Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc162.5 Carica papaya HOM05D007517 ORTHO05D006922 1.9e-56 222.2 111 100.0
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 1.9e-19 99.4 98 57.1
Dinv30121 Davidia involucrata HOM05D007517 ORTHO05D006922 5.5e-19 97.8 96 57.3
Potri.019G013000 Populus trichocarpa HOM05D007517 ORTHO05D006922 7.1e-19 97.4 107 51.4
Potri.013G043600 Populus trichocarpa HOM05D007517 ORTHO05D006922 1.6e-18 96.3 107 50.5
COL.COLO4_15407 Corchorus olitorius HOM05D007517 ORTHO05D006922 2.7e-18 95.5 95 57.9
Gorai.013G186200 Gossypium raimondii HOM05D007517 ORTHO05D006922 1.0e-17 93.6 103 52.4
Rhsim05G0176100 Rhododendron simsii HOM05D007517 ORTHO05D006922 6.7e-17 90.9 108 49.1
Gohir.A13G169025 Gossypium hirsutum HOM05D007517 ORTHO05D006922 8.7e-17 90.5 102 51.0
Potri.019G012700 Populus trichocarpa HOM05D007517 ORTHO05D006922 4.3e-16 88.2 107 47.7
Potri.019G012400 Populus trichocarpa HOM05D007517 ORTHO05D006922 7.4e-16 87.4 108 48.1
Rhsim05G0177900 Rhododendron simsii HOM05D007517 ORTHO05D006922 7.4e-16 87.4 108 47.2
Sabra13G0039900 Salix brachista HOM05D007517 ORTHO05D006922 2.2e-15 85.9 107 46.7
Glyma.03G248900 Glycine max HOM05D007517 ORTHO05D006922 4.8e-15 84.7 105 41.9
Thecc.05G277600 Theobroma cacao HOM05D007517 ORTHO05D006922 4.8e-15 84.7 68 64.7
CAN.G1256.1 Capsicum annuum HOM05D014319 ORTHO05D006922 1.4e-14 83.2 112 44.6
CsaV3_2G003890 Cucumis sativus L. HOM05D017963 ORTHO05D020474 2.4e-14 82.4 90 47.8
Potri.019G012702 Populus trichocarpa HOM05D007517 ORTHO05D006922 3.1e-14 82.0 107 48.6
Thecc.01G263600 Theobroma cacao HOM05D007517 ORTHO05D006922 3.1e-14 82.0 112 49.1
Lj1g0011629 Lotus japonicus HOM05D007517 ORTHO05D006922 5.3e-14 81.3 98 45.9
Lalb_Chr21g0311071 Lupinus albus HOM05D007517 ORTHO05D006922 5.3e-14 81.3 74 52.7
Aqoxy5G00299 Aquilegia oxysepala HOM05D007517 ORTHO05D006922 6.9e-14 80.9 92 41.3
Sabra13G0040000 Salix brachista HOM05D007517 ORTHO05D006922 1.2e-13 80.1 91 48.4
Sabra13G0040100 Salix brachista HOM05D007517 ORTHO05D006922 1.2e-13 80.1 91 48.4
Sabra13G0040200 Salix brachista HOM05D007517 ORTHO05D006922 1.2e-13 80.1 91 48.4
Sabra13G0040300 Salix brachista HOM05D007517 ORTHO05D006922 1.2e-13 80.1 91 48.4
Potri.019G012900 Populus trichocarpa HOM05D007517 ORTHO05D006922 3.4e-13 78.6 107 46.7
Atru.chr2.874 Acer truncatum HOM05D007517 ORTHO05D006922 4.5e-13 78.2 65 61.5
PGSC0003DMG400000987 Solanum tuberosum HOM05D014319 ORTHO05D006922 4.5e-13 78.2 114 43.0
Atru.chr2.879 Acer truncatum HOM05D007517 ORTHO05D006922 5.9e-13 77.8 65 63.1
Gohir.D08G233850 Gossypium hirsutum HOM05D007517 ORTHO05D006922 1.3e-12 76.6 71 57.7
