Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 8.9e-106 388.7 636 100.0
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 5.3e-74 283.1 634 90.1
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 8.7e-69 265.8 635 89.1
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 6.9e-66 256.1 633 83.1
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.2e-65 255.4 632 85.6
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 1.5e-65 255.0 252 73.4
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 1.5e-65 255.0 634 85.0
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 2.0e-65 254.6 635 89.0
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.4e-65 253.8 635 88.3
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 8.4e-64 249.2 632 85.1
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 1.9e-63 248.1 633 84.7
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 2.4e-63 247.7 633 84.2
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 8.7e-61 239.2 635 84.6
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 3.3e-60 237.3 635 83.8
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.1e-59 234.6 252 82.5
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 3.7e-59 233.8 635 83.3
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 3.7e-59 233.8 635 83.8
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 1.4e-58 231.9 633 83.6
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 3.1e-58 230.7 634 86.9
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 6.9e-58 229.6 635 86.0
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 6.9e-58 229.6 632 84.3
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.2e-57 228.8 627 85.0
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 2.6e-57 227.6 633 83.6
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 7.6e-57 226.1 635 85.8
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 3.8e-56 223.8 251 75.3
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 1.9e-55 221.5 635 86.0
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 1.9e-55 221.5 632 87.0
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.1e-54 218.0 251 79.3
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 2.1e-54 218.0 635 78.0
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 2.7e-54 217.6 634 86.8
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 1.5e-52 211.8 635 72.3
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 3.3e-52 210.7 632 85.9
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.6e-51 208.4 635 84.7
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 2.8e-51 207.6 635 84.4
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 4.8e-51 206.8 635 84.6
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 1.8e-50 204.9 254 64.2
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 1.8e-50 204.9 635 82.0
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 2.4e-50 204.5 632 82.4
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.3e-50 203.4 635 82.0
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.3e-50 203.4 635 81.9
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 2.6e-49 201.1 632 81.3
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 4.5e-49 200.3 124 76.6
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 7.6e-49 199.5 635 82.2
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 3.2e-47 194.1 251 76.5
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 4.2e-47 193.7 632 85.6
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 7.2e-47 193.0 635 81.4
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 9.3e-47 192.6 635 81.1
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 9.3e-47 192.6 632 85.8
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 3.6e-46 190.7 634 84.4
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 3.6e-46 190.7 632 85.0
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.8e-45 188.3 127 72.4
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 6.7e-45 186.4 127 73.2
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 1.1e-44 185.7 127 74.0
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 4.3e-44 183.7 127 70.9
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 7.4e-44 183.0 635 82.4
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 1.3e-43 182.2 124 74.2
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 6.3e-43 179.9 632 80.1
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 8.2e-43 179.5 636 79.6
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 8.2e-43 179.5 629 83.6
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 3.1e-42 177.6 636 70.1
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 4.1e-42 177.2 636 79.6
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 5.3e-42 176.8 632 83.4
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 9.1e-42 176.0 632 83.5
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 2.0e-41 174.9 632 80.1
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 2.0e-41 174.9 116 72.4
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 2.6e-41 174.5 632 80.1
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 2.6e-41 174.5 632 80.1
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 3.4e-41 174.1 124 66.1
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 5.9e-41 173.3 252 66.7
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 5.9e-41 173.3 635 80.2
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 5.9e-41 173.3 252 73.0
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 7.7e-41 172.9 635 83.6
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 1.7e-40 171.8 115 72.2
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 1.7e-40 171.8 635 83.8
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 2.2e-40 171.4 254 70.9
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 2.2e-40 171.4 124 67.7
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 1.1e-39 169.1 254 70.5
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 2.5e-39 167.9 632 79.7
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 5.5e-39 166.8 635 81.4
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 7.2e-39 166.4 113 71.7
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 6.1e-38 163.3 632 82.9
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 3.0e-37 161.0 97 79.4
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 6.7e-37 159.8 97 79.4
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 1.5e-36 158.7 635 80.9
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 4.4e-36 157.1 636 78.1
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 9.7e-36 156.0 636 78.6
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 2.2e-35 154.8 636 74.5
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 8.2e-35 152.9 124 65.3
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 1.8e-34 151.8 98 73.5
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 3.1e-34 151.0 96 76.0
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 5.3e-34 150.2 98 75.5
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 6.9e-34 149.8 98 74.5
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 9.1e-34 149.4 97 76.3
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 1.2e-33 149.1 97 74.2
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.2e-33 149.1 578 65.6
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 1.5e-33 148.7 97 75.3
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 1.5e-33 148.7 97 75.3
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 1.5e-33 148.7 97 75.3
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 2.0e-33 148.3 110 67.3
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 4.5e-33 147.1 95 76.8
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 7.7e-33 146.4 249 67.5
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 2.9e-32 144.4 567 85.2
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 6.5e-32 143.3 101 70.3
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 8.5e-32 142.9 110 64.5
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 1.4e-31 142.1 108 63.0
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 2.7e-30 137.9 124 58.9
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 6.1e-30 136.7 108 62.0
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.4e-29 135.6 108 76.9
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.3e-29 134.8 103 64.1
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 3.0e-29 134.4 252 65.1
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 5.2e-29 133.7 107 81.3
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 1.3e-27 129.0 77 80.5
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 1.8e-26 125.2 109 57.8
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 2.4e-26 124.8 103 57.3
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 2.0e-25 121.7 109 73.4
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 7.7e-25 119.8 109 57.8
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 7.7e-25 119.8 110 54.5
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 1.9e-23 115.2 108 70.4
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 2.3e-21 108.2 83 62.7
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 5.7e-20 103.6 75 65.3
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 2.2e-19 101.7 79 59.5
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 1.6e-17 95.5 88 76.1
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 3.5e-17 94.4 72 62.5
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 1.0e-16 92.8 63 68.3
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 8.8e-13 79.7 59 66.1
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 1.2e-12 79.3 82 51.2
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 7.5e-12 76.6 81 48.1
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 1.8e-10 72.0 43 72.1
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 7.0e-10 70.1 50 70.0
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 7.7e-09 66.6 116 37.9
BcaB03g13836 Brassica carinata HOM05D005337 ORTHO05D006567 1.9e-07 62.0 116 41.4
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 2.5e-07 61.6 120 32.5
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 2.5e-07 61.6 125 30.4
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 5.5e-07 60.5 119 31.9
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 1.2e-06 59.3 120 31.7
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 1.6e-06 58.9 120 31.7
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 3.6e-06 57.8 123 29.3
Hma1.2p1_0579F.1_g182710 Hydrangea macrophylla HOM05D005973 ORTHO05D007285 3.6e-06 57.8 121 30.6
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 3.6e-06 57.8 107 30.8
AagrBONN_evm.TU.Sc2ySwM_344.4462 Anthoceros agrestis HOM05D004079 ORTHO05D000355 6.1e-06 57.0 120 28.3
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 6.1e-06 57.0 121 32.2
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 6.1e-06 57.0 120 30.0
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 8.0e-06 56.6 120 30.8
TAR374G0752 Trochodendron aralioides HOM05D000424 ORTHO05D000355 8.0e-06 56.6 98 33.7


User provided reference genes

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