Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 2.3e-251 871.7 423 100.0
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 1.5e-146 523.5 409 63.8
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 1.8e-142 510.0 408 62.7
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 4.5e-138 495.4 406 61.6
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 7.4e-133 478.0 406 59.4
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 1.1e-131 474.2 413 60.3
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 5.0e-129 465.3 407 58.0
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 8.5e-129 464.5 407 57.5
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.1e-128 464.2 407 57.7
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.4e-128 463.8 414 57.5
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 5.5e-128 461.8 413 59.6
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 7.9e-127 458.0 429 56.6
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 1.8e-126 456.8 406 57.9
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 3.3e-125 452.6 409 60.4
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 4.4e-125 452.2 411 57.7
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 4.4e-125 452.2 409 60.4
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.4e-125 451.4 405 57.5
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 7.4e-125 451.4 359 63.0
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 6.3e-124 448.4 416 55.0
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 8.2e-124 448.0 408 55.4
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 8.2e-124 448.0 407 56.8
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 5.0e-121 438.7 410 55.6
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 3.9e-118 429.1 410 56.3
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 3.9e-118 429.1 412 54.4
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 3.9e-118 429.1 411 55.2
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 3.3e-117 426.0 373 59.5
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 3.3e-117 426.0 409 51.8
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 1.3e-116 424.1 409 52.3
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 3.7e-116 422.5 409 51.3
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 4.1e-115 419.1 409 51.8
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 2.6e-114 416.4 419 51.8
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.0e-113 414.5 408 57.1
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 3.8e-113 412.5 388 55.4
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 6.5e-113 411.8 406 52.5
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 1.9e-112 410.2 409 53.5
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 3.2e-112 409.5 412 51.5
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.2e-111 407.5 391 55.0
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 1.6e-111 407.1 411 52.1
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 4.7e-111 405.6 411 53.0
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.7e-111 405.6 407 53.1
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.3e-110 403.3 405 54.1
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 2.3e-110 403.3 413 51.8
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 8.8e-110 401.4 407 51.1
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.8e-110 401.4 405 53.6
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 8.8e-110 401.4 412 52.4
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 1.2e-109 401.0 411 52.8
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 1.5e-109 400.6 403 52.4
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 1.5e-109 400.6 403 52.4
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 2.0e-109 400.2 410 51.7
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 2.0e-109 400.2 410 51.7
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 2.6e-109 399.8 381 54.6
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 3.3e-109 399.4 403 52.6
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 7.5e-109 398.3 411 50.9
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 7.5e-109 398.3 410 51.7
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 7.5e-109 398.3 404 51.5
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 9.7e-109 397.9 403 52.1
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 1.4e-107 394.0 405 51.6
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 3.1e-107 392.9 414 51.9
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 4.5e-106 389.0 414 51.7
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 7.7e-106 388.3 404 50.5
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 3.8e-105 386.0 406 49.3
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 6.5e-105 385.2 445 48.5
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 2.5e-104 383.3 407 51.1
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 5.5e-104 382.1 411 52.3
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 6.8e-102 375.2 438 47.9
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 2.0e-101 373.6 408 49.0
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 4.4e-101 372.5 396 52.8
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 5.7e-101 372.1 441 46.7
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 3.7e-100 369.4 438 47.9
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 1.4e-99 367.5 405 49.6
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 4.1e-99 365.9 424 49.3
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 5.4e-99 365.5 413 48.7
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 9.1e-99 364.8 425 47.5
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 1.2e-98 364.4 373 52.5
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 4.5e-98 362.5 399 50.4
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 3.8e-97 359.4 376 52.1
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 3.3e-96 356.3 414 48.1
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 4.2e-96 355.9 377 49.1
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 1.6e-95 354.0 491 41.8
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 3.6e-95 352.8 383 49.3
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 3.6e-95 352.8 383 49.3
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 8.0e-95 351.7 373 50.1
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.3e-94 350.1 406 48.3
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 4.0e-94 349.4 308 57.8
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 7.5e-93 345.1 407 46.4
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 9.8e-93 344.7 415 45.1
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 2.8e-92 343.2 409 45.5
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 1.1e-91 341.3 405 46.7
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.1e-91 341.3 416 46.2
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 4.1e-91 339.3 401 46.6
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 7.0e-91 338.6 274 62.0
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 2.0e-90 337.0 291 60.5
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 8.6e-89 331.6 415 47.0
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 8.6e-89 331.6 381 48.8
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 1.9e-88 330.5 431 44.1
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.6e-87 327.4 401 46.1
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 4.7e-87 325.9 415 43.9
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 2.0e-82 310.5 387 46.8
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 2.7e-82 310.1 292 57.5
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 4.6e-82 309.3 358 48.3
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 5.0e-81 305.8 350 46.9
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 1.6e-79 300.8 293 52.2
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.4e-78 297.7 413 43.6
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 4.9e-76 289.3 255 58.4
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.1e-73 279.3 245 58.0
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 3.3e-72 276.6 254 55.5
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 2.1e-71 273.9 482 36.7
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 1.3e-68 264.6 253 54.9
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 4.4e-61 239.6 294 44.6
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.5e-58 229.9 401 36.9
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 7.8e-58 228.8 172 62.2
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 3.4e-53 213.4 412 35.0
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 3.8e-52 209.9 429 35.4
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 8.4e-52 208.8 241 45.2
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 3.2e-51 206.8 430 32.6
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 7.1e-51 205.7 196 54.6
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 1.1e-48 198.4 295 39.3
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 5.3e-46 189.5 306 37.6
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 1.9e-43 181.0 210 48.6
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 5.4e-43 179.5 165 53.9
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 2.7e-42 177.2 341 35.2
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 1.3e-39 168.3 195 48.2
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 2.4e-38 164.1 209 44.5
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 4.5e-37 159.8 226 43.4
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 4.5e-37 159.8 226 43.4
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 4.5e-37 159.8 456 28.9
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 8.4e-36 155.6 182 49.5
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 3.3e-32 143.7 220 40.0
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 1.8e-30 137.9 388 30.7
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 2.4e-30 137.5 166 46.4
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 1.5e-29 134.8 168 48.2
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 3.4e-29 133.7 118 55.1
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 2.2e-28 131.0 164 42.7
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 2.9e-28 130.6 128 53.9
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 3.8e-28 130.2 183 38.8
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 4.9e-28 129.8 261 32.6
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 3.5e-26 123.6 133 50.4
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 8.7e-25 119.0 165 42.4
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 5.0e-20 103.2 103 50.5
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 3.0e-17 94.0 148 38.5
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 9.7e-16 89.0 94 50.0
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 3.7e-15 87.0 66 57.6
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 8.2e-15 85.9 125 41.6
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 6.5e-12 76.3 150 34.0
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 1.9e-11 74.7 98 43.9
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 4.2e-11 73.6 105 44.8
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 2.3e-09 67.8 75 49.3
Oeu012237.1 Olea europaea HOM05D004964 ORTHO05D005918 1.3e-07 62.0 70 41.4
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 6.3e-07 59.7 166 28.9
MD12G1248900 Malus domestica HOM05D004964 ORTHO05D005918 1.4e-06 58.5 59 50.8
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 7.0e-06 56.2 185 27.0


User provided reference genes

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