Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc165.9 Carica papaya HOM05D007363 ORTHO05D009018 1.4e-75 286.2 145 100.0
FvH4_2g21450 Fragaria vesca HOM05D007363 ORTHO05D009018 1.4e-43 179.9 136 64.7
TWI18G0555 Tripterygium wilfordii HOM05D007363 ORTHO05D009018 1.9e-43 179.5 127 67.7
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 9.3e-43 177.2 139 61.2
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 3.5e-42 175.3 139 59.7
FAN24G0389 Fragaria x ananassa HOM05D007363 ORTHO05D009018 4.6e-42 174.9 126 65.9
Atru.chr5.1691 Acer truncatum HOM05D007363 ORTHO05D009018 1.3e-41 173.3 145 60.7
Prupe.8G223500 Prunus persica HOM05D007363 ORTHO05D009018 2.3e-41 172.6 147 58.5
FAN20G0360 Fragaria x ananassa HOM05D007363 ORTHO05D009018 3.9e-41 171.8 126 65.1
arahy.Tifrunner.gnm1.ann1.1CEJ34 Arachis hypogaea HOM05D007363 ORTHO05D009018 5.1e-41 171.4 137 61.3
MD05G1197000 Malus domestica HOM05D007363 ORTHO05D009018 5.1e-41 171.4 145 60.7
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 6.6e-41 171.0 127 64.6
HanXRQChr10g0280941 Helianthus annuus HOM05D007363 ORTHO05D009018 6.6e-41 171.0 142 59.9
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 1.5e-40 169.9 142 59.2
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 1.5e-40 169.9 154 57.1
Actinidia25792 Actinidia chinensis HOM05D007363 ORTHO05D009018 1.9e-40 169.5 140 62.1
arahy.Tifrunner.gnm1.ann1.F24DAH Arachis hypogaea HOM05D007363 ORTHO05D009018 2.5e-40 169.1 137 61.3
FAN15G0604 Fragaria x ananassa HOM05D007363 ORTHO05D009018 2.5e-40 169.1 133 63.9
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 2.5e-40 169.1 139 58.3
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 5.6e-40 167.9 140 63.6
CiPaw.04G186800 Carya illinoinensis HOM05D007363 ORTHO05D009018 9.6e-40 167.2 123 63.4
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 9.6e-40 167.2 145 60.0
Phvul.001G161200 Phaseolus vulgaris HOM05D007363 ORTHO05D009018 1.3e-39 166.8 142 60.6
Solyc06g083880.2 Solanum lycopersicum HOM05D007363 ORTHO05D009018 1.3e-39 166.8 143 58.7
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 1.6e-39 166.4 139 61.2
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 2.1e-39 166.0 125 64.0
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 2.8e-39 165.6 132 61.4
Sopen06g035280 Solanum pennellii HOM05D007363 ORTHO05D009018 2.8e-39 165.6 148 56.8
Duzib133G1388 Durio zibethinus HOM05D007363 ORTHO05D009018 3.6e-39 165.2 125 62.4
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 4.8e-39 164.9 120 65.8
RcHm_v2.0_Chr6g0288091 Rosa chinensis HOM05D007363 ORTHO05D009018 6.2e-39 164.5 126 62.7
CSS0036840 Camellia sinensis var. sinensis HOM05D007363 ORTHO05D009018 1.1e-38 163.7 137 57.7
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 1.1e-38 163.7 122 63.9
PGSC0003DMG400020073 Solanum tuberosum HOM05D007363 ORTHO05D009018 1.1e-38 163.7 148 56.1
Thecc.01G258000 Theobroma cacao HOM05D007363 ORTHO05D009018 1.4e-38 163.3 121 64.5
VMungo1383G1059 Vigna mungo HOM05D007363 ORTHO05D009018 1.8e-38 162.9 145 57.9
ECA247G1846 Erigeron canadensis HOM05D007363 ORTHO05D009018 3.1e-38 162.2 140 55.0
Gohir.D07G155100 Gossypium hirsutum HOM05D007363 ORTHO05D009018 3.1e-38 162.2 120 65.0
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 3.1e-38 162.2 124 63.7
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 4.0e-38 161.8 141 58.9
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 5.3e-38 161.4 138 57.2
Rhsim01G0263400 Rhododendron simsii HOM05D007363 ORTHO05D009018 5.3e-38 161.4 140 59.3
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 6.9e-38 161.0 121 64.5
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 9.0e-38 160.6 154 54.5
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 1.2e-37 160.2 131 59.5
DCAR_000936 Daucus carota HOM05D007363 ORTHO05D009018 1.5e-37 159.8 144 55.6
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 1.5e-37 159.8 144 56.9
Lalb_Chr01g0019641 Lupinus albus HOM05D007363 ORTHO05D009018 1.5e-37 159.8 146 58.2
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 3.4e-37 158.7 142 53.5
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 4.5e-37 158.3 138 58.0
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 4.5e-37 158.3 127 57.5
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 7.6e-37 157.5 122 62.3
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 7.6e-37 157.5 122 62.3
Glyma.03G163300 Glycine max HOM05D007363 ORTHO05D009018 9.9e-37 157.1 149 55.7
