Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 5.4e-159 564.3 290 100.0
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 9.6e-124 447.2 265 84.5
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 9.6e-124 447.2 265 84.9
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.3e-123 446.8 290 81.7
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.3e-123 446.8 263 85.2
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 8.1e-123 444.1 264 84.5
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 8.1e-123 444.1 290 83.1
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 1.1e-122 443.7 261 85.4
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.4e-122 443.4 269 82.5
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 3.1e-122 442.2 264 83.3
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 3.1e-122 442.2 290 79.7
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 6.9e-122 441.0 267 83.1
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 6.9e-122 441.0 267 82.8
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 1.2e-121 440.3 266 82.3
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 1.5e-121 439.9 267 82.4
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 2.6e-121 439.1 263 84.0
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 4.5e-121 438.3 290 80.7
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 4.5e-121 438.3 263 83.3
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 5.8e-121 438.0 266 83.1
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 5.8e-121 438.0 290 79.7
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 5.8e-121 438.0 267 82.0
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 5.8e-121 438.0 262 84.4
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 7.6e-121 437.6 269 80.7
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 1.3e-120 436.8 262 83.2
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.7e-120 436.4 264 82.2
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 2.2e-120 436.0 266 81.2
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 2.2e-120 436.0 271 80.4
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 2.2e-120 436.0 261 82.4
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 3.8e-120 435.3 290 80.0
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 3.8e-120 435.3 267 80.5
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 6.4e-120 434.5 263 82.5
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 8.4e-120 434.1 263 84.0
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 8.4e-120 434.1 266 81.2
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 8.4e-120 434.1 266 81.2
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 1.4e-119 433.3 265 81.9
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.4e-119 433.3 267 82.4
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 1.9e-119 433.0 290 81.0
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 1.9e-119 433.0 270 81.9
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 2.4e-119 432.6 290 80.7
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 2.4e-119 432.6 290 80.3
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 3.2e-119 432.2 265 81.9
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 3.2e-119 432.2 262 82.4
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 4.2e-119 431.8 265 81.5
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 4.2e-119 431.8 270 80.4
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 4.2e-119 431.8 264 81.8
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 7.1e-119 431.0 273 79.9
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 1.2e-118 430.3 262 82.4
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.6e-118 429.9 256 84.4
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 2.7e-118 429.1 262 82.4
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 6.0e-118 427.9 261 82.0
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 6.0e-118 427.9 264 81.4
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.0e-118 427.9 264 81.4
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 7.9e-118 427.6 265 80.8
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 7.9e-118 427.6 261 82.0
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.9e-118 427.6 264 81.1
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.0e-117 427.2 262 82.1
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 1.0e-117 427.2 265 80.0
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 1.3e-117 426.8 266 80.1
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 2.3e-117 426.0 266 80.5
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 2.3e-117 426.0 265 81.5
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 2.3e-117 426.0 274 78.1
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 3.0e-117 425.6 263 81.4
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.9e-117 425.2 264 80.7
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 3.9e-117 425.2 261 81.6
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.1e-116 423.7 264 80.7
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 1.5e-116 423.3 264 79.9
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.5e-116 423.3 257 82.9
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 1.9e-116 422.9 263 80.2
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 2.5e-116 422.5 266 80.5
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 2.5e-116 422.5 264 80.3
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.5e-116 422.5 259 82.2
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 4.3e-116 421.8 261 80.8
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 5.6e-116 421.4 269 80.3
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 5.6e-116 421.4 260 81.2
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 7.4e-116 421.0 261 79.7
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 1.6e-115 419.9 261 80.1
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 1.6e-115 419.9 254 83.1
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 1.6e-115 419.9 261 80.8
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 2.1e-115 419.5 261 80.1
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 2.1e-115 419.5 261 80.8
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 3.7e-115 418.7 261 80.1
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 6.2e-115 417.9 267 78.7
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 6.2e-115 417.9 261 80.1
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 1.8e-114 416.4 267 78.3
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 6.9e-114 414.5 265 80.4
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 9.0e-114 414.1 261 79.7
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 9.0e-114 414.1 264 77.3
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 3.4e-113 412.1 259 79.2
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 4.5e-113 411.8 258 80.2
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 4.9e-112 408.3 261 77.8
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 4.3e-108 395.2 353 61.2
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 2.8e-107 392.5 259 77.2
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 3.7e-107 392.1 264 74.6
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 4.8e-107 391.7 261 76.6
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 7.6e-105 384.4 243 81.9
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 2.9e-104 382.5 268 71.6
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 1.1e-103 380.6 259 74.1
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 1.9e-103 379.8 240 80.8
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 4.3e-100 368.6 254 73.2
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.9e-95 353.2 256 69.9
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 1.0e-93 347.4 230 78.3
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 2.4e-90 336.3 171 95.9
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 4.5e-89 332.0 171 94.2
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 6.5e-88 328.2 171 93.0
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 7.2e-87 324.7 261 66.7
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 9.4e-87 324.3 171 92.4
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 1.8e-85 320.1 265 62.6
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 2.3e-85 319.7 168 93.5
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 7.0e-82 308.1 183 84.2
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.0e-72 277.7 143 95.8
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 9.4e-71 271.2 147 90.5
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 6.1e-70 268.5 155 86.5
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 8.8e-69 264.6 155 85.2
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 3.4e-68 262.7 178 75.3
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 9.8e-68 261.2 167 75.4
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.8e-66 256.9 156 81.4
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.6e-65 253.8 144 87.5
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.3e-64 250.8 144 84.7
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.1e-63 247.7 144 85.4
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 3.0e-61 239.6 158 76.6
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 8.3e-59 231.5 181 68.0
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.9e-57 225.3 183 65.0
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 6.8e-53 211.8 141 75.9
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.5e-52 210.7 165 66.7
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.6e-48 195.3 144 70.8
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 2.2e-43 180.3 167 60.5
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 4.9e-43 179.1 202 49.5
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 3.3e-31 139.8 76 90.8
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 2.3e-29 133.7 73 84.9
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 2.9e-27 126.7 66 86.4
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 4.1e-26 122.9 110 60.9
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 3.9e-24 116.3 93 63.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 5.4e-18 95.9 53 81.1
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 1.6e-17 94.4 53 79.2
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 1.0e-16 91.7 51 86.3
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 3.3e-15 86.7 46 80.4
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 7.3e-15 85.5 48 79.2


User provided reference genes

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