Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc169.14 Carica papaya HOM05D007348 ORTHO05D009257 8.1e-67 256.9 127 100.0
Manes.08G081300 Manihot esculenta HOM05D007348 ORTHO05D009257 5.8e-41 171.0 121 76.0
TWI77G0545 Tripterygium wilfordii HOM05D007348 ORTHO05D009257 3.8e-40 168.3 130 66.2
Potri.006G087701 Populus trichocarpa HOM05D007348 ORTHO05D009257 4.9e-40 167.9 98 83.7
GSVIVG01034135001 Vitis vinifera HOM05D007348 ORTHO05D009257 1.9e-39 166.0 127 65.4
MD12G1144800 Malus domestica HOM05D007348 ORTHO05D009257 4.2e-39 164.9 126 69.0
Sabra06G0067000 Salix brachista HOM05D007348 ORTHO05D009257 4.2e-39 164.9 100 82.0
QL07p048913 Quercus lobata HOM05D007348 ORTHO05D009257 7.1e-39 164.1 137 65.0
COL.COLO4_14769 Corchorus olitorius HOM05D007348 ORTHO05D009257 9.3e-39 163.7 139 66.2
Ciclev10013090m.g Citrus clementina HOM05D007348 ORTHO05D009257 1.6e-38 162.9 103 79.6
MD04G1131700 Malus domestica HOM05D007348 ORTHO05D009257 3.5e-38 161.8 126 68.3
Dinv37151 Davidia involucrata HOM05D007348 ORTHO05D009257 4.6e-38 161.4 140 62.9
Hund09099 Selenicereus undatus HOM05D007348 ORTHO05D009257 4.6e-38 161.4 100 80.0
PGR004G1504 Punica granatum HOM05D007348 ORTHO05D009257 7.9e-38 160.6 92 84.8
Thecc.05G036200 Theobroma cacao HOM05D007348 ORTHO05D009257 7.9e-38 160.6 139 64.0
TAR636G2125 Trochodendron aralioides HOM05D007348 ORTHO05D009257 7.9e-38 160.6 138 63.8
SGA_v2.0_scaffold94G28573 Striga asiatica HOM05D007348 ORTHO05D009257 1.0e-37 160.2 99 80.8
FAN02G3968 Fragaria x ananassa HOM05D007348 ORTHO05D009257 1.3e-37 159.8 121 67.8
Gorai.006G171200 Gossypium raimondii HOM05D007348 ORTHO05D009257 1.3e-37 159.8 140 65.0
Prupe.6G258300 Prunus persica HOM05D007348 ORTHO05D009257 1.3e-37 159.8 133 63.9
Cfa017345 Carpinus fangiana HOM05D007348 ORTHO05D009257 2.3e-37 159.1 139 61.9
ClCG10G021280 Citrullus lanatus HOM05D007348 ORTHO05D009257 2.3e-37 159.1 92 83.7
Gohir.D09G150000 Gossypium hirsutum HOM05D007348 ORTHO05D009257 3.0e-37 158.7 140 64.3
Sed0022418 Sechium edule HOM05D007348 ORTHO05D009257 3.0e-37 158.7 104 76.9
TAR636G0176 Trochodendron aralioides HOM05D007348 ORTHO05D009257 3.0e-37 158.7 138 63.8
Gohir.A09G154300 Gossypium hirsutum HOM05D007348 ORTHO05D009257 3.9e-37 158.3 140 64.3
Atru.chr8.2007 Acer truncatum HOM05D007348 ORTHO05D009257 5.1e-37 157.9 94 83.0
Cc06_g02390 Coffea canephora HOM05D007348 ORTHO05D009257 6.7e-37 157.5 97 81.4
PGSC0003DMG400019150 Solanum tuberosum HOM05D007348 ORTHO05D009257 6.7e-37 157.5 129 63.6
CSS0018490 Camellia sinensis var. sinensis HOM05D007348 ORTHO05D009257 8.7e-37 157.1 137 63.5
FAN05G4426 Fragaria x ananassa HOM05D007348 ORTHO05D009257 8.7e-37 157.1 123 67.5
RcHm_v2.0_Chr3g0466241 Rosa chinensis HOM05D007348 ORTHO05D009257 8.7e-37 157.1 124 66.9
Sc01g0004470 Simmondsia chinensis HOM05D007348 ORTHO05D009257 8.7e-37 157.1 123 67.5
CANSAT35G0511 Cannabis sativa HOM05D007348 ORTHO05D009257 1.1e-36 156.8 97 79.4
Migut.L01962 Erythranthe guttata HOM05D007348 ORTHO05D009257 1.1e-36 156.8 112 71.4