Gorai.004G248500 Gossypium raimondii HOM05D007517 ORTHO05D006922 1.3e-12 76.6 71 57.7
Gohir.A08G216801 Gossypium hirsutum HOM05D007517 ORTHO05D006922 2.2e-12 75.9 70 58.6
Potri.019G012603 Populus trichocarpa HOM05D007517 ORTHO05D006922 2.2e-12 75.9 76 53.9
Duzib133G0625 Durio zibethinus HOM05D007517 ORTHO05D006922 2.9e-12 75.5 97 47.4
Sc05g0000830 Simmondsia chinensis HOM05D007517 ORTHO05D006922 2.9e-12 75.5 117 41.9
COL.COLO4_15804 Corchorus olitorius HOM05D007967 ORTHO05D008195 3.8e-12 75.1 91 47.3
Glyma.19G246500 Glycine max HOM05D007517 ORTHO05D006922 3.8e-12 75.1 93 45.2
Potri.019G012601 Populus trichocarpa HOM05D007517 ORTHO05D006922 3.8e-12 75.1 107 45.8
Atru.chr2.873 Acer truncatum HOM05D007517 ORTHO05D006922 6.5e-12 74.3 87 49.4
Sabra19G0025500 Salix brachista HOM05D007517 ORTHO05D006922 8.5e-12 73.9 106 46.2
Sopen11g002160 Solanum pennellii HOM05D014319 ORTHO05D006922 8.5e-12 73.9 112 42.9
Nitab4.5_0005247g0020 Nicotiana tabacum HOM05D014319 ORTHO05D006922 1.1e-11 73.6 122 43.4
Phvul.006G103600 Phaseolus vulgaris HOM05D007517 ORTHO05D006922 2.5e-11 72.4 68 52.9
CiPaw.03G260800 Carya illinoinensis HOM05D007517 ORTHO05D006922 3.2e-11 72.0 86 40.7
ClCG02G016880 Citrullus lanatus HOM05D017963 ORTHO05D020474 3.2e-11 72.0 109 39.4
TAR362G0007 Trochodendron aralioides HOM05D007967 ORTHO05D008195 3.2e-11 72.0 89 40.4
MELO3C004406.2 Cucumis melo HOM05D017963 ORTHO05D020474 4.2e-11 71.6 81 46.9
Sabra19G0025300 Salix brachista HOM05D007517 ORTHO05D006922 4.2e-11 71.6 87 48.3
TAR636G0109 Trochodendron aralioides HOM05D007967 ORTHO05D008195 4.2e-11 71.6 90 40.0
Gohir.D08G070066 Gossypium hirsutum HOM05D007517 ORTHO05D006922 5.5e-11 71.2 84 51.2
Gorai.004G073800 Gossypium raimondii HOM05D007517 ORTHO05D006922 5.5e-11 71.2 84 51.2
FAN05G1682 Fragaria x ananassa HOM05D017677 ORTHO05D006922 7.2e-11 70.9 111 47.7
FAN05G2017 Fragaria x ananassa HOM05D017677 ORTHO05D006922 7.2e-11 70.9 111 47.7
Gohir.D11G134500 Gossypium hirsutum HOM05D007517 ORTHO05D006922 7.2e-11 70.9 94 46.8
Gorai.007G143900 Gossypium raimondii HOM05D007517 ORTHO05D006922 7.2e-11 70.9 94 46.8
Solyc11g006240.2 Solanum lycopersicum HOM05D014319 ORTHO05D006922 7.2e-11 70.9 112 40.2
Gohir.A08G060866 Gossypium hirsutum HOM05D007517 ORTHO05D006922 9.4e-11 70.5 84 51.2
Peaxi162Scf00519g00016 Petunia axillaris HOM05D014319 ORTHO05D006922 9.4e-11 70.5 96 43.8
ClCG07G000800 Citrullus lanatus HOM05D007517 ORTHO05D006922 1.2e-10 70.1 101 45.5
COL.COLO4_05587 Corchorus olitorius HOM05D007517 ORTHO05D006922 1.6e-10 69.7 75 48.0
FAN09G4351 Fragaria x ananassa HOM05D017677 ORTHO05D006922 1.6e-10 69.7 111 47.7
