Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc169.51 Carica papaya HOM05D003550 ORTHO05D004336 2.9e-190 668.3 319 100.0
Potri.001G029600 Populus trichocarpa HOM05D003550 ORTHO05D004336 6.6e-126 454.5 224 94.2
Haze_03007 Corylus avellana HOM05D003550 ORTHO05D004336 9.6e-125 450.7 224 92.4
Sabra01G0021200 Salix brachista HOM05D003550 ORTHO05D004336 1.6e-124 449.9 224 93.3
Ciclev10000023m.g Citrus clementina HOM05D003550 ORTHO05D004336 1.4e-123 446.8 224 92.0
Dinv32016 Davidia involucrata HOM05D003550 ORTHO05D004336 4.0e-123 445.3 224 91.1
MD07G1048200 Malus domestica HOM05D003550 ORTHO05D004336 4.0e-123 445.3 224 92.0
Manes.04G157700 Manihot esculenta HOM05D003550 ORTHO05D004336 5.2e-123 444.9 224 92.4
Atru.chr12.1267 Acer truncatum HOM05D003550 ORTHO05D004336 1.5e-122 443.4 224 89.7
Duzib106G1351 Durio zibethinus HOM05D003550 ORTHO05D004336 1.5e-122 443.4 224 90.2
RcHm_v2.0_Chr1g0325801 Rosa chinensis HOM05D003550 ORTHO05D004336 1.5e-122 443.4 227 90.7
CSS0018240 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 2.6e-122 442.6 224 89.7
CSS0021926 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 2.6e-122 442.6 224 89.7
QL04p017759 Quercus lobata HOM05D003550 ORTHO05D004336 2.6e-122 442.6 224 91.1
CiPaw.14G008600 Carya illinoinensis HOM05D003550 ORTHO05D004336 3.4e-122 442.2 224 92.0
Dinv44694 Davidia involucrata HOM05D003550 ORTHO05D004336 4.4e-122 441.8 224 90.6
GSVIVG01036651001 Vitis vinifera HOM05D003550 ORTHO05D004336 4.4e-122 441.8 225 88.4
Thecc.10G149700 Theobroma cacao HOM05D003550 ORTHO05D004336 1.3e-121 440.3 224 88.8
Duzib114G0877 Durio zibethinus HOM05D003550 ORTHO05D004336 2.2e-121 439.5 224 88.8
FvH4_7g03470 Fragaria vesca HOM05D003550 ORTHO05D004336 2.2e-121 439.5 227 89.9
FAN06G0346 Fragaria x ananassa HOM05D003550 ORTHO05D004336 2.2e-121 439.5 227 89.9
PSO339G1124 Papaver somniferum HOM05D003550 ORTHO05D004336 2.2e-121 439.5 224 89.7
Prupe.2G040800 Prunus persica HOM05D003550 ORTHO05D004336 2.9e-121 439.1 224 90.6
Actinidia10150 Actinidia chinensis HOM05D003550 ORTHO05D004336 8.4e-121 437.6 224 89.3
Nn7g36747 Nelumbo nucifera HOM05D003550 ORTHO05D004336 8.4e-121 437.6 224 88.8
Gohir.A10G186900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.1e-120 437.2 224 89.7
PSO384G0047 Papaver somniferum HOM05D003550 ORTHO05D004336 1.1e-120 437.2 224 89.3
arahy.Tifrunner.gnm1.ann1.LJ5CCV Arachis hypogaea HOM05D003550 ORTHO05D004336 3.2e-120 435.6 224 89.3
Gorai.012G018700 Gossypium raimondii HOM05D003550 ORTHO05D004336 3.2e-120 435.6 226 88.1
CANSAT56G1944 Cannabis sativa HOM05D003550 ORTHO05D004336 4.2e-120 435.3 224 90.6
arahy.Tifrunner.gnm1.ann1.VF4M4N Arachis hypogaea HOM05D003550 ORTHO05D004336 5.4e-120 434.9 224 89.3
Cc00_g09560 Coffea canephora HOM05D003550 ORTHO05D004336 5.4e-120 434.9 224 88.8
TAR623G1672 Trochodendron aralioides HOM05D003550 ORTHO05D004336 9.3e-120 434.1 223 89.2