FvH4_6g13360 Fragaria vesca HOM05D007348 ORTHO05D009257 1.5e-36 156.4 123 66.7
FAN14G5390 Fragaria x ananassa HOM05D007348 ORTHO05D009257 1.5e-36 156.4 123 66.7
CiPaw.09G195200 Carya illinoinensis HOM05D007348 ORTHO05D009257 1.9e-36 156.0 92 82.6
Migut.J00309 Erythranthe guttata HOM05D007348 ORTHO05D009257 2.5e-36 155.6 94 79.8
LjContig00141g0000939 Lotus japonicus HOM05D007348 ORTHO05D009257 2.5e-36 155.6 124 66.1
Nitab4.5_0000527g0200 Nicotiana tabacum HOM05D007348 ORTHO05D009257 2.5e-36 155.6 121 67.8
FAN09G3409 Fragaria x ananassa HOM05D007348 ORTHO05D009257 3.3e-36 155.2 123 67.5
MELO3C009245.2 Cucumis melo HOM05D007348 ORTHO05D009257 4.3e-36 154.8 120 66.7
Oeu006894.1 Olea europaea HOM05D007348 ORTHO05D009257 4.3e-36 154.8 129 65.1
CAN.G92.20 Capsicum annuum HOM05D007348 ORTHO05D009257 5.6e-36 154.5 92 81.5
Eucgr.K03108 Eucalyptus grandis HOM05D007348 ORTHO05D009257 7.4e-36 154.1 92 81.5
unitig_21.g21015 Utricularia gibba HOM05D007348 ORTHO05D009257 7.4e-36 154.1 95 78.9
Ah.12g059960 Amaranthus hybridus HOM05D007348 ORTHO05D009257 9.6e-36 153.7 104 75.0
CsaV3_3G034760 Cucumis sativus L. HOM05D007348 ORTHO05D009257 9.6e-36 153.7 100 76.0
Nitab4.5_0008097g0010 Nicotiana tabacum HOM05D007348 ORTHO05D009257 1.6e-35 152.9 132 62.9
vmacro20175 Vaccinium macrocarpon HOM05D007348 ORTHO05D009257 1.6e-35 152.9 99 73.7
AUR62042385 Chenopodium quinoa HOM05D007348 ORTHO05D009257 2.1e-35 152.5 92 81.5
ECA247G0870 Erigeron canadensis HOM05D007348 ORTHO05D009257 2.1e-35 152.5 128 62.5
ATR0559G267 Amborella trichopoda HOM05D007348 ORTHO05D009257 2.8e-35 152.1 104 71.2
Lsat_1_v5_gn_9_32101 Lactuca sativa HOM05D007348 ORTHO05D009257 2.8e-35 152.1 128 63.3
MBI14_g08036_MAGBIO Magnolia biondii HOM05D007348 ORTHO05D009257 3.7e-35 151.8 96 78.1
Sopen10g035960 Solanum pennellii HOM05D007348 ORTHO05D009257 4.8e-35 151.4 92 78.3
Actinidia11269 Actinidia chinensis HOM05D007348 ORTHO05D009257 6.2e-35 151.0 135 60.7
arahy.Tifrunner.gnm1.ann1.HF038C Arachis hypogaea HOM05D007348 ORTHO05D009257 8.1e-35 150.6 85 85.9
arahy.Tifrunner.gnm1.ann1.IF8W7F Arachis hypogaea HOM05D007348 ORTHO05D009257 8.1e-35 150.6 85 85.9
Glyma.18G184000 Glycine max HOM05D007348 ORTHO05D009257 8.1e-35 150.6 107 69.2
HanXRQChr10g0298181 Helianthus annuus HOM05D007348 ORTHO05D009257 1.1e-34 150.2 103 71.8
SEGI_32371 Sequoiadendron giganteum HOM05D007348 ORTHO05D009257 1.1e-34 150.2 94 76.6
CDE04G2102 Ceratophyllum demersum HOM05D000082 ORTHO05D001639 2.4e-34 149.1 92 78.3
C09p74340 Brassica napus HOM05D007348 ORTHO05D009257 3.1e-34 148.7 122 66.4
BolC9t60168H Brassica oleracea HOM05D007348 ORTHO05D009257 3.1e-34 148.7 122 66.4
Lalb_Chr01g0022591 Lupinus albus HOM05D007348 ORTHO05D009257 4.0e-34 148.3 100 72.0
Nn2g13409 Nelumbo nucifera HOM05D007348 ORTHO05D009257 4.0e-34 148.3 95 74.7
VMungo1383G1736 Vigna mungo HOM05D007348 ORTHO05D009257 4.0e-34 148.3 107 67.3
A10p33440 Brassica napus HOM05D007348 ORTHO05D009257 6.9e-34 147.5 122 65.6
BraA10t45374Z Brassica rapa HOM05D007348 ORTHO05D009257 6.9e-34 147.5 122 65.6
