Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc166.16 Carica papaya HOM05D006050 ORTHO05D007457 2.6e-80 302.0 150 100.0
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 5.8e-24 114.8 127 52.0
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 9.7e-19 97.4 134 45.5
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 2.8e-18 95.9 100 50.0
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 4.1e-17 92.0 108 48.1
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 9.0e-17 90.9 76 57.9
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 1.5e-16 90.1 87 51.7
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 3.4e-16 89.0 136 41.2
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 4.5e-16 88.6 116 44.0
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 4.5e-16 88.6 140 41.4
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 7.6e-16 87.8 145 40.7
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 2.9e-15 85.9 112 44.6
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 5.0e-15 85.1 141 37.6
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 1.1e-14 84.0 132 37.9
Lalb_Chr18g0055521 Lupinus albus HOM05D006050 ORTHO05D007457 1.1e-14 84.0 142 38.7
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 1.4e-14 83.6 86 50.0
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 1.9e-14 83.2 145 42.8
COL.COLO4_31087 Corchorus olitorius HOM05D006050 ORTHO05D007457 2.5e-14 82.8 91 46.2
Glyma.13G217500 Glycine max HOM05D006050 ORTHO05D007457 2.5e-14 82.8 121 41.3
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 2.5e-14 82.8 95 48.4
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 4.2e-14 82.0 138 37.0
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 9.3e-14 80.9 100 41.0
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 9.3e-14 80.9 78 52.6
Prupe.4G079600 Prunus persica HOM05D006050 ORTHO05D007457 2.1e-13 79.7 137 37.2
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 3.6e-13 79.0 102 47.1
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 4.6e-13 78.6 112 39.3
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 7.9e-13 77.8 148 34.5
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 7.9e-13 77.8 109 41.3
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 1.8e-12 76.6 91 50.5
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 1.8e-12 76.6 73 54.8
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 2.3e-12 76.3 133 41.4
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 3.0e-12 75.9 82 51.2
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 3.0e-12 75.9 124 40.3
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 5.1e-12 75.1 78 47.4
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 5.1e-12 75.1 132 35.6
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 3.3e-11 72.4 149 32.2
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 4.3e-11 72.0 95 44.2
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 1.7e-10 70.1 99 37.4
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 4.8e-10 68.6 77 45.5
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 4.8e-10 68.6 88 44.3
CSS0038270 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 6.3e-10 68.2 110 39.1
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 8.2e-10 67.8 100 40.0
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 1.1e-09 67.4 144 36.8
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.1e-09 67.4 92 38.0
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 1.4e-09 67.0 105 40.0
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 1.8e-09 66.6 92 38.0
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 1.8e-09 66.6 90 40.0
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 1.8e-09 66.6 138 37.0
AUR62030211 Chenopodium quinoa HOM05D006050 ORTHO05D007457 5.3e-09 65.1 92 37.0
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 2.0e-08 63.2 123 35.8
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 3.4e-08 62.4 120 37.5
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 3.4e-08 62.4 127 36.2
Sopen02g019650 Solanum pennellii HOM05D006050 ORTHO05D007457 3.4e-08 62.4 131 38.2
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 4.5e-08 62.0 73 45.2
MBI10_g02215_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 4.5e-08 62.0 102 36.3
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 1.3e-07 60.5 130 37.7
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 2.2e-07 59.7 95 37.9
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 2.2e-07 59.7 111 39.6
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 2.9e-07 59.3 106 36.8
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 3.8e-07 58.9 95 37.9
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 3.8e-07 58.9 129 34.9
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 3.8e-07 58.9 139 33.8
unitig_32.g11518 Utricularia gibba HOM05D006050 ORTHO05D007457 3.8e-07 58.9 90 40.0
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 5.0e-07 58.5 53 56.6
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 5.0e-07 58.5 117 35.9
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 5.0e-07 58.5 105 33.3
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 6.5e-07 58.2 92 33.7
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 8.5e-07 57.8 114 39.5
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 8.5e-07 57.8 74 45.9
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.1e-06 57.4 114 39.5
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 1.9e-06 56.6 78 35.9
vmacro04187 Vaccinium macrocarpon HOM05D006050 ORTHO05D030710 2.5e-06 56.2 109 35.8
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 9.4e-06 54.3 79 45.6
Zm00001eb120180 Zea mays HOM05D006050 ORTHO05D007457 9.4e-06 54.3 88 42.0


User provided reference genes

Program Settings