Gohir.D04G016100 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.2e-119 433.7 226 87.6
Gorai.011G216900 Gossypium raimondii HOM05D003550 ORTHO05D004336 1.2e-119 433.7 224 89.3
TAR369G1080 Trochodendron aralioides HOM05D003550 ORTHO05D004336 2.1e-119 433.0 233 86.7
Actinidia06226 Actinidia chinensis HOM05D003550 ORTHO05D004336 2.7e-119 432.6 224 87.9
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 2.7e-119 432.6 224 87.9
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 2.7e-119 432.6 224 87.9
Glyma.11G157400 Glycine max HOM05D003550 ORTHO05D004336 3.5e-119 432.2 224 89.3
Gohir.D10G193900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 3.5e-119 432.2 224 88.8
Gohir.A05G399700 Gossypium hirsutum HOM05D003550 ORTHO05D004336 4.6e-119 431.8 226 87.6
Lsat_1_v5_gn_7_31581 Lactuca sativa HOM05D003550 ORTHO05D004336 6.0e-119 431.4 224 87.9
Psat5g221640 Pisum sativum HOM05D003550 ORTHO05D004336 6.0e-119 431.4 224 88.8
MD02G1282100 Malus domestica HOM05D003550 ORTHO05D004336 1.0e-118 430.6 224 89.3
FAN03G0411 Fragaria x ananassa HOM05D003550 ORTHO05D004336 2.3e-118 429.5 239 84.9
TPR.G1404 Trifolium pratense HOM05D003550 ORTHO05D004336 2.3e-118 429.5 224 88.4
Lj3g0007376 Lotus japonicus HOM05D003550 ORTHO05D004336 3.0e-118 429.1 224 88.8
Ca_12963_v3 Cicer arietinum L. HOM05D003550 ORTHO05D004336 3.9e-118 428.7 224 88.4
HanXRQChr04g0112901 Helianthus annuus HOM05D003550 ORTHO05D004336 8.7e-118 427.6 224 87.5
ECA236G1978 Erigeron canadensis HOM05D003550 ORTHO05D004336 1.1e-117 427.2 224 86.6
Aqoxy1G00373 Aquilegia oxysepala HOM05D003550 ORTHO05D004336 1.5e-117 426.8 224 86.6
Sed0009251 Sechium edule HOM05D003550 ORTHO05D004336 1.9e-117 426.4 224 86.2
Hund13381 Selenicereus undatus HOM05D003550 ORTHO05D004336 1.9e-117 426.4 224 86.2
FAN01G2608 Fragaria x ananassa HOM05D003550 ORTHO05D004336 2.5e-117 426.0 237 85.2
Rhsim07G0068000 Rhododendron simsii HOM05D003550 ORTHO05D004336 2.5e-117 426.0 227 85.9
Lalb_Chr01g0015821 Lupinus albus HOM05D003550 ORTHO05D004336 4.3e-117 425.2 224 88.4
THA.LOC104819140 Tarenaya hassleriana HOM05D003550 ORTHO05D004336 7.3e-117 424.5 224 85.7
ATR0782G088 Amborella trichopoda HOM05D003550 ORTHO05D004336 2.1e-116 422.9 224 87.5
Thhalv10012422m.g Eutrema salsugineum HOM05D003550 ORTHO05D004336 2.1e-116 422.9 224 84.8
AL6G24150 Arabidopsis lyrata HOM05D003550 ORTHO05D004336 2.8e-116 422.5 224 84.8
AT5G13530 Arabidopsis thaliana HOM05D003550 ORTHO05D004336 2.8e-116 422.5 224 84.8
DCAR_001913 Daucus carota HOM05D003550 ORTHO05D004336 2.8e-116 422.5 227 86.8
FAN10G1007 Fragaria x ananassa HOM05D003550 ORTHO05D004336 2.8e-116 422.5 237 84.8
Sp6g30490 Schrenkiella parvula HOM05D003550 ORTHO05D004336 2.8e-116 422.5 224 84.8
vmacro13761 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 6.2e-116 421.4 243 81.5
BcaB01g05352 Brassica carinata HOM05D003550 ORTHO05D004336 8.1e-116 421.0 224 84.4