THA.LOC104816258 Tarenaya hassleriana HOM05D007348 ORTHO05D009257 6.9e-34 147.5 92 76.1
Aa31LG1G22570 Aethionema arabicum HOM05D007348 ORTHO05D009257 9.0e-34 147.1 121 65.3
Peaxi162Scf00330g00089 Petunia axillaris HOM05D007348 ORTHO05D009257 9.0e-34 147.1 92 77.2
CDE07G1011 Ceratophyllum demersum HOM05D007348 ORTHO05D009257 2.0e-33 146.0 92 76.1
Solyc10g086570.3 Solanum lycopersicum HOM05D007348 ORTHO05D009257 2.0e-33 146.0 93 76.3
Ca_25900_v3 Cicer arietinum L. HOM05D007348 ORTHO05D009257 2.6e-33 145.6 130 60.8
Haze_20824 Corylus avellana HOM05D007348 ORTHO05D009257 2.6e-33 145.6 132 60.6
Phvul.008G118700 Phaseolus vulgaris HOM05D007348 ORTHO05D009257 4.5e-33 144.8 106 67.9
EL10As1g23094 Beta vulgaris HOM05D007348 ORTHO05D009257 7.6e-33 144.1 90 78.9
Glyma.07G134500 Glycine max HOM05D007348 ORTHO05D009257 2.2e-32 142.5 108 67.6
Zm00001eb355890 Zea mays HOM05D007348 ORTHO05D009257 2.9e-32 142.1 84 78.6
Aqoxy1G00895 Aquilegia oxysepala HOM05D007348 ORTHO05D009257 4.9e-32 141.4 92 72.8
Thhalv10014990m.g Eutrema salsugineum HOM05D007348 ORTHO05D009257 6.4e-32 141.0 83 81.9
Sp6g40280 Schrenkiella parvula HOM05D007348 ORTHO05D009257 1.4e-31 139.8 102 68.6
HPP92_026789 Vanilla planifolia HOM05D007348 ORTHO05D009257 1.4e-31 139.8 84 81.0
AT5G02160 Arabidopsis thaliana HOM05D007348 ORTHO05D009257 5.5e-31 137.9 116 61.2
Duzib093G0801 Durio zibethinus HOM05D007348 ORTHO05D009257 7.1e-31 137.5 85 80.0
Medtr7g062470 Medicago truncatula HOM05D007348 ORTHO05D009257 7.1e-31 137.5 84 76.2
Psat3g137840 Pisum sativum HOM05D007348 ORTHO05D009257 9.3e-31 137.1 129 55.0
Os05g0110100 Oryza sativa ssp. japonica HOM05D007348 ORTHO05D009257 1.2e-30 136.7 83 78.3
PSO339G0488 Papaver somniferum HOM05D007348 ORTHO05D009257 1.6e-30 136.3 95 67.4
Duzib106G1977 Durio zibethinus HOM05D007348 ORTHO05D009257 4.6e-30 134.8 82 80.5
Pp3c3_5420 Physcomitrium patens HOM05D007348 ORTHO05D009257 6.0e-30 134.4 84 73.8
PSO063G2704 Papaver somniferum HOM05D007348 ORTHO05D009257 7.9e-30 134.0 94 69.1
Carub.0006s0100 Capsella rubella HOM05D007348 ORTHO05D009257 1.0e-29 133.7 82 76.8
Pp3c13_7350 Physcomitrium patens HOM05D007348 ORTHO05D009257 1.0e-29 133.7 84 75.0
AL6G11390 Arabidopsis lyrata HOM05D007348 ORTHO05D009257 1.3e-29 133.3 82 76.8
SMO174G0219 Selaginella moellendorffii HOM05D007348 ORTHO05D009257 1.1e-28 130.2 88 69.3
CARHR211200 Cardamine hirsuta HOM05D007348 ORTHO05D009257 3.7e-27 125.2 114 54.4
Mapoly0046s0114 Marchantia polymorpha HOM05D007348 ORTHO05D009257 4.8e-27 124.8 85 70.6
CBR_g52180 Chara braunii HOM05D007348 ORTHO05D009257 8.4e-24 114.0 94 61.7
CANSAT35G1486 Cannabis sativa HOM05D007348 ORTHO05D009257 1.3e-21 106.7 134 46.3
HPP92_000744 Vanilla planifolia HOM05D007348 ORTHO05D009257 1.7e-16 89.7 84 58.3
TPR.G27019 Trifolium pratense HOM05D007348 ORTHO05D009257 8.5e-16 87.4 46 84.8
AagrBONN_evm.TU.Sc2ySwM_117.386 Anthoceros agrestis HOM05D007348 ORTHO05D009257 1.4e-07 60.1 39 71.8
TPR.G1710 Trifolium pratense HOM05D007348 ORTHO05D009257 7.2e-07 57.8 85 40.0


User provided reference genes

Program Settings