Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc170.27 Carica papaya HOM05D007598 ORTHO05D009632 4.8e-39 164.1 86 100.0
Manes.17G070801 Manihot esculenta HOM05D007598 ORTHO05D009632 6.7e-25 117.1 92 69.6
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 3.1e-22 108.2 92 68.5
Carub.0004s1626 Capsella rubella HOM05D007598 ORTHO05D009632 1.2e-21 106.3 90 67.8
AT2G34585 Arabidopsis thaliana HOM05D007598 ORTHO05D009632 2.0e-21 105.5 88 69.3
BcaB06g28784 Brassica carinata HOM05D007598 ORTHO05D009632 2.7e-21 105.1 89 69.7
Cfa000936 Carpinus fangiana HOM05D007598 ORTHO05D009632 4.5e-21 104.4 89 69.7
AL4G30560 Arabidopsis lyrata HOM05D007598 ORTHO05D009632 5.9e-21 104.0 88 68.2
A04p26490 Brassica napus HOM05D007598 ORTHO05D009632 5.9e-21 104.0 90 67.8
C04p63910 Brassica napus HOM05D007598 ORTHO05D009632 5.9e-21 104.0 90 67.8
BolC4t27858H Brassica oleracea HOM05D007598 ORTHO05D009632 5.9e-21 104.0 90 67.8
BraA04t18153Z Brassica rapa HOM05D007598 ORTHO05D009632 5.9e-21 104.0 90 67.8
Thhalv10017600m.g Eutrema salsugineum HOM05D007598 ORTHO05D009632 5.9e-21 104.0 71 76.1
Sp4g16850 Schrenkiella parvula HOM05D007598 ORTHO05D009632 5.9e-21 104.0 89 69.7
Nn3g20182 Nelumbo nucifera HOM05D007598 ORTHO05D009632 1.7e-20 102.4 66 75.8
Thecc.06G149600 Theobroma cacao HOM05D007598 ORTHO05D009632 2.2e-20 102.1 86 72.1
Atru.chr10.1775 Acer truncatum HOM05D007598 ORTHO05D009632 5.0e-20 100.9 79 72.2
arahy.Tifrunner.gnm1.ann1.A3G0A3 Arachis hypogaea HOM05D007598 ORTHO05D009632 6.5e-20 100.5 86 64.0
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 6.5e-20 100.5 89 66.3
MD05G1283100 Malus domestica HOM05D007598 ORTHO05D009632 6.5e-20 100.5 61 77.0
Prupe.4G081500 Prunus persica HOM05D007598 ORTHO05D009632 6.5e-20 100.5 89 61.8
QL05p057697 Quercus lobata HOM05D007598 ORTHO05D009632 6.5e-20 100.5 67 79.1
THA.LOC104820651 Tarenaya hassleriana HOM05D007598 ORTHO05D009632 6.5e-20 100.5 90 65.6
CARHR128680 Cardamine hirsuta HOM05D007598 ORTHO05D009632 8.5e-20 100.1 89 62.9
arahy.Tifrunner.gnm1.ann1.KTXA2U Arachis hypogaea HOM05D007598 ORTHO05D009632 1.1e-19 99.8 86 64.0
Gohir.D10G042400 Gossypium hirsutum HOM05D007598 ORTHO05D009632 1.1e-19 99.8 65 78.5
AUR62030196 Chenopodium quinoa HOM05D007598 ORTHO05D009632 2.5e-19 98.6 75 65.3
Duzib235G0096 Durio zibethinus HOM05D007598 ORTHO05D009632 4.2e-19 97.8 70 75.7
CAN.G702.32 Capsicum annuum HOM05D007598 ORTHO05D009632 5.5e-19 97.4 73 65.8
Potri.011G084300 Populus trichocarpa HOM05D007598 ORTHO05D009632 5.5e-19 97.4 61 80.3
Rhsim02G0159000 Rhododendron simsii HOM05D007598 ORTHO05D009632 7.2e-19 97.1 87 55.2
Sed0007826 Sechium edule HOM05D007598 ORTHO05D009632 7.2e-19 97.1 86 66.3