A03p06030 Brassica napus HOM05D003550 ORTHO05D004336 1.1e-115 420.6 224 84.4
Carub.0006s1169 Capsella rubella HOM05D003550 ORTHO05D004336 1.1e-115 420.6 224 84.4
Phvul.005G025000 Phaseolus vulgaris HOM05D003550 ORTHO05D004336 1.8e-115 419.9 223 87.4
EL10Ac2g02773 Beta vulgaris HOM05D003550 ORTHO05D004336 4.0e-115 418.7 222 85.1
C03p07080 Brassica napus HOM05D003550 ORTHO05D004336 5.3e-115 418.3 224 83.9
BolC3t13205H Brassica oleracea HOM05D003550 ORTHO05D004336 5.3e-115 418.3 224 83.9
CARHR199910 Cardamine hirsuta HOM05D003550 ORTHO05D004336 1.2e-114 417.2 229 83.0
AUR62026885 Chenopodium quinoa HOM05D003550 ORTHO05D004336 1.2e-114 417.2 230 82.6
AUR62032634 Chenopodium quinoa HOM05D003550 ORTHO05D004336 2.0e-114 416.4 227 84.1
BraA03t09941Z Brassica rapa HOM05D003550 ORTHO05D004336 2.6e-114 416.0 222 84.2
Sc10g0004490 Simmondsia chinensis HOM05D003550 ORTHO05D004336 2.6e-114 416.0 227 84.1
TWI38G1858 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 2.6e-114 416.0 225 84.9
Nitab4.5_0005808g0030 Nicotiana tabacum HOM05D003550 ORTHO05D004336 4.4e-114 415.2 227 81.1
Oeu013090.1 Olea europaea HOM05D003550 ORTHO05D004336 5.8e-114 414.8 224 84.8
Migut.N01852 Erythranthe guttata HOM05D003550 ORTHO05D004336 9.9e-114 414.1 224 85.3
Nitab4.5_0003481g0090 Nicotiana tabacum HOM05D003550 ORTHO05D004336 9.9e-114 414.1 227 80.6
Eucgr.G03219 Eucalyptus grandis HOM05D003550 ORTHO05D004336 2.2e-113 412.9 224 85.7
PGR031G1017 Punica granatum HOM05D003550 ORTHO05D004336 2.2e-113 412.9 226 84.5
TWI15G0170 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 2.2e-113 412.9 224 84.8
SEGI_17265 Sequoiadendron giganteum HOM05D003550 ORTHO05D004336 2.9e-113 412.5 227 82.4
Lalb_Chr04g0264171 Lupinus albus HOM05D003550 ORTHO05D004336 6.4e-113 411.4 224 85.3
CDE02G1072 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 8.4e-113 411.0 224 83.5
Peaxi162Scf00082g00122 Petunia axillaris HOM05D003550 ORTHO05D004336 8.4e-113 411.0 224 80.4
Ah.10g030140 Amaranthus hybridus HOM05D003550 ORTHO05D004336 1.9e-112 409.8 224 82.6
Aa31LG11G7760 Aethionema arabicum HOM05D003550 ORTHO05D004336 2.4e-112 409.5 222 83.3
CDE09G0620 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 2.4e-112 409.5 224 83.0
MSTRG.28033 Avicennia marina HOM05D003550 ORTHO05D004336 3.2e-112 409.1 224 83.9
CAN.G1045.18 Capsicum annuum HOM05D003550 ORTHO05D004336 3.5e-111 405.6 230 80.0
Solyc01g096490.3 Solanum lycopersicum HOM05D003550 ORTHO05D004336 3.5e-111 405.6 236 78.4
Sopen01g040220 Solanum pennellii HOM05D003550 ORTHO05D004336 3.5e-111 405.6 236 78.4
MSTRG.5071 Avicennia marina HOM05D003550 ORTHO05D004336 7.3e-109 397.9 227 79.7
AagrBONN_evm.TU.Sc2ySwM_344.1602 Anthoceros agrestis HOM05D003550 ORTHO05D004336 2.1e-108 396.4 227 77.5
Mapoly0002s0111 Marchantia polymorpha HOM05D003550 ORTHO05D004336 3.1e-107 392.5 227 77.5
unitig_0.g2291 Utricularia gibba HOM05D003550 ORTHO05D004336 9.0e-107 391.0 227 78.9
