Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 0.0e+00 1535.4 759 100.0
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 7.3e-131 472.2 781 40.7
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 8.4e-119 432.2 776 37.4
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 1.4e-118 431.4 776 38.5
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.6e-117 427.9 771 40.3
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 7.3e-115 419.1 776 37.9
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 7.3e-115 419.1 781 40.2
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.6e-114 417.9 777 38.4
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 1.6e-114 417.9 777 38.2
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 2.8e-114 417.2 770 40.5
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 6.9e-113 412.5 779 38.3
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 9.0e-113 412.1 780 37.1
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 8.1e-106 389.0 779 36.8
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 3.1e-105 387.1 777 36.9
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.1e-97 362.1 803 35.2
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 2.6e-96 357.5 823 32.6
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.2e-93 348.6 792 34.3
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 3.0e-92 344.0 777 34.9
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 5.1e-92 343.2 764 37.3
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 4.3e-91 340.1 756 35.8
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 7.4e-91 339.3 780 35.8
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 1.6e-90 338.2 771 34.5
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 4.8e-90 336.7 761 36.1
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 8.2e-90 335.9 804 34.3
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 3.1e-89 334.0 787 33.7
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 3.8e-87 327.0 419 45.3
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 5.5e-86 323.2 798 33.8
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 9.3e-86 322.4 786 33.8
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 3.9e-84 317.0 821 32.9
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 5.1e-84 316.6 784 35.5
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 5.1e-84 316.6 772 34.3
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 3.7e-82 310.5 741 32.9
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 4.1e-81 307.0 767 33.1
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 5.5e-78 296.6 787 34.9
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 1.4e-76 292.0 778 33.5
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 3.1e-73 280.8 773 32.3
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 5.3e-73 280.0 786 32.8
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 9.1e-73 279.3 560 36.4
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 1.5e-72 278.5 786 32.7
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 5.9e-72 276.6 773 32.9
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 6.5e-71 273.1 581 35.3
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.7e-69 267.7 777 33.8
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 1.0e-68 265.8 776 31.3
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 1.4e-68 265.4 769 30.8
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.0e-68 264.2 778 32.9
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 7.4e-67 259.6 781 33.2
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 7.4e-67 259.6 761 33.6
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.2e-66 258.1 825 28.4
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.2e-64 252.3 488 37.5
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 3.0e-60 237.7 764 30.0
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 6.7e-60 236.5 513 33.5
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 4.4e-59 233.8 519 37.0
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.8e-57 228.4 790 30.1
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 3.1e-57 227.6 789 29.9
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 2.9e-55 221.1 793 29.6
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.1e-54 219.2 521 34.7
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 1.5e-54 218.8 572 31.8
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 1.6e-53 215.3 778 28.8
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 2.1e-53 214.9 784 30.4
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 4.7e-53 213.8 775 29.3
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 4.7e-53 213.8 775 29.4
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 2.3e-52 211.5 774 29.2
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 8.8e-52 209.5 783 29.0
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 5.7e-51 206.8 825 27.3
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.7e-50 205.3 537 31.5
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 2.4e-49 201.4 769 27.7
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 9.1e-49 199.5 569 31.8
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 1.2e-48 199.1 754 28.5
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.0e-48 198.4 583 31.9
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 3.5e-48 197.6 423 36.9
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.7e-47 195.3 419 34.4
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 3.8e-47 194.1 794 27.6
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 1.1e-46 192.6 582 31.3
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 1.9e-46 191.8 512 30.3
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 3.6e-45 187.6 406 35.5
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 4.0e-44 184.1 481 32.2
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 2.0e-43 181.8 431 34.6
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 3.4e-43 181.0 431 34.6
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 7.0e-41 173.3 401 35.4
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 4.5e-40 170.6 527 29.4
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 2.3e-39 168.3 420 33.6
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 3.3e-38 164.5 491 30.8
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 2.1e-37 161.8 379 35.6
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 2.1e-37 161.8 437 32.3
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 6.1e-37 160.2 386 33.9
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 8.0e-37 159.8 384 32.8
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.0e-35 155.2 536 27.6
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 3.4e-35 154.5 419 32.5
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 5.4e-33 147.1 582 28.4
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 3.5e-32 144.4 365 33.2
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 5.9e-32 143.7 390 32.3
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 7.8e-32 143.3 387 33.3
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.0e-31 142.9 464 30.8
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 1.7e-31 142.1 257 40.5
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 3.9e-31 141.0 468 29.9
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 6.6e-31 140.2 334 32.9
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 1.5e-30 139.0 369 33.1
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 1.9e-30 138.7 417 30.7
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 7.3e-30 136.7 369 33.3
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 7.3e-30 136.7 367 32.2
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 7.3e-30 136.7 369 33.3
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 7.3e-30 136.7 369 33.3
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 4.0e-28 131.0 367 33.0
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 4.0e-28 131.0 367 33.0
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 4.0e-28 131.0 367 31.1
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 1.2e-27 129.4 367 31.6
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 1.5e-27 129.0 400 30.0
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.4e-27 127.5 209 35.9
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 7.5e-27 126.7 209 36.4
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.3e-26 125.9 555 26.3
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 2.9e-26 124.8 365 32.3
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 2.9e-26 124.8 365 32.3
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 5.4e-25 120.6 214 36.0
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 5.4e-25 120.6 245 33.9
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 7.0e-25 120.2 234 33.8
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 1.6e-24 119.0 562 26.7
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.1e-21 108.6 206 34.5
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 3.6e-21 107.8 226 34.5
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 4.7e-21 107.5 280 34.3
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 4.0e-20 104.4 424 25.2
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 4.0e-20 104.4 362 29.3
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.7e-16 91.7 228 29.4
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 4.6e-16 90.9 158 36.1
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 7.8e-16 90.1 101 42.6
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 4.7e-13 80.9 240 31.7
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 8.1e-13 80.1 353 24.9
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 4.0e-12 77.8 216 30.1
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 4.0e-12 77.8 212 30.7
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 7.6e-11 73.6 450 24.0
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 6.4e-10 70.5 244 28.3
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 6.4e-10 70.5 355 24.8
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 6.4e-10 70.5 355 24.8
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 9.2e-09 66.6 189 31.2
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 4.6e-08 64.3 77 46.8
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 8.6e-07 60.1 71 38.0
VMungo0251G2908 Vigna mungo HOM05D007001 ORTHO05D035952 5.6e-06 57.4 150 29.3
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 7.3e-06 57.0 216 23.6


User provided reference genes

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