Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 2.1e-250 868.6 447 100.0
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 4.5e-173 611.7 453 70.4
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 2.9e-172 609.0 449 71.3
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 1.2e-170 603.6 459 67.5
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 2.8e-170 602.4 448 70.5
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 5.2e-169 598.2 446 70.9
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 3.4e-168 595.5 448 70.5
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 2.2e-167 592.8 457 70.5
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 3.7e-167 592.0 459 69.3
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 3.7e-167 592.0 457 70.5
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 6.3e-167 591.3 450 66.7
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 6.3e-167 591.3 456 68.4
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 1.1e-166 590.5 450 67.3
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 1.4e-166 590.1 439 70.2
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.8e-166 589.7 449 66.6
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 9.2e-166 587.4 427 71.4
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 2.0e-165 586.3 446 70.0
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 4.5e-165 585.1 454 66.5
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 7.8e-165 584.3 446 69.7
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.3e-164 583.6 450 65.8
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 2.3e-164 582.8 426 71.1
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 2.6e-160 569.3 392 74.2
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 4.9e-159 565.1 422 68.0
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 4.1e-158 562.0 446 67.0
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 1.2e-157 560.5 451 67.0
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 3.0e-156 555.8 444 63.7
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 1.1e-155 553.9 451 66.1
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 4.3e-155 552.0 453 65.1
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.3e-155 551.2 388 69.6
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 1.6e-154 550.1 449 64.4
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 1.1e-153 547.4 433 67.2
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 6.8e-153 544.7 433 65.1
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 3.4e-152 542.3 413 67.1
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 1.7e-151 540.0 447 62.9
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 2.3e-148 529.6 455 62.9
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 6.6e-148 528.1 458 62.7
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 1.5e-147 526.9 458 63.3
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 2.9e-143 512.7 439 60.6
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 1.9e-142 510.0 416 63.7
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 7.1e-142 508.1 454 60.6
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 3.0e-140 502.7 451 61.2
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 3.9e-140 502.3 415 63.6
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.5e-139 500.4 451 60.5
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.9e-139 500.0 449 59.9
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 9.5e-139 497.7 449 61.7
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.1e-138 496.5 450 60.4
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.1e-138 496.5 450 60.4
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 2.8e-138 496.1 411 60.8
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 4.7e-138 495.4 449 59.7
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 7.6e-136 488.0 450 59.8
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 9.9e-136 487.6 450 59.8
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 9.9e-136 487.6 450 59.8
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 1.7e-135 486.9 393 61.3
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 2.2e-135 486.5 450 60.2
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 2.9e-135 486.1 450 59.6
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 2.9e-135 486.1 393 61.3
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 3.8e-135 485.7 452 59.5
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 8.4e-135 484.6 450 59.3
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 8.4e-135 484.6 450 59.3
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 1.1e-134 484.2 447 60.2
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 7.1e-134 481.5 452 57.7
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 9.2e-134 481.1 446 58.1
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 1.2e-133 480.7 449 59.9
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.0e-132 477.6 457 57.3
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 3.9e-132 475.7 398 63.1
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 3.9e-132 475.7 456 58.1
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 5.1e-132 475.3 395 61.3
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 3.3e-131 472.6 456 57.9
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 7.3e-131 471.5 456 58.6
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 7.3e-131 471.5 449 58.8
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 7.3e-131 471.5 461 57.3
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 9.6e-131 471.1 440 59.8
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 1.6e-130 470.3 409 61.4
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.8e-130 469.5 459 58.0
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 4.7e-130 468.8 451 58.8
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 1.1e-129 467.6 454 57.9
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 2.4e-129 466.5 445 58.2
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 1.5e-128 463.8 329 69.0
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 3.4e-128 462.6 469 55.7
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 9.9e-128 461.1 467 55.0
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 1.3e-127 460.7 455 57.1
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 4.2e-126 455.7 403 61.0
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 7.1e-126 454.9 457 56.2
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 9.3e-126 454.5 462 56.5
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 3.9e-124 449.1 454 56.6
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 1.1e-123 447.6 395 58.5
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 2.8e-122 443.0 456 56.4
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 2.8e-122 443.0 456 56.4
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 1.5e-120 437.2 463 54.0
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 3.4e-120 436.0 413 55.0
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.1e-118 431.0 465 53.3
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 5.4e-118 428.7 438 56.4
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 3.0e-116 422.9 460 52.0
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 3.0e-116 422.9 397 58.7
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 8.7e-116 421.4 343 60.3
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 1.9e-115 420.2 347 62.8
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 2.1e-114 416.8 417 53.5
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 1.1e-113 414.5 463 52.9
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 1.2e-109 401.0 464 49.6
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 5.1e-108 395.6 346 57.5
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 6.9e-105 385.2 413 53.8
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 1.2e-104 384.4 418 52.9
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 5.8e-104 382.1 446 51.3
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 1.9e-102 377.1 303 67.7
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 4.1e-97 359.4 405 51.1
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 2.2e-95 353.6 337 57.6
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 1.5e-88 330.9 255 66.3
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 6.1e-85 318.9 228 68.4
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 5.1e-84 315.8 364 53.0
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 7.4e-83 312.0 431 45.0
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.0e-80 303.9 364 51.6
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 3.0e-76 290.0 299 57.9
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 5.7e-75 285.8 416 43.8
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 3.7e-74 283.1 397 45.3
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.2e-69 268.1 448 44.4
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 4.0e-68 263.1 225 62.2
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 2.9e-63 246.9 262 51.9
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.6e-53 214.5 395 38.2
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 2.8e-53 213.8 395 38.0
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 3.2e-49 200.3 445 33.5
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 9.2e-49 198.7 403 34.7
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 1.6e-37 161.4 108 77.8
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.2e-21 108.6 269 33.8
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 1.2e-21 108.6 398 29.9
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 3.2e-17 94.0 80 61.2
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 4.2e-17 93.6 193 33.7
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 4.2e-17 93.6 164 36.0
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 7.1e-17 92.8 384 26.8
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 4.6e-16 90.1 159 37.1
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 1.9e-09 68.2 452 24.1
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 2.1e-08 64.7 77 48.1


User provided reference genes

Program Settings