Sabra19G0017200 Salix brachista HOM05D007517 ORTHO05D006922 1.6e-10 69.7 77 51.9
Atru.chr5.1625 Acer truncatum HOM05D007517 ORTHO05D006922 2.1e-10 69.3 93 41.9
ATR0665G553 Amborella trichopoda HOM05D007967 ORTHO05D008195 2.1e-10 69.3 83 49.4
FvH4_6g02480 Fragaria vesca HOM05D017677 ORTHO05D006922 2.7e-10 68.9 110 47.3
FAN14G2793 Fragaria x ananassa HOM05D017677 ORTHO05D006922 2.7e-10 68.9 110 47.3
FAN14G4694 Fragaria x ananassa HOM05D017677 ORTHO05D006922 3.6e-10 68.6 99 49.5
Gohir.A11G128700 Gossypium hirsutum HOM05D007517 ORTHO05D006922 3.6e-10 68.6 94 45.7
Sabra19G0017300 Salix brachista HOM05D007517 ORTHO05D006922 3.6e-10 68.6 106 44.3
Sed0019282 Sechium edule HOM05D017963 ORTHO05D020474 4.6e-10 68.2 108 41.7
Sabra19G0017100 Salix brachista HOM05D007517 ORTHO05D006922 6.1e-10 67.8 107 44.9
Sabra19G0026100 Salix brachista HOM05D007517 ORTHO05D006922 6.1e-10 67.8 107 44.9
TWI12G0979 Tripterygium wilfordii HOM05D007517 ORTHO05D006922 6.1e-10 67.8 77 48.1
CiPaw.01G189400 Carya illinoinensis HOM05D007967 ORTHO05D008195 1.0e-09 67.0 92 45.7
Glyma.20G226400 Glycine max HOM05D007517 ORTHO05D006922 1.0e-09 67.0 63 52.4
FAN02G2589 Fragaria x ananassa HOM05D017677 ORTHO05D006922 1.4e-09 66.6 110 46.4
Manes.03G168300 Manihot esculenta HOM05D007967 ORTHO05D008195 1.4e-09 66.6 92 40.2
TPR.G27065 Trifolium pratense HOM05D007517 ORTHO05D006922 1.4e-09 66.6 88 43.2
Cfa002378 Carpinus fangiana HOM05D007517 ORTHO05D006922 1.8e-09 66.2 68 51.5
Potri.010G075100 Populus trichocarpa HOM05D007967 ORTHO05D008195 1.8e-09 66.2 90 48.9
Duzib212G0013 Durio zibethinus HOM05D007517 ORTHO05D006922 3.0e-09 65.5 90 46.7
MELO3C024042.2 Cucumis melo HOM05D007517 ORTHO05D006922 3.9e-09 65.1 51 62.7
QL10p016305 Quercus lobata HOM05D007517 ORTHO05D006922 3.9e-09 65.1 60 51.7
TAR406G0009 Trochodendron aralioides HOM05D007967 ORTHO05D008195 3.9e-09 65.1 69 44.9
Atru.chr2.872 Acer truncatum HOM05D007517 ORTHO05D006922 5.1e-09 64.7 41 65.9
Haze_24578 Corylus avellana HOM05D007517 ORTHO05D006922 5.1e-09 64.7 68 51.5
Glyma.10G164000 Glycine max HOM05D007517 ORTHO05D006922 5.1e-09 64.7 63 50.8
TAR636G2334 Trochodendron aralioides HOM05D007967 ORTHO05D008195 5.1e-09 64.7 83 42.2
Migut.F00819 Erythranthe guttata HOM05D014319 ORTHO05D006922 6.7e-09 64.3 71 52.1
Potri.008G163000 Populus trichocarpa HOM05D007517 ORTHO05D006922 6.7e-09 64.3 87 41.4
Sed0014661 Sechium edule HOM05D007517 ORTHO05D006922 6.7e-09 64.3 84 42.9
DCAR_002343 Daucus carota HOM05D007517 ORTHO05D006922 8.8e-09 63.9 84 47.6
Potri.008G163100 Populus trichocarpa HOM05D007517 ORTHO05D006922 1.1e-08 63.5 82 46.3
Oeu016033.1 Olea europaea HOM05D014319 ORTHO05D006922 1.5e-08 63.2 103 40.8
