Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 1.4e-170 602.8 295 100.0
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 5.4e-122 441.4 291 70.1
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 7.7e-121 437.6 291 69.4
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 1.0e-120 437.2 291 68.7
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 1.7e-120 436.4 291 70.1
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 2.5e-119 432.6 291 69.1
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 9.5e-119 430.6 291 70.8
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 9.5e-119 430.6 292 67.1
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 2.1e-118 429.5 291 68.4
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 3.6e-118 428.7 291 68.4
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 6.1e-118 427.9 291 69.4
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 6.1e-118 427.9 291 69.4
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.4e-117 426.8 291 68.7
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.4e-117 426.8 291 69.1
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 1.8e-117 426.4 291 68.4
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 4.0e-117 425.2 291 68.7
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 5.2e-117 424.9 291 68.0
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 6.8e-117 424.5 291 68.4
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 8.9e-117 424.1 291 68.0
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.2e-116 423.7 291 68.7
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 2.0e-116 422.9 291 68.4
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.4e-116 422.2 291 68.4
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 5.7e-116 421.4 291 67.7
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 5.7e-116 421.4 291 67.4
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 7.5e-116 421.0 291 70.1
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 7.5e-116 421.0 291 67.0
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 1.3e-115 420.2 292 68.2
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 1.7e-115 419.9 291 67.4
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 2.8e-115 419.1 291 67.0
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 3.7e-115 418.7 291 67.7
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 4.9e-115 418.3 291 67.0
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 8.3e-115 417.5 291 68.0
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 8.3e-115 417.5 291 67.7
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.1e-114 417.2 291 67.4
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 1.4e-114 416.8 291 66.3
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.4e-114 416.8 291 66.3
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 1.8e-114 416.4 292 67.5
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 3.1e-114 415.6 292 67.1
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 4.1e-114 415.2 291 67.0
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 4.1e-114 415.2 297 66.0
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 7.0e-114 414.5 292 67.1
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 2.7e-113 412.5 291 66.0
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 2.7e-113 412.5 291 66.7
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.7e-113 412.5 291 66.7
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 3.5e-113 412.1 291 64.3
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 4.5e-113 411.8 292 66.8
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 4.5e-113 411.8 291 66.0
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 7.8e-113 411.0 291 64.9
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 7.8e-113 411.0 291 66.3
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 7.8e-113 411.0 291 66.0
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 1.0e-112 410.6 292 66.1
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.0e-112 410.6 291 64.9
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 1.0e-112 410.6 291 66.0
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 1.0e-112 410.6 292 67.1
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 1.7e-112 409.8 291 67.0
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 3.8e-112 408.7 291 66.7
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 3.8e-112 408.7 291 66.0
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 6.6e-112 407.9 291 66.3
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 6.6e-112 407.9 291 64.3
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 6.6e-112 407.9 291 65.6
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 8.6e-112 407.5 301 63.1
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.5e-111 406.8 291 66.0
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 1.5e-111 406.8 291 65.3
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 1.9e-111 406.4 291 65.3
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 9.5e-111 404.1 291 65.3
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 2.8e-110 402.5 291 65.6
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 2.8e-110 402.5 291 65.3
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 8.0e-110 401.0 291 62.9
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 1.8e-109 399.8 291 63.6
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 5.2e-109 398.3 292 66.1
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 2.0e-108 396.4 291 63.9
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 1.7e-107 393.3 291 63.9
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 3.7e-107 392.1 293 65.9
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 3.7e-107 392.1 291 63.2
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.4e-107 391.3 292 63.4
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 1.1e-106 390.6 291 60.8
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 7.0e-106 387.9 293 64.5
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 9.2e-106 387.5 291 64.3
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 3.5e-105 385.6 291 62.5
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 4.6e-105 385.2 297 62.0
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 8.6e-104 380.9 267 67.4
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 8.6e-104 380.9 292 62.7
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.9e-103 379.8 292 62.0
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 2.5e-103 379.4 291 60.8
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.6e-103 378.3 290 61.7
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 3.6e-102 375.6 292 60.6
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 4.7e-102 375.2 291 60.1
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 6.2e-102 374.8 291 61.5
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 6.2e-102 374.8 295 61.7
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 8.0e-102 374.4 291 61.2
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.1e-101 374.0 291 61.2
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 2.3e-101 372.9 292 59.6
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 2.3e-101 372.9 291 60.1
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 4.0e-101 372.1 293 58.4
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 5.2e-101 371.7 291 60.1
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 8.9e-101 370.9 291 59.1
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 1.2e-100 370.5 291 61.2
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 1.5e-100 370.2 291 59.8
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.5e-100 370.2 291 59.8
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 1.5e-100 370.2 291 59.8
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 2.0e-100 369.8 291 58.8
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 2.6e-100 369.4 304 59.5
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 3.4e-100 369.0 304 58.9
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 5.8e-100 368.2 318 57.2
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 5.8e-100 368.2 318 57.2
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 2.9e-99 365.9 291 59.1
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 8.3e-99 364.4 284 62.0
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 1.9e-98 363.2 293 60.1
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 2.4e-98 362.8 293 59.7
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 3.2e-98 362.5 292 58.6
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 2.7e-97 359.4 291 59.5
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 6.6e-96 354.8 294 56.5
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 1.1e-95 354.0 291 56.4
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 1.9e-95 353.2 318 54.4
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 1.1e-93 347.4 328 53.4
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 5.2e-93 345.1 292 59.6
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 1.9e-90 336.7 292 54.5
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 4.1e-90 335.5 291 56.7
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 5.1e-88 328.6 264 59.1
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.5e-87 326.2 291 56.0
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 5.2e-85 318.5 293 52.2
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 1.5e-84 317.0 297 50.5
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 1.7e-83 313.5 297 49.8
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 2.9e-83 312.8 297 53.9
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 2.3e-80 303.1 216 65.7
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 3.0e-80 302.8 293 51.5
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 9.0e-77 291.2 291 51.5
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 3.9e-72 275.8 280 52.1
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 6.2e-70 268.5 183 66.1
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 1.1e-63 247.7 314 43.3
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 2.5e-63 246.5 295 44.4
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 2.4e-61 240.0 297 43.1
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 8.4e-59 231.5 292 45.5
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.5e-58 229.9 226 51.3
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 8.2e-54 214.9 298 42.3
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 1.1e-50 204.5 127 74.8
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.9e-47 193.7 230 45.7
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.9e-47 193.7 233 46.8
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 2.5e-47 193.4 178 53.9
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 6.7e-40 168.7 292 40.1
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 6.7e-40 168.7 292 40.1
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 4.1e-37 159.5 113 61.9
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 1.7e-35 154.1 288 37.5
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.2e-34 148.7 119 56.3
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 3.0e-32 143.3 294 34.0
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 6.5e-27 125.6 105 58.1
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 9.4e-18 95.1 57 77.2
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.6e-17 94.4 123 40.7
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 1.0e-16 91.7 71 63.4
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 8.8e-16 88.6 51 78.4
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 8.3e-14 82.0 82 50.0
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 1.3e-11 74.7 41 82.9
Actinidia16182 Actinidia chinensis HOM05D002973 ORTHO05D003383 2.8e-06 57.0 58 48.3


User provided reference genes

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