Glyma.13G218700 Glycine max HOM05D007598 ORTHO05D009632 1.6e-18 95.9 64 73.4
Sabra11G0066800 Salix brachista HOM05D007598 ORTHO05D009632 1.6e-18 95.9 95 60.0
PGSC0003DMG400021093 Solanum tuberosum HOM05D007598 ORTHO05D009632 1.6e-18 95.9 68 70.6
AUR62002748 Chenopodium quinoa HOM05D007598 ORTHO05D009632 2.7e-18 95.1 75 62.7
Medtr2g019240 Medicago truncatula HOM05D007598 ORTHO05D009632 2.7e-18 95.1 61 72.1
Actinidia07703 Actinidia chinensis HOM05D007598 ORTHO05D009632 3.6e-18 94.7 79 62.0
PGR042G1521 Punica granatum HOM05D007598 ORTHO05D009632 3.6e-18 94.7 79 68.4
Actinidia39580 Actinidia chinensis HOM05D007598 ORTHO05D009632 4.7e-18 94.4 79 62.0
FvH4_3g05470 Fragaria vesca HOM05D007598 ORTHO05D009632 4.7e-18 94.4 64 75.0
FAN11G3574 Fragaria x ananassa HOM05D007598 ORTHO05D009632 4.7e-18 94.4 64 75.0
ClCG01G024670 Citrullus lanatus HOM05D007598 ORTHO05D009632 6.1e-18 94.0 88 62.5
Ciclev10017916m.g Citrus clementina HOM05D007598 ORTHO05D009632 6.1e-18 94.0 82 65.9
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 6.1e-18 94.0 74 66.2
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 6.1e-18 94.0 75 65.3
Psat1g188680 Pisum sativum HOM05D007598 ORTHO05D009632 6.1e-18 94.0 64 73.4
Solyc02g070470.1 Solanum lycopersicum HOM05D007598 ORTHO05D009632 6.1e-18 94.0 86 61.6
FAN16G2639 Fragaria x ananassa HOM05D007598 ORTHO05D009632 8.0e-18 93.6 64 75.0
FAN21G2813 Fragaria x ananassa HOM05D007598 ORTHO05D009632 8.0e-18 93.6 64 75.0
TWI53G0871 Tripterygium wilfordii HOM05D007598 ORTHO05D009632 1.0e-17 93.2 86 61.6
CsaV3_6G051780 Cucumis sativus L. HOM05D007598 ORTHO05D009632 1.4e-17 92.8 89 62.9
Sopen02g019560 Solanum pennellii HOM05D007598 ORTHO05D009632 1.4e-17 92.8 86 61.6
Cc00_g10360 Coffea canephora HOM05D007598 ORTHO05D009632 1.8e-17 92.4 86 61.6
DCAR_027909 Daucus carota HOM05D007598 ORTHO05D009632 2.3e-17 92.0 79 60.8
FAN25G0892 Fragaria x ananassa HOM05D007598 ORTHO05D009632 3.0e-17 91.7 64 73.4
SalBow8G5536 Salvia bowleyana HOM05D007598 ORTHO05D009632 3.0e-17 91.7 65 70.8
Phvul.006G165400 Phaseolus vulgaris HOM05D007598 ORTHO05D009632 4.0e-17 91.3 86 59.3
CSS0006536 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 6.8e-17 90.5 86 61.6
RcHm_v2.0_Chr5g0014281 Rosa chinensis HOM05D007598 ORTHO05D009632 6.8e-17 90.5 87 60.9
Sc05g0006160 Simmondsia chinensis HOM05D007598 ORTHO05D009632 6.8e-17 90.5 64 67.2
Aa31LG10G6810 Aethionema arabicum HOM05D007598 ORTHO05D009632 1.5e-16 89.4 90 57.8
Nitab4.5_0006887g0010 Nicotiana tabacum HOM05D007598 ORTHO05D009632 1.5e-16 89.4 73 64.4
CSS0035986 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 2.0e-16 89.0 86 62.8
Lalb_Chr20g0117881 Lupinus albus HOM05D007598 ORTHO05D009632 2.0e-16 89.0 79 63.3
CANSAT35G0825 Cannabis sativa HOM05D007598 ORTHO05D009632 2.6e-16 88.6 92 57.6
Glyma.15G093500 Glycine max HOM05D007598 ORTHO05D009632 2.6e-16 88.6 86 57.0
Aqoxy7G00246 Aquilegia oxysepala HOM05D007598 ORTHO05D009632 3.4e-16 88.2 68 66.2
Lj6g0001552 Lotus japonicus HOM05D007598 ORTHO05D009632 5.7e-16 87.4 86 59.3
Ca_00537_v3 Cicer arietinum L. HOM05D007598 ORTHO05D009632 9.8e-16 86.7 61 70.5
MD10G1261400 Malus domestica HOM05D007598 ORTHO05D009632 1.3e-15 86.3 95 54.7
Ah.14g086510 Amaranthus hybridus HOM05D007598 ORTHO05D009632 1.7e-15 85.9 66 63.6
EL10Ac8g19673 Beta vulgaris HOM05D007598 ORTHO05D009632 1.7e-15 85.9 68 66.2
unitig_749.g13736 Utricularia gibba HOM05D007598 ORTHO05D009632 1.7e-15 85.9 70 64.3
COL.COLO4_31062 Corchorus olitorius HOM05D007598 ORTHO05D009632 2.2e-15 85.5 46 87.0
Nitab4.5_0002744g0030 Nicotiana tabacum HOM05D007598 ORTHO05D009632 2.2e-15 85.5 62 69.4
Migut.M01992 Erythranthe guttata HOM05D007598 ORTHO05D009632 2.8e-15 85.1 60 70.0
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 2.8e-15 85.1 60 70.0
ATR1098G093 Amborella trichopoda HOM05D007598 ORTHO05D009632 3.7e-15 84.7 72 62.5
Migut.M00903 Erythranthe guttata HOM05D007598 ORTHO05D009632 6.3e-15 84.0 60 68.3
Rhsim13G0114100 Rhododendron simsii HOM05D007598 ORTHO05D009632 6.3e-15 84.0 80 56.2
PSO541G2526 Papaver somniferum HOM05D007598 ORTHO05D009632 2.4e-14 82.0 89 55.1
HanXRQChr15g0480881 Helianthus annuus HOM05D007598 ORTHO05D009632 3.1e-14 81.6 65 64.6
HanXRQChr04g0114301 Helianthus annuus HOM05D007598 ORTHO05D009632 4.1e-14 81.3 86 57.0
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 5.4e-14 80.9 65 63.1
Lsat_1_v5_gn_7_28481 Lactuca sativa HOM05D007598 ORTHO05D009632 1.6e-13 79.3 61 63.9
HPP92_000988 Vanilla planifolia HOM05D007598 ORTHO05D009632 3.5e-13 78.2 59 62.7
PGSC0003DMG400012092 Solanum tuberosum HOM05D007598 ORTHO05D009632 1.0e-12 76.6 48 72.9
ECA236G0778 Erigeron canadensis HOM05D007598 ORTHO05D009632 2.9e-12 75.1 46 71.7
SEGI_36626 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 2.9e-12 75.1 48 70.8
Os07g0154300 Oryza sativa ssp. japonica HOM05D007598 ORTHO05D009632 8.6e-12 73.6 60 58.3
Zm00001eb117510 Zea mays HOM05D007598 ORTHO05D009632 6.1e-10 67.4 86 45.3
Mapoly0055s0099 Marchantia polymorpha HOM05D007598 ORTHO05D009632 2.3e-09 65.5 48 60.4
Pp3c14_11250 Physcomitrium patens HOM05D007598 ORTHO05D009632 1.3e-07 59.7 67 43.3
Actinidia16706 Actinidia chinensis HOM05D000667 ORTHO05D004096 6.3e-07 57.4 55 54.5


User provided reference genes

Program Settings