3e-53 212.2 166 66.9
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 7.3e-53 211.1 182 57.1
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 4.7e-52 208.4 149 71.8
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 8.1e-52 207.6 152 67.8
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 3.1e-51 205.7 208 53.4
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 7.6e-50 201.1 171 55.6
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 1.7e-49 199.9 140 67.9
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 6.4e-49 198.0 183 57.4
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 9.2e-48 194.1 168 59.5
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 6.6e-46 188.0 138 70.3
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 2.1e-44 183.0 177 54.8
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 2.8e-44 182.6 141 67.4
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 8.1e-44 181.0 118 74.6
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 3.1e-43 179.1 172 51.2
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 4.0e-43 178.7 195 50.8
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 9.0e-43 177.6 118 71.2
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.9e-40 169.9 172 48.3
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 3.2e-40 169.1 176 49.4
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 7.8e-39 164.5 123 67.5
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 1.5e-37 160.2 140 61.4
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 6.2e-36 154.8 141 53.2
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 1.6e-31 140.2 119 58.0
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 1.4e-27 127.1 160 38.1
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 1.7e-25 120.2 89 67.4
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 2.0e-18 96.7 81 64.2
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.1e-16 90.9 70 68.6
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 1.3e-12 77.4 51 76.5
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 1.2e-10 70.9 155 26.5
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.0e-09 67.8 42 71.4
Medtr1g051110 Medicago truncatula HOM05D001420 ORTHO05D009292 1.4e-08 63.9 84 48.8
Actinidia30872 Actinidia chinensis HOM05D005765 ORTHO05D002313 1.4e-06 57.4 104 39.4


User provided reference genes

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