Glyma.13G195200 Glycine max HOM05D003550 ORTHO05D004336 1.5e-106 390.2 224 80.8
Medtr3g014090 Medicago truncatula HOM05D003550 ORTHO05D004336 1.5e-106 390.2 227 79.7
Cfa010939 Carpinus fangiana HOM05D003550 ORTHO05D004336 2.0e-106 389.8 255 74.1
SGA_v2.0_scaffold232G43498 Striga asiatica HOM05D003550 ORTHO05D004336 2.0e-106 389.8 236 78.0
Zm00001eb350870 Zea mays HOM05D003550 ORTHO05D004336 6.0e-103 378.3 224 76.8
Zm00001eb287260 Zea mays HOM05D003550 ORTHO05D004336 3.0e-102 375.9 224 76.3
CSS0027876 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 2.8e-100 369.4 224 75.9
HPP92_001023 Vanilla planifolia HOM05D003550 ORTHO05D004336 3.1e-99 365.9 224 74.1
Actinidia06972 Actinidia chinensis HOM05D003550 ORTHO05D004336 1.2e-98 364.0 223 74.0
Haze_23247 Corylus avellana HOM05D003550 ORTHO05D004336 2.2e-97 359.8 224 72.3
vmacro04042 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 6.5e-97 358.2 244 68.9
Actinidia24461 Actinidia chinensis HOM05D003550 ORTHO05D004336 1.4e-96 357.1 224 74.1
CiPaw.14G112000 Carya illinoinensis HOM05D003550 ORTHO05D004336 3.2e-96 355.9 225 73.3
QL01p016949 Quercus lobata HOM05D003550 ORTHO05D004336 3.3e-93 345.9 226 70.8
MELO3C014558.2 Cucumis melo HOM05D003550 ORTHO05D004336 2.4e-91 339.7 237 66.7
Sed0016122 Sechium edule HOM05D003550 ORTHO05D004336 2.0e-90 336.7 237 66.7
CsaV3_6G038940 Cucumis sativus L. HOM05D003550 ORTHO05D004336 1.7e-89 333.6 237 66.2
Cfa009883 Carpinus fangiana HOM05D003550 ORTHO05D004336 9.0e-83 311.2 240 60.0
Rhsim13G0208400 Rhododendron simsii HOM05D003550 ORTHO05D004336 9.0e-83 311.2 234 63.2
Sabra16G0169200 Salix brachista HOM05D003550 ORTHO05D004336 1.2e-82 310.8 224 65.2
CBR_g16035 Chara braunii HOM05D003550 ORTHO05D004336 1.1e-80 304.3 226 59.3
Potri.001G274900 Populus trichocarpa HOM05D003550 ORTHO05D004336 3.6e-79 299.3 224 63.4
HPP92_003596 Vanilla planifolia HOM05D003550 ORTHO05D004336 1.7e-76 290.4 224 63.4
Lj9C657T7 Lonicera japonica HOM05D003550 ORTHO05D004336 1.6e-58 230.7 112 92.0
Sabra16G0169400 Salix brachista HOM05D003550 ORTHO05D004336 2.7e-58 229.9 174 62.6
Glyma.15G233567 Glycine max HOM05D003550 ORTHO05D004336 2.2e-57 226.9 226 53.5
SHI04010 Sapria himalayana HOM05D003550 ORTHO05D004336 2.3e-54 216.9 128 76.6
Atru.chr12.1265 Acer truncatum HOM05D003550 ORTHO05D004336 1.4e-51 207.6 122 80.3
Glyma.04G134700 Glycine max HOM05D003550 ORTHO05D004336 2.4e-51 206.8 113 85.0
Lj9C657G2 Lonicera japonica HOM05D003550 ORTHO05D004336 2.5e-48 196.8 107 86.0
VMungo1080G0047 Vigna mungo HOM05D003550 ORTHO05D004336 1.2e-47 194.5 112 81.2
BcaB01g03097 Brassica carinata HOM05D003550 ORTHO05D004336 1.9e-40 170.6 130 61.5
Glyma.15G233001 Glycine max HOM05D003550 ORTHO05D004336 1.9e-40 170.6 115 69.6
SMO271G0120 Selaginella moellendorffii HOM05D003550 ORTHO05D004336 6.8e-38 162.2 204 41.2
arahy.Tifrunner.gnm1.ann1.S4G3U6 Arachis hypogaea HOM05D003550 ORTHO05D004336 1.2e-37 161.4 147 57.1
