Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 0.0e+00 2361.3 1832 100.0
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 1.7e-229 801.2 1104 46.0
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 3.2e-225 786.9 1104 46.0
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 3.6e-216 756.9 1092 44.3
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 3.3e-214 750.4 1105 44.7
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.9e-209 734.6 1106 42.7
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.0e-207 728.8 1108 42.8
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 9.5e-201 705.7 1106 43.0
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 1.4e-199 701.8 1105 41.0
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 4.4e-198 696.8 1134 41.1
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.1e-193 682.2 1094 41.4
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.0e-191 675.6 1094 41.1
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.3e-191 674.5 1136 40.4
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 8.3e-189 666.0 1099 42.0
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 9.2e-188 662.5 1107 40.0
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 1.9e-185 654.8 1113 40.1
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 4.3e-185 653.7 1109 40.6
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 7.3e-185 652.9 1110 40.4
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 8.9e-183 646.0 878 45.8
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 7.0e-180 636.3 1097 40.9
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 2.2e-165 588.2 1091 38.7
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.2e-157 561.6 901 41.4
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.0e-154 552.7 1104 37.2
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 1.5e-153 548.9 1066 37.7
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.6e-150 538.1 844 41.6
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 3.8e-149 534.3 858 39.5
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 4.9e-149 533.9 1071 37.9
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 1.0e-146 526.2 1055 37.3
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 2.3e-146 525.0 1085 37.9
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.5e-145 522.3 862 40.0
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 2.5e-145 521.5 1126 35.5
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.3e-144 519.2 1037 37.1
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 2.8e-144 518.1 1100 36.0
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 6.2e-144 516.9 1104 35.2
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.1e-143 516.2 1040 37.0
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 5.3e-143 513.8 1239 33.8
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 2.0e-142 511.9 1098 35.0
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 3.4e-142 511.1 1095 33.9
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.8e-141 507.7 1039 36.9
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 2.5e-140 505.0 1101 34.4
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 9.3e-140 503.1 1116 34.9
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 2.7e-139 501.5 1096 34.9
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 2.5e-137 495.0 1048 35.5
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 3.7e-136 491.1 738 42.5
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 6.2e-136 490.3 1094 34.3
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 1.2e-134 486.1 1166 33.1
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.5e-134 485.7 1104 34.2
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 1.0e-133 483.0 1096 33.9
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 1.3e-133 482.6 1099 34.3
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 1.0e-130 473.0 1093 34.7
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 1.1e-129 469.5 1093 33.4
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 1.8e-127 462.2 1115 33.2
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 1.5e-126 459.1 1092 34.1
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 2.0e-126 458.8 1077 34.2
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 5.9e-126 457.2 1117 32.8
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 7.7e-126 456.8 1112 33.4
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 1.3e-125 456.1 1078 33.0
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 2.9e-125 454.9 1122 34.0
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 1.6e-123 449.1 1117 33.9
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 2.7e-123 448.4 1072 32.8
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 2.7e-123 448.4 1097 32.3
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 6.7e-122 443.7 1086 33.2
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 1.3e-120 439.5 1078 33.7
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 3.4e-118 431.4 1086 32.4
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.3e-117 429.5 1062 32.6
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 3.6e-115 421.4 1085 31.1
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 6.1e-115 420.6 1087 31.2
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 5.7e-113 414.1 1087 31.0
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.3e-112 412.9 977 34.0
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 2.8e-112 411.8 1087 30.9
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 1.1e-111 409.8 1114 32.8
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 5.3e-111 407.5 1030 32.2
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 2.0e-110 405.6 1085 31.2
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 5.9e-110 404.1 1084 31.0
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 1.0e-109 403.3 1088 32.1
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 1.3e-109 402.9 910 35.3
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 3.7e-104 384.8 819 34.9
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 1.1e-103 383.3 1036 33.5
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 7.0e-103 380.6 1088 31.2
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 2.9e-101 375.2 1086 30.4
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 1.1e-100 373.2 1051 30.5
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 4.7e-99 367.9 1089 30.0
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 2.7e-94 352.1 1084 29.5
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 5.9e-94 350.9 889 33.2
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 8.5e-93 347.1 1079 30.0
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 5.5e-92 344.4 1109 28.8
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 5.5e-92 344.4 966 29.9
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 6.1e-91 340.9 821 33.4
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 2.3e-90 339.0 974 30.9
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 5.2e-90 337.8 954 31.0
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 7.5e-89 334.0 1066 30.1
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 6.6e-85 320.9 1089 27.7
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 1.6e-83 316.2 1052 29.2
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 6.1e-83 314.3 935 31.4
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 3.0e-82 312.0 1091 28.0
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 6.8e-82 310.8 1108 28.5
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 2.6e-81 308.9 810 30.4
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 2.9e-80 305.4 1101 28.1
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 1.0e-77 297.0 777 31.1
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 3.9e-77 295.0 787 31.3
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 9.2e-71 273.9 1099 26.4
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.3e-69 270.0 1128 27.1
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 2.1e-67 262.7 1072 27.5
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 8.3e-64 250.8 801 30.8
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 9.2e-63 247.3 1075 27.6
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-60 240.4 425 37.6
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.5e-60 240.0 425 37.6
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.5e-60 240.0 425 37.6
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.4e-58 233.4 1065 26.3
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 2.2e-48 199.5 633 30.0
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 5.6e-44 184.9 238 45.0
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 4.0e-42 178.7 458 31.2
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 6.6e-37 161.4 287 33.4
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 1.1e-34 154.1 1162 23.2
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 2.6e-33 149.4 333 32.1
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 5.8e-33 148.3 496 30.2
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 7.6e-33 147.9 330 32.4
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 1.3e-32 147.1 333 32.1
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 9.3e-31 141.0 293 32.1
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 6.0e-30 138.3 146 50.0
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 1.3e-24 120.6 144 46.5
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 2.9e-24 119.4 385 27.3
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 1.9e-23 116.7 146 48.6
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 5.5e-23 115.2 121 50.4
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 5.1e-21 108.6 317 30.3
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.5e-20 107.1 174 38.5
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.3e-19 104.0 135 39.3
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 8.2e-19 101.3 915 21.7
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 9.0e-18 97.8 154 43.5
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 5.9e-17 95.1 140 35.0
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.3e-16 94.0 106 49.1
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 8.4e-16 91.3 1066 22.7
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 1.4e-15 90.5 149 40.9
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 1.0e-13 84.3 215 33.5
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 6.7e-13 81.6 117 43.6
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 1.9e-12 80.1 223 28.7
Aa31LG10G6530 Aethionema arabicum HOM05D005129 ORTHO05D005585 4.3e-12 79.0 152 35.5
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 4.3e-12 79.0 87 49.4
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 2.8e-11 76.3 370 24.9
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 1.8e-10 73.6 165 32.7
SEGI_31962 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.6e-09 69.7 374 25.7
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 2.6e-09 69.7 121 38.8
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 3.4e-09 69.3 115 40.0
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 1.1e-07 64.3 71 49.3
PSO675G2011 Papaver somniferum HOM05D026995 ORTHO05D005585 1.1e-07 64.3 71 49.3
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 2.5e-07 63.2 111 39.6
PSO541G0381 Papaver somniferum HOM05D026995 ORTHO05D005585 4.2e-07 62.4 71 49.3
DCAR_005756 Daucus carota HOM05D005129 ORTHO05D005585 3.6e-06 59.3 69 47.8


User provided reference genes

Program Settings