Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.5e-161 572.8 282 100.0
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.3e-130 469.9 278 82.4
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 3.9e-130 468.4 278 83.1
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.1e-129 466.8 278 82.4
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 8.2e-128 460.7 272 82.4
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 1.2e-126 456.8 274 82.5
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.2e-126 456.8 255 87.1
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 5.8e-126 454.5 266 83.5
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 9.3e-124 447.2 277 79.1
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 3.5e-123 445.3 280 77.1
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.3e-122 443.4 254 83.1
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 5.1e-122 441.4 273 81.3
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.1e-121 440.3 278 77.3
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 5.7e-121 438.0 264 80.3
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.6e-120 436.4 268 78.4
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 3.7e-120 435.3 273 78.4
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.4e-119 433.3 278 76.6
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 1.4e-119 433.3 270 77.8
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.4e-119 433.3 258 81.0
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.4e-119 432.6 273 78.8
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 4.1e-119 431.8 270 77.0
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 4.1e-119 431.8 278 75.5
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 4.1e-119 431.8 278 75.2
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 9.0e-119 430.6 278 76.3
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.2e-118 430.3 277 77.3
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 1.5e-118 429.9 256 79.3
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.0e-118 429.5 238 86.6
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.6e-118 429.1 270 77.8
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 2.6e-118 429.1 261 78.5
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.4e-118 428.7 273 76.2
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 5.9e-118 427.9 268 76.5
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 2.2e-117 426.0 274 78.1
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 2.9e-117 425.6 248 82.3
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 8.5e-117 424.1 255 80.4
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 2.5e-116 422.5 261 76.2
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 2.5e-116 422.5 241 84.6
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 3.2e-116 422.2 251 79.7
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 3.2e-116 422.2 278 74.1
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 9.4e-116 420.6 278 76.6
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 3.6e-115 418.7 253 77.9
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 4.6e-115 418.3 253 77.9
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 6.1e-115 417.9 249 80.7
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 1.0e-114 417.2 245 82.0
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.0e-114 417.2 251 80.1
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.8e-114 416.4 253 77.1
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 3.9e-114 415.2 287 72.5
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 6.7e-114 414.5 251 79.3
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 6.7e-114 414.5 251 79.3
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.1e-113 413.7 271 75.3
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.5e-113 413.3 312 67.6
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 7.4e-113 411.0 250 79.2
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 9.7e-113 410.6 250 78.8
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 9.7e-113 410.6 250 79.2
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 9.7e-113 410.6 250 79.2
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 3.7e-112 408.7 290 71.4
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 3.7e-112 408.7 276 72.1
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 8.2e-112 407.5 246 78.5
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 4.1e-111 405.2 252 78.6
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 9.1e-111 404.1 254 76.0
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.5e-110 403.3 276 72.1
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 2.6e-110 402.5 253 76.3
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 2.6e-110 402.5 247 77.7
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 7.7e-110 401.0 291 71.5
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.3e-109 400.2 257 75.5
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.3e-109 400.2 257 75.5
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.3e-109 400.2 251 77.3
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 2.2e-109 399.4 258 75.6
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 2.9e-109 399.1 258 77.9
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.4e-108 396.7 261 73.9
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 2.5e-108 396.0 274 72.3
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 2.5e-108 396.0 249 76.3
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.2e-107 393.7 267 72.3
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 3.3e-105 385.6 255 74.5
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 3.3e-105 385.6 269 71.0
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.4e-105 385.2 264 71.6
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 7.4e-105 384.4 268 71.3
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.7e-104 382.1 266 69.5
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 3.7e-104 382.1 250 76.0
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.4e-103 380.2 248 74.6
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 3.1e-103 379.0 271 68.3
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 5.3e-103 378.3 271 69.7
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 9.1e-103 377.5 257 73.9
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 9.1e-103 377.5 253 72.3
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 4.5e-102 375.2 266 68.4
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 3.6e-99 365.5 238 72.3
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 8.8e-98 360.9 197 87.3
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.0e-93 347.4 206 79.6
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 2.9e-93 345.9 268 65.3
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 6.1e-91 338.2 256 66.4
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.0e-90 337.4 259 66.0
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 9.8e-89 330.9 276 60.1
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.1e-87 325.5 302 60.6
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 7.0e-87 324.7 302 59.9
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.6e-86 323.6 273 60.4
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 1.0e-85 320.9 281 61.9
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.5e-84 317.0 168 88.1
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 3.2e-84 315.8 250 64.8
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 9.4e-84 314.3 195 78.5
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 1.2e-83 313.9 261 60.5
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 2.1e-83 313.2 255 61.6
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 2.0e-81 306.6 238 64.3
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 3.4e-81 305.8 254 63.0
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 4.5e-78 295.4 265 59.2
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.5e-76 290.4 250 59.6
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.8e-74 283.5 260 53.5
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.0e-73 280.0 252 58.7
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 5.7e-73 278.5 243 60.9
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 6.6e-69 265.0 166 74.7
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 5.2e-66 255.4 346 48.3
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.9e-63 246.9 156 73.1
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 7.3e-60 235.0 172 69.8
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 2.8e-59 233.0 290 46.9
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 9.8e-57 224.6 239 51.5
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.6e-54 217.2 259 45.9
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 2.8e-51 206.5 214 51.4
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 1.3e-45 187.6 250 43.2
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 5.1e-45 185.7 114 76.3
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 4.0e-42 176.0 128 69.5
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 2.9e-40 169.9 162 56.2
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-34 151.4 85 82.4
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 9.3e-31 138.3 101 65.3
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 5.1e-29 132.5 76 84.2
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 4.3e-28 129.4 131 53.4
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 6.0e-22 109.0 84 61.9
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 3.1e-18 96.7 84 59.5
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 9.0e-18 95.1 185 34.1
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 8.4e-16 88.6 73 60.3
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 6.0e-14 82.4 39 92.3
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 1.3e-13 81.3 74 54.1
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 1.1e-12 78.2 66 59.1
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 2.8e-11 73.6 37 91.9
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 2.8e-11 73.6 37 91.9
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 5.9e-09 65.9 56 57.1
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 7.6e-09 65.5 56 62.5
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.2e-06 58.2 40 62.5


User provided reference genes

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