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 9.9e-37 157.1 134 58.2
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 9.9e-37 157.1 125 59.2
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 9.9e-37 157.1 141 56.7
BcaB08g34913 Brassica carinata HOM05D007363 ORTHO05D009018 1.3e-36 156.8 139 56.8
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 1.7e-36 156.4 133 57.9
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 2.2e-36 156.0 122 57.4
BolC3t14048H Brassica oleracea HOM05D007363 ORTHO05D009018 2.2e-36 156.0 141 56.0
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 2.2e-36 156.0 161 53.4
A03p13820 Brassica napus HOM05D007363 ORTHO05D009018 3.8e-36 155.2 141 56.0
BcaC01g06392 Brassica carinata HOM05D007363 ORTHO05D009018 4.9e-36 154.8 141 55.3
C03p16260 Brassica napus HOM05D007363 ORTHO05D009018 4.9e-36 154.8 141 55.3
Carub.0003s3497 Capsella rubella HOM05D007363 ORTHO05D009018 8.4e-36 154.1 142 54.2
AT2G20515 Arabidopsis thaliana HOM05D007363 ORTHO05D009018 1.4e-35 153.3 141 53.9
BraA03t10685Z Brassica rapa HOM05D007363 ORTHO05D009018 1.4e-35 153.3 141 54.6
CARHR111060 Cardamine hirsuta HOM05D007363 ORTHO05D009018 1.4e-35 153.3 136 55.1
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 1.4e-35 153.3 152 53.3
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 3.2e-35 152.1 127 58.3
AL3G53530 Arabidopsis lyrata HOM05D007363 ORTHO05D009018 5.4e-35 151.4 141 53.9
BcaB01g04373 Brassica carinata HOM05D007363 ORTHO05D009018 5.4e-35 151.4 141 53.9
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 5.4e-35 151.4 161 50.9
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 9.3e-35 150.6 138 55.1
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 1.2e-34 150.2 121 57.9
Thhalv10002113m.g Eutrema salsugineum HOM05D007363 ORTHO05D009018 2.1e-34 149.4 140 55.0
Haze_24634 Corylus avellana HOM05D007363 ORTHO05D009018 2.7e-34 149.1 113 67.3
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 3.5e-34 148.7 133 55.6
Psat3g056960 Pisum sativum HOM05D007363 ORTHO05D009018 1.3e-33 146.7 141 54.6
unitig_0.g703 Utricularia gibba HOM05D007363 ORTHO05D009018 1.8e-33 146.4 143 51.0
Eucgr.K03259 Eucalyptus grandis HOM05D007363 ORTHO05D009018 1.1e-32 143.7 151 52.3
Eucgr.L02952 Eucalyptus grandis HOM05D007363 ORTHO05D009018 1.1e-32 143.7 151 52.3
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 1.5e-32 143.3 127 54.3
ClCG09G007810 Citrullus lanatus HOM05D007363 ORTHO05D009018 1.5e-32 143.3 151 49.7
SalBow6G5236 Salvia bowleyana HOM05D007363 ORTHO05D009018 4.3e-32 141.7 147 49.0
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 5.6e-32 141.4 145 51.0
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 2.8e-31 139.0 152 48.0
Sed0008485 Sechium edule HOM05D007363 ORTHO05D009018 2.8e-31 139.0 126 56.3
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 4.8e-31 138.3 109 62.4
MELO3C015729.2 Cucumis melo HOM05D007363 ORTHO05D009018 6.9e-30 134.4 145 49.0
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 2.6e-29 132.5 153 50.3
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 5.8e-29 131.3 122 51.6
Migut.N02204 Erythranthe guttata HOM05D007363 ORTHO05D009018 9.9e-29 130.6 160 46.9
Zm00001eb077670 Zea mays HOM05D007363 ORTHO05D009018 2.2e-28 129.4 126 51.6
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 4.2e-27 125.2 126 53.2
Hma1.2p1_0576F.1_g182040 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 5.5e-27 124.8 106 62.3
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 2.8e-23 112.5 117 48.7
Lj2P297T63 Lonicera japonica HOM05D007363 ORTHO05D009018 5.8e-21 104.8 97 54.6
FAN27G1204 Fragaria x ananassa HOM05D007363 ORTHO05D009018 2.2e-20 102.8 83 60.2
Lsat_1_v5_gn_3_73760 Lactuca sativa HOM05D007363 ORTHO05D009018 3.9e-17 92.0 105 43.8
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.4e-14 83.6 66 66.7
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 4.5e-13 78.6 108 38.9
Lj5P53T14 Lonicera japonica HOM05D007363 ORTHO05D009018 7.7e-13 77.8 77 53.2
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 7.2e-11 71.2 98 35.7
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 2.3e-09 66.2 100 34.0
Lj6P94T4 Lonicera japonica HOM05D007363 ORTHO05D009018 3.0e-09 65.9 58 58.6
Lj6P297T4 Lonicera japonica HOM05D007363 ORTHO05D009018 3.9e-09 65.5 58 60.3
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 8.8e-09 64.3 103 34.0
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.8e-06 56.6 110 29.1


User provided reference genes

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