Potri.008G160650 Populus trichocarpa HOM05D007517 ORTHO05D006922 1.5e-08 63.2 82 46.3
QL10p016371 Quercus lobata HOM05D007517 ORTHO05D006922 1.5e-08 63.2 60 48.3
QL10p016395 Quercus lobata HOM05D007517 ORTHO05D006922 1.5e-08 63.2 60 48.3
Sed0011700 Sechium edule HOM05D007517 ORTHO05D006922 1.5e-08 63.2 88 43.2
ATR0665G471 Amborella trichopoda HOM05D007967 ORTHO05D008195 1.9e-08 62.8 83 45.8
Ciclev10006313m.g Citrus clementina HOM05D007967 ORTHO05D008195 1.9e-08 62.8 60 51.7
Potri.010G075133 Populus trichocarpa HOM05D007517 ORTHO05D006922 1.9e-08 62.8 82 42.7
Sed0018312 Sechium edule HOM05D007517 ORTHO05D006922 1.9e-08 62.8 84 44.0
Gohir.A02G036500 Gossypium hirsutum HOM05D007967 ORTHO05D008195 2.5e-08 62.4 91 42.9
Sabra08G0124500 Salix brachista HOM05D007517 ORTHO05D006922 2.5e-08 62.4 71 46.5
Manes.15G037400 Manihot esculenta HOM05D007967 ORTHO05D008195 3.3e-08 62.0 92 40.2
ClCG07G000810 Citrullus lanatus HOM05D007517 ORTHO05D006922 4.3e-08 61.6 74 45.9
Gohir.A09G113250 Gossypium hirsutum HOM05D013101 ORTHO05D006922 4.3e-08 61.6 86 43.0
Gohir.D02G043100 Gossypium hirsutum HOM05D007967 ORTHO05D008195 4.3e-08 61.6 91 42.9
Prupe.1G033100 Prunus persica HOM05D007967 ORTHO05D008195 4.3e-08 61.6 96 37.5
QL10p016326 Quercus lobata HOM05D007517 ORTHO05D006922 4.3e-08 61.6 60 46.7
Cfa008369 Carpinus fangiana HOM05D007967 ORTHO05D008195 7.4e-08 60.8 93 45.2
Phvul.007G189000 Phaseolus vulgaris HOM05D007517 ORTHO05D006922 7.4e-08 60.8 73 49.3
Thecc.04G247500 Theobroma cacao HOM05D013101 ORTHO05D006922 7.4e-08 60.8 86 45.3
Haze_11312 Corylus avellana HOM05D007967 ORTHO05D008195 1.3e-07 60.1 57 56.1
Gorai.005G047500 Gossypium raimondii HOM05D007967 ORTHO05D008195 1.3e-07 60.1 91 41.8
Gorai.006G127500 Gossypium raimondii HOM05D013101 ORTHO05D006922 1.3e-07 60.1 87 42.5
Dinv44645 Davidia involucrata HOM05D007517 ORTHO05D006922 1.7e-07 59.7 107 37.4
Nn3g19573 Nelumbo nucifera HOM05D007967 ORTHO05D008195 1.7e-07 59.7 83 38.6
Sed0006980 Sechium edule HOM05D017963 ORTHO05D020474 1.7e-07 59.7 110 43.6
Gohir.A11G250350 Gossypium hirsutum HOM05D022983 ORTHO05D006922 2.2e-07 59.3 61 54.1
Gorai.007G279400 Gossypium raimondii HOM05D022983 ORTHO05D006922 2.2e-07 59.3 61 52.5
Cfa008371 Carpinus fangiana HOM05D007967 ORTHO05D008195 2.8e-07 58.9 57 56.1
Glyma.10G188900 Glycine max HOM05D007967 ORTHO05D008195 2.8e-07 58.9 87 40.2
Gohir.A09G017400 Gossypium hirsutum HOM05D022983 ORTHO05D006922 3.7e-07 58.5 74 48.6
Gohir.D11G260800 Gossypium hirsutum HOM05D022983 ORTHO05D006922 3.7e-07 58.5 61 52.5
Potri.002G041950 Populus trichocarpa HOM05D007517 ORTHO05D006922 3.7e-07 58.5 85 43.5
