Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc17.19 Carica papaya HOM05D003313 ORTHO05D004217 2.0e-103 379.0 184 100.0
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 2.2e-89 332.4 171 90.6
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 2.9e-89 332.0 168 95.2
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 3.7e-89 331.6 168 94.0
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 1.1e-88 330.1 168 92.9
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 1.9e-88 329.3 168 92.9
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 7.0e-88 327.4 168 92.3
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 7.0e-88 327.4 168 92.9
CiPaw.01G000300 Carya illinoinensis HOM05D003313 ORTHO05D004217 1.2e-87 326.6 168 91.7
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 1.2e-87 326.6 167 92.8
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 1.2e-87 326.6 180 86.7
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 1.6e-87 326.2 168 93.5
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 2.0e-87 325.9 168 94.0
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 2.0e-87 325.9 168 94.0
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 2.7e-87 325.5 168 93.5
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 2.7e-87 325.5 168 91.7
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 2.7e-87 325.5 171 89.5
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 2.7e-87 325.5 171 89.5
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 2.7e-87 325.5 171 89.5
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 3.5e-87 325.1 168 91.7
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 4.6e-87 324.7 168 91.7
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 1.0e-86 323.6 168 90.5
Haze_14997 Corylus avellana HOM05D003313 ORTHO05D004217 1.0e-86 323.6 167 91.6
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 1.0e-86 323.6 168 90.5
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.0e-86 323.6 168 90.5
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 2.3e-86 322.4 168 91.7
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.0e-86 322.0 168 89.9
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 3.9e-86 321.6 168 91.1
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 3.9e-86 321.6 168 91.7
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 3.9e-86 321.6 168 91.1
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 5.0e-86 321.2 168 91.1
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 6.6e-86 320.9 168 91.1
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 6.6e-86 320.9 168 91.1
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 6.6e-86 320.9 180 83.9
DCAR_032259 Daucus carota HOM05D003313 ORTHO05D004217 6.6e-86 320.9 173 87.3
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 6.6e-86 320.9 168 91.1
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 6.6e-86 320.9 168 89.9
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 6.6e-86 320.9 168 89.9
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 6.6e-86 320.9 168 89.9
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 8.6e-86 320.5 168 91.1
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 8.6e-86 320.5 168 91.1
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 8.6e-86 320.5 168 91.1
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 8.6e-86 320.5 168 91.1
Hma1.2p1_0052F.1_g030180 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 8.6e-86 320.5 168 90.5
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 8.6e-86 320.5 168 89.9
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 8.6e-86 320.5 168 91.1
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 8.6e-86 320.5 168 91.1
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 1.5e-85 319.7 168 88.7
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.9e-85 319.3 168 89.9
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 2.5e-85 318.9 168 90.5
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 2.5e-85 318.9 168 90.5
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 2.5e-85 318.9 168 90.5
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.5e-85 318.9 168 90.5
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 2.5e-85 318.9 168 90.5
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 2.5e-85 318.9 168 89.3
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 3.3e-85 318.5 168 92.3
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 4.3e-85 318.2 168 88.7
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 4.3e-85 318.2 168 88.7
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 4.3e-85 318.2 168 91.1
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 4.3e-85 318.2 168 89.9
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 5.6e-85 317.8 189 81.5
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 7.3e-85 317.4 168 89.3
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 7.3e-85 317.4 168 89.3
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 7.3e-85 317.4 192 80.7
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.2e-84 316.6 168 88.7
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 1.2e-84 316.6 168 88.7
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 1.6e-84 316.2 168 88.7
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 1.6e-84 316.2 168 89.3
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 2.1e-84 315.8 169 89.3
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 3.6e-84 315.1 168 89.3
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 4.7e-84 314.7 169 88.2
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 1.1e-83 313.5 168 88.1
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.4e-83 313.2 168 88.1
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.4e-83 313.2 168 88.1
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 3.1e-83 312.0 168 88.1
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 4.0e-83 311.6 168 85.1
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 4.0e-83 311.6 168 86.9
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 5.2e-83 311.2 168 86.3
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 1.2e-82 310.1 168 88.7
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 1.2e-82 310.1 168 87.5
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 1.5e-82 309.7 168 88.7
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 2.6e-82 308.9 168 86.9
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 2.6e-82 308.9 164 89.6
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 5.8e-82 307.8 169 87.0
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 1.3e-81 306.6 167 88.6
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 1.3e-81 306.6 168 85.7
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 2.2e-81 305.8 167 88.0
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 3.7e-81 305.1 168 85.1
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 3.7e-81 305.1 168 86.3
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 3.7e-81 305.1 168 87.5
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 4.9e-81 304.7 167 88.0
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 6.4e-81 304.3 168 87.5
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 8.3e-81 303.9 191 76.4
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 1.9e-80 302.8 167 87.4
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 3.2e-80 302.0 168 85.7
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 4.1e-80 301.6 168 86.3
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 4.1e-80 301.6 168 85.7
TPR.G8375 Trifolium pratense HOM05D003313 ORTHO05D004217 5.4e-80 301.2 167 86.2
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 6.0e-79 297.7 168 84.5
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 7.3e-77 290.8 168 82.7
DCAR_029311 Daucus carota HOM05D003313 ORTHO05D004217 1.6e-76 289.7 194 75.8
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.1e-75 287.0 160 84.4
CDE09G1422 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 1.4e-75 286.6 168 80.4
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 4.0e-75 285.0 177 78.5
vmacro01642 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 5.2e-75 284.6 239 62.8
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 8.9e-75 283.9 167 80.2
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 2.9e-73 278.9 168 78.6
Gohir.D08G026350 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.9e-72 276.2 168 79.8
Gorai.004G022800 Gossypium raimondii HOM05D003313 ORTHO05D004217 1.9e-72 276.2 168 79.8
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.2e-71 273.5 160 81.2
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 1.5e-69 266.5 220 63.6
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 2.4e-67 259.2 193 67.4
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 1.2e-63 246.9 158 76.6
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 3.9e-62 241.9 169 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 1.5e-58 229.9 168 62.5
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 2.9e-57 225.7 169 65.7
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 4.9e-49 198.4 171 57.3
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 5.4e-48 194.9 189 51.9
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 3.0e-46 189.1 112 83.0
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 2.4e-43 179.5 92 92.4
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 9.3e-40 167.5 85 92.9
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.2e-39 167.2 85 92.9
SHI06534 Sapria himalayana HOM05D003313 ORTHO05D004217 1.5e-37 160.2 100 75.0
Nitab4.5_0004668g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 2.5e-37 159.5 89 80.9
MD10G1149000 Malus domestica HOM05D003313 ORTHO05D004217 1.9e-32 143.3 72 93.1
HanXRQChr14g0448821 Helianthus annuus HOM05D003313 ORTHO05D004217 1.2e-31 140.6 75 88.0
SHI06540 Sapria himalayana HOM05D003313 ORTHO05D004217 1.1e-29 134.0 78 79.5
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 1.9e-24 116.7 54 94.4
Cre12.g535350 Chlamydomonas reinhardtii HOM05D003313 ORTHO05D004217 1.8e-19 100.1 182 33.5
PRCOL_00001888 Prasinoderma coloniale HOM05D003313 ORTHO05D004217 4.2e-16 89.0 171 29.8
SMO353G0154 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 3.8e-09 65.9 67 53.7
SMO334G0084 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 7.2e-08 61.6 95 41.1


User provided reference genes

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