Glyma.15G233600 Glycine max HOM05D003550 ORTHO05D004336 1.2e-37 161.4 90 81.1
arahy.Tifrunner.gnm1.ann1.2K1FXD Arachis hypogaea HOM05D003550 ORTHO05D004336 1.2e-34 151.4 99 71.7
BcaB01g02474 Brassica carinata HOM05D003550 ORTHO05D004336 1.2e-34 151.4 197 41.1
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 1.0e-33 148.3 80 81.2
SHI04011 Sapria himalayana HOM05D003550 ORTHO05D004336 3.1e-30 136.7 117 58.1
CBR_g21745 Chara braunii HOM05D003550 ORTHO05D004336 6.8e-30 135.6 194 37.1
HanXRQChr15g0481011 Helianthus annuus HOM05D003550 ORTHO05D004336 1.2e-29 134.8 71 84.5
HanXRQChr15g0481021 Helianthus annuus HOM05D003550 ORTHO05D004336 1.1e-27 128.3 81 71.6
COL.COLO4_20694 Corchorus olitorius HOM05D003550 ORTHO05D004336 2.4e-27 127.1 178 34.8
BolC2t06569H Brassica oleracea HOM05D003550 ORTHO05D004336 2.0e-26 124.0 115 57.4
CBR_g22351 Chara braunii HOM05D003550 ORTHO05D004039 7.8e-26 122.1 204 33.8
BolC2t06568H Brassica oleracea HOM05D003550 ORTHO05D004336 1.4e-22 111.3 168 33.9
arahy.Tifrunner.gnm1.ann1.ZL62QC Arachis hypogaea HOM05D003550 ORTHO05D004336 2.6e-21 107.1 64 75.0
CBR_g22349 Chara braunii HOM05D003550 ORTHO05D004336 6.4e-20 102.4 197 29.9
BcaC06g34238 Brassica carinata HOM05D001392 ORTHO05D032327 1.4e-19 101.3 138 44.2
arahy.Tifrunner.gnm1.ann1.SS96TB Arachis hypogaea HOM05D003550 ORTHO05D004336 1.9e-19 100.9 115 52.2
C04p41180 Brassica napus HOM05D003550 ORTHO05D032327 7.8e-18 95.5 111 47.7
BolC4t25700H Brassica oleracea HOM05D003550 ORTHO05D032327 7.8e-18 95.5 111 47.7
Pp3c19_20230 Physcomitrium patens HOM05D002526 ORTHO05D004039 7.8e-18 95.5 197 33.5
CBR_g26207 Chara braunii HOM05D003550 ORTHO05D004336 1.7e-17 94.4 162 36.4
AagrBONN_evm.TU.Sc2ySwM_117.2834 Anthoceros agrestis HOM05D002526 ORTHO05D004039 3.0e-17 93.6 172 33.1
BcaC02g08867 Brassica carinata HOM05D000052 ORTHO05D000046 1.1e-16 91.7 56 73.2
BolC9t58620H Brassica oleracea HOM05D003550 ORTHO05D004336 1.1e-14 85.1 50 80.0
C03p76060 Brassica napus HOM05D000516 ORTHO05D000409 5.2e-14 82.8 83 51.8
arahy.Tifrunner.gnm1.ann1.8B1C3X Arachis hypogaea HOM05D003550 ORTHO05D004336 4.4e-13 79.7 44 81.8
SMO143G0194 Selaginella moellendorffii HOM05D002526 ORTHO05D004039 9.9e-13 78.6 171 31.0
AUR62044058 Chenopodium quinoa HOM05D003550 ORTHO05D004336 1.9e-11 74.3 41 78.0
Mapoly0051s0037 Marchantia polymorpha HOM05D002526 ORTHO05D004039 5.1e-09 66.2 225 24.9
SMO308G0074 Selaginella moellendorffii HOM05D003550 ORTHO05D004336 3.3e-08 63.5 70 51.4
Os05g0392000 Oryza sativa ssp. japonica HOM05D003550 ORTHO05D004336 6.2e-07 59.3 122 34.4
CiPaw.08G010500 Carya illinoinensis HOM05D002526 ORTHO05D004039 6.8e-06 55.8 217 24.0
Nitab4.5_0002202g0050 Nicotiana tabacum HOM05D000238 ORTHO05D004039 6.8e-06 55.8 130 33.1
Phvul.009G092300 Phaseolus vulgaris HOM05D002526 ORTHO05D004039 6.8e-06 55.8 121 29.8


User provided reference genes

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