Potri.008G162900 Populus trichocarpa HOM05D007517 ORTHO05D006922 3.7e-07 58.5 71 49.3
Potri.008G163200 Populus trichocarpa HOM05D007967 ORTHO05D008195 4.8e-07 58.2 90 44.4
Thecc.04G247400 Theobroma cacao HOM05D013101 ORTHO05D006922 4.8e-07 58.2 99 40.4
TWI12G0012 Tripterygium wilfordii HOM05D007967 ORTHO05D008195 4.8e-07 58.2 86 40.7
Nitab4.5_0006331g0020 Nicotiana tabacum HOM05D014319 ORTHO05D006922 6.3e-07 57.8 68 48.5
Medtr7g115360 Medicago truncatula HOM05D007517 ORTHO05D006922 8.2e-07 57.4 74 44.6
Nn5g27498 Nelumbo nucifera HOM05D013994 ORTHO05D008195 8.2e-07 57.4 100 45.0
Cpa.g.sc44.111 Carica papaya HOM05D007967 ORTHO05D008195 1.1e-06 57.0 92 41.3
Thecc.04G247600 Theobroma cacao HOM05D007967 ORTHO05D008195 1.1e-06 57.0 92 42.4
QL06p015921 Quercus lobata HOM05D007967 ORTHO05D008195 1.4e-06 56.6 95 42.1
Sabra05G0170200 Salix brachista HOM05D007517 ORTHO05D006922 1.4e-06 56.6 84 39.3
Thecc.04G247200 Theobroma cacao HOM05D013101 ORTHO05D006922 1.4e-06 56.6 106 37.7
Medtr1g073770 Medicago truncatula HOM05D007967 ORTHO05D008195 1.8e-06 56.2 87 40.2
Aqoxy5G00298 Aquilegia oxysepala HOM05D007967 ORTHO05D008195 2.4e-06 55.8 64 48.4
Sabra02G0033700 Salix brachista HOM05D007517 ORTHO05D006922 2.4e-06 55.8 91 40.7
Oeu002597.1 Olea europaea HOM05D007967 ORTHO05D008195 3.1e-06 55.5 81 38.3
Oeu002599.1 Olea europaea HOM05D007967 ORTHO05D008195 3.1e-06 55.5 81 38.3
Migut.N00247 Erythranthe guttata HOM05D021811 ORTHO05D029314 4.1e-06 55.1 90 36.7
Potri.001G380300 Populus trichocarpa HOM05D007517 ORTHO05D006922 4.1e-06 55.1 85 41.2
COL.COLO4_05588 Corchorus olitorius HOM05D013698 ORTHO05D008195 5.3e-06 54.7 83 42.2
DCAR_002342 Daucus carota HOM05D007517 ORTHO05D006922 5.3e-06 54.7 67 47.8
Gohir.D09G109900 Gossypium hirsutum HOM05D013101 ORTHO05D006922 5.3e-06 54.7 71 45.1
Rhsim04G0189300 Rhododendron simsii HOM05D007967 ORTHO05D008195 5.3e-06 54.7 96 42.7
Medtr1g080510 Medicago truncatula HOM05D007517 ORTHO05D006922 6.9e-06 54.3 81 39.5
Potri.005G221200 Populus trichocarpa HOM05D007517 ORTHO05D006922 6.9e-06 54.3 61 44.3
Cfa002385 Carpinus fangiana HOM05D013698 ORTHO05D008195 9.1e-06 53.9 80 38.8
Migut.G00444 Erythranthe guttata HOM05D007967 ORTHO05D008195 9.1e-06 53.9 79 43.0
Glyma.20G201800 Glycine max HOM05D007967 ORTHO05D008195 9.1e-06 53.9 95 36.8
Gohir.D13G031800 Gossypium hirsutum HOM05D022983 ORTHO05D006922 9.1e-06 53.9 85 42.4
Sabra10G0033700 Salix brachista HOM05D007967 ORTHO05D008195 9.1e-06 53.9 73 49.3
Sed0025928 Sechium edule HOM05D017963 ORTHO05D020474 9.1e-06 53.9 57 54.4


User provided reference genes

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