Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1352.4 632 100.0
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1183.7 627 85.8
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1175.2 615 86.5
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1170.2 627 86.1
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1169.5 626 85.3
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1169.5 610 87.7
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1167.9 627 84.7
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1166.0 660 80.6
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1166.0 627 85.8
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1161.7 646 83.0
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1161.0 632 83.9
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1159.1 632 83.9
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1158.3 624 84.0
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1154.8 630 83.7
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1152.5 629 84.1
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1151.0 628 83.4
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1150.2 611 85.3
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1148.7 631 83.7
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1147.9 624 84.1
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1147.5 626 82.6
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1146.0 626 83.5
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1145.6 630 81.6
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1144.0 625 82.4
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1141.3 627 82.8
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1140.2 627 82.5
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 0.0e+00 1139.4 637 81.6
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1139.4 614 83.7
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 0.0e+00 1139.0 627 82.5
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1137.9 625 82.7
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1137.5 628 82.6
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 0.0e+00 1136.3 613 82.5
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1135.6 624 81.7
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1134.0 625 83.5
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 0.0e+00 1132.9 602 85.2
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1132.1 610 84.4
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1130.5 610 84.8
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1129.8 615 82.9
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1129.0 609 82.8
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1128.6 625 81.8
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1128.6 610 84.6
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 0.0e+00 1127.5 612 82.5
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1124.8 602 83.6
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 0.0e+00 1123.2 663 77.8
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 0.0e+00 1119.8 629 80.9
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 0.0e+00 1118.2 629 81.7
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 0.0e+00 1116.7 615 81.6
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 0.0e+00 1115.9 633 80.4
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 0.0e+00 1115.5 771 69.8
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1113.2 628 82.0
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 0.0e+00 1112.1 603 84.7
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 0.0e+00 1109.4 625 79.4
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 0.0e+00 1108.6 610 81.0
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 0.0e+00 1105.9 610 82.3
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1105.1 611 81.3
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 0.0e+00 1105.1 600 84.8
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 0.0e+00 1104.7 599 84.5
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 0.0e+00 1103.6 642 78.2
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1102.4 611 81.0
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1100.1 624 79.3
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1098.6 630 79.0
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1098.6 630 79.0
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1098.2 598 83.9
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1096.6 633 78.0
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 0.0e+00 1096.6 642 78.0
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1095.1 633 77.9
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 0.0e+00 1095.1 610 80.5
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1094.7 638 77.9
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 0.0e+00 1094.3 610 80.7
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 0.0e+00 1092.8 610 80.7
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1087.8 638 77.6
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 0.0e+00 1087.4 678 75.1
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 0.0e+00 1087.0 643 77.1
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1083.9 596 81.2
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.3e-312 1074.3 736 69.8
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 8.6e-312 1072.8 612 79.7
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 3.0e-311 1071.2 836 62.1
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 1.4e-308 1062.4 624 77.4
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 2.6e-307 1058.1 625 78.1
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 3.4e-307 1057.7 627 76.1
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 2.5e-302 1041.6 632 76.7
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 5.8e-299 1030.4 664 73.2
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 7.6e-299 1030.0 557 84.0
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.6e-296 1022.3 664 72.7
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 4.3e-294 1014.2 624 74.5
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 2.0e-291 1005.4 588 77.0
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 4.3e-286 987.6 558 81.0
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 4.8e-285 984.2 537 84.5
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 8.1e-285 983.4 575 80.7
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 9.9e-283 976.5 537 84.5
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 1.5e-278 962.6 550 78.5
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 4.3e-278 961.1 584 76.7
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 7.4e-278 960.3 541 81.0
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 1.3e-274 949.5 561 77.7
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 2.2e-274 948.7 532 83.3
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 4.9e-274 947.6 609 72.1
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.3e-271 939.5 619 71.2
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 4.3e-270 934.5 572 74.3
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 3.4e-267 924.9 602 72.6
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.0e-250 870.2 602 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 6.1e-248 860.9 607 64.7
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 4.4e-246 854.7 631 62.4
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.1e-233 813.5 638 60.2
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.0e-231 807.0 492 74.0
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 7.5e-230 800.8 617 60.3
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 2.9e-218 762.3 558 63.8
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 3.8e-218 761.9 454 78.0
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.2e-203 713.8 411 78.6
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 9.8e-198 694.1 463 70.6
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 1.3e-194 683.7 382 81.4
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 4.6e-187 658.7 424 73.6
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 8.6e-186 654.4 353 85.6
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 1.8e-135 487.3 246 87.0
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 5.3e-127 459.1 463 52.7
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 2.9e-117 426.8 237 83.5
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.4e-95 354.8 202 80.2
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 6.4e-88 329.3 188 76.6
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 1.6e-83 314.7 161 88.8
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.2e-72 277.7 207 66.2
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.4e-63 248.4 122 88.5
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 9.2e-63 245.7 130 83.1
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.6e-54 218.4 160 58.8
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 9.6e-52 209.1 345 38.3
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 1.8e-50 204.9 158 59.5
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 2.3e-45 188.0 105 80.0
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 2.1e-43 181.4 121 67.8
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 6.9e-42 176.4 83 91.6
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.6e-33 147.9 103 73.8
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 6.5e-32 143.3 87 71.3
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 7.9e-30 136.3 87 69.0
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 7.9e-30 136.3 87 69.0
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 4.3e-28 130.6 67 89.6
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.3e-27 129.0 149 47.7
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 4.8e-27 127.1 211 35.1
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 2.1e-22 111.7 66 78.8
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 2.3e-21 108.2 51 88.2
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.9e-21 107.5 82 68.3
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 8.8e-21 106.3 225 28.9
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 1.7e-19 102.1 205 29.8
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.8e-18 98.6 56 75.0
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.8e-18 98.6 56 75.0
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.1e-18 97.4 56 75.0
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 2.6e-17 94.7 211 26.5
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 2.6e-17 94.7 138 41.3
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.9e-17 93.6 56 71.4
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.9e-17 93.6 79 55.7
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 2.2e-16 91.7 79 57.0
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 6.5e-16 90.1 65 64.6
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.7e-14 84.7 51 72.5
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.7e-14 84.7 51 72.5
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 3.1e-10 71.2 32 78.1
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 2.7e-06 58.2 261 24.5
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 3.6e-06 57.8 261 24.5


User provided reference genes

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