Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 5.6e-159 564.3 304 100.0
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 1.2e-137 493.4 304 84.9
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 7.9e-137 490.7 304 84.5
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 3.9e-136 488.4 304 84.2
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.0e-131 473.8 304 81.2
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 3.8e-131 471.9 304 80.3
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 3.8e-131 471.9 303 82.2
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 3.8e-131 471.9 303 82.2
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 9.4e-130 467.2 305 81.6
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 1.2e-129 466.8 300 82.0
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 4.7e-129 464.9 297 83.2
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 8.0e-129 464.2 305 80.3
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 1.0e-128 463.8 305 81.0
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 2.3e-128 462.6 299 81.6
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 3.9e-128 461.8 305 81.0
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 5.2e-128 461.5 305 81.0
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 6.7e-128 461.1 304 80.6
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 8.8e-128 460.7 304 80.3
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 8.8e-128 460.7 301 80.7
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 1.1e-127 460.3 304 79.9
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 1.5e-127 459.9 304 80.6
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 2.0e-127 459.5 305 80.0
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 7.4e-127 457.6 304 79.9
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 6.3e-126 454.5 304 80.9
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 6.3e-126 454.5 304 79.9
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 6.3e-126 454.5 305 80.3
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.4e-125 453.4 304 79.9
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 1.8e-125 453.0 303 80.5
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.8e-125 453.0 297 81.8
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 7.0e-125 451.1 308 79.5
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 1.2e-124 450.3 310 79.0
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 1.2e-124 450.3 304 78.9
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 1.6e-124 449.9 309 79.0
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.6e-124 449.1 304 78.6
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 5.9e-124 448.0 304 79.6
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 7.7e-124 447.6 304 78.3
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 1.0e-123 447.2 290 81.4
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.3e-123 446.8 315 77.1
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 1.3e-123 446.8 304 78.6
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 1.3e-123 446.8 304 78.0
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 2.2e-123 446.0 305 78.7
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 5.0e-123 444.9 304 78.9
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 2.5e-122 442.6 308 77.6
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 7.2e-122 441.0 306 77.5
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 1.2e-121 440.3 304 78.0
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 6.1e-121 438.0 298 78.2
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 3.0e-120 435.6 305 77.4
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 5.2e-120 434.9 304 76.3
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 5.2e-120 434.9 304 76.3
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 6.8e-120 434.5 304 76.3
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 6.8e-120 434.5 304 76.3
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 8.8e-120 434.1 304 77.0
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.2e-119 433.7 304 74.7
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 9.7e-119 430.6 296 79.4
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 9.7e-119 430.6 304 74.3
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 1.3e-118 430.3 305 76.1
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 1.3e-118 430.3 304 74.7
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.3e-118 430.3 304 74.7
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 2.2e-118 429.5 304 75.3
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 2.8e-118 429.1 304 75.7
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 4.8e-118 428.3 304 74.3
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 4.8e-118 428.3 304 74.3
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 1.4e-117 426.8 305 75.7
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.4e-117 426.8 304 74.3
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 3.1e-117 425.6 304 75.3
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 4.1e-117 425.2 304 76.3
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 5.3e-117 424.9 300 75.0
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 1.2e-116 423.7 301 73.4
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 2.0e-116 422.9 296 77.7
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 4.5e-116 421.8 304 76.0
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 5.9e-116 421.4 304 75.3
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 7.7e-116 421.0 304 74.7
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 7.7e-116 421.0 304 73.4
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.0e-115 420.6 304 73.0
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 2.2e-115 419.5 295 76.9
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 2.2e-115 419.5 294 76.2
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 3.8e-115 418.7 293 77.8
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.2e-114 415.6 296 77.4
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 4.2e-114 415.2 304 72.0
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.2e-113 413.7 304 74.3
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 3.6e-113 412.1 304 73.4
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 8.0e-113 411.0 296 74.0
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.0e-112 410.6 304 71.4
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 3.0e-112 409.1 304 71.4
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 5.2e-112 408.3 281 76.9
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 2.0e-111 406.4 301 73.1
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 1.3e-110 403.7 304 69.1
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 8.3e-110 401.0 295 72.9
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 2.7e-108 396.0 304 72.0
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 2.9e-107 392.5 298 71.8
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.6e-107 391.0 281 76.9
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.1e-106 390.6 281 75.4
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 2.5e-106 389.4 290 72.8
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 1.8e-104 383.3 300 67.0
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 3.0e-104 382.5 297 69.0
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 6.8e-104 381.3 304 65.5
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 4.4e-103 378.6 305 66.2
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 5.7e-103 378.3 300 66.7
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.3e-102 374.8 281 74.4
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 2.7e-100 369.4 305 66.6
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 3.9e-99 365.5 295 65.1
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.9e-98 363.2 302 63.6
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 6.8e-96 354.8 290 65.5
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 2.6e-95 352.8 273 71.4
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 6.6e-91 338.2 281 64.1
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 8.0e-89 331.3 285 64.9
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 2.0e-87 326.6 230 77.0
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 2.1e-81 306.6 295 61.7
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 6.2e-81 305.1 195 82.6
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 9.2e-77 291.2 306 54.2
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.8e-73 279.6 198 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 7.3e-66 255.0 295 50.5
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 4.0e-64 249.2 163 79.1
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 2.0e-63 246.9 159 81.1
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 4.2e-61 239.2 291 50.2
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 1.5e-58 230.7 195 64.1
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 2.5e-58 229.9 300 49.3
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 4.0e-56 222.6 194 60.8
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 5.3e-56 222.2 338 43.5
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.2e-55 221.1 139 82.0
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 2.4e-48 196.8 240 54.2
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 6.5e-46 188.7 142 71.1
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 6.0e-44 182.2 211 51.7
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 1.3e-41 174.5 186 55.4
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 1.4e-40 171.0 115 78.3
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 1.4e-37 161.0 111 76.6
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.9e-34 150.6 97 79.4
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 2.2e-33 147.1 182 44.5
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.9e-31 139.0 97 78.4
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 2.9e-30 136.7 169 48.5
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 4.8e-25 119.4 86 73.3
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 9.4e-21 105.1 60 83.3
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 7.4e-18 95.5 292 30.1
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 7.4e-18 95.5 54 83.3
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 1.3e-17 94.7 303 29.4
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 3.7e-17 93.2 85 67.1
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.4e-16 90.5 176 36.9
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 2.4e-16 90.5 150 41.3
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 7.7e-15 85.5 46 84.8
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 4.1e-08 63.2 57 63.2


User